These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6825#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1192 fasta sequence [CGACGGGTGAATGAGGGAACCGCCACACTGGTACACGTTGATCACTTGGTCCAGCGCTTTCTCCTCCTTCAGGATGGCCACCATCCACGGGAACTCACCGTACTCCGATTCGCCGTCGTTGTCGCCGGTAATGCGGAAGCCCACACCGTCCACATTGCGCAGGCCACACTTTTGCGGCACGCTGACCGTCTTGTCCAGCGGGTTCTGGGTACCGGTTCCGACTTTATCTGGTTGGGTACCCTTCACACCACCACCTTGGTTATATCCACCACCAGTGCCAGGGTGTTTAGCACCGCCCGGACCCTCATGATGTTGTCCAGCTCCGTCCGGTTGCTTTCCTGGCGTAGGGCTCGCCTCTTTTCCGGGAGCAGTAAGCCCAATGACATTAGGCTGTCCACCCTGTGTTCCAGGTTGCACTTGACCGGTACCGACTGGACTGGTAGCACCAGCTCCTCCAGGTGCAGGTTGACCGACTGCTGGACTACCTCCGGCACCACCAGTTCCTCCAGGAATTTGTTGTCCAGGTTTTGGAGCACCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGGTTCGCAAGAGTGAAGGCAGCTTGTTGTTTGCTATAACATTTGTGTTTTAATCCAATTCCTGTGTCTCTATTCGCACGCTCGAATTTAACATGGATGTTGCTGATGCACATGTAGGACAGCTTCGTGTCCGCGATGAAGTGGGAGTTCGGTGCCAAAAATTGTTCCTGGATTTCCTCGAAGAGTTTAAGGAGGATGGTGAAATCAAGTACCTGAAAACGGTGGAGAATCTTGTCAATCCGGACAGATCGACACTGGAGGTCAGTTTTGAGGATGTGGAAAATTACAACCAAACATTGGCCACCGCCATCATCGAGGAGTACTATCGAATTTTTCCGTACTTGTGTCAATCGGTGTCGAACTTCGTTCGCGACAGAACCAGCTTGAAAAAACCCAAAGAATGTTACGTATCGTTTGTGGACGTACCGACGCGCCACAAGGTTCGCGAATTAAGTACGTCGAAGATAGGAACGCTGATCCGCATTTCGGGACAGGTGGTACGCACGCATCCAGTGCATCCT-GAGCTGGTGTTGGGAACGTTCGTCTGCCTTGATTGTCAGACGGAAATCCGAGACGTCGAGCAACAGTTTAAGTTTACAAATCCGAC] [-] EMBL BM624706 [CGACGGGTGAATGAGGGAACCGCCACACTGGTACACGTTGATCACTTGGTCCAGCGCTTTCTCCTCCTTCAGGATGGCCACCATCCACGGGAACTCACCGTACTCCGATTCGCCGTCGTTGTCGCCGGTAATGCGGAAGCCCACACCGTCCACATTGCGCAGGCCACACTTTTGCGGCACGCTGACCGTCTTGTCCAGCGGGTTCTGGGTACCGGTTCCGACTTTATCTGGTTGGGTACCCTTCACACCACCACCTTGGTTATATCCACCACCAGTGCCAGGGTGTTTAGCACCGCCCGGACCCTCATGATGTTGTCCAGCTCCGTCCGGTTGCTTTCCTGGCGTAGGGCTCGCCTCTTTTCCGGGAGCAGTAAGCCCAATGACATTAGGCTGTCCACCCTGTGTTCCAGGTTGCACTTGACCGGTACCGACTGGACTGGTAGCACCAGCTCCTCCAGGTGCAGGTTGACCGACTGCTGGACTACCTCCGGCACCACCAGTTCCTCCAGGAATTTGTTGTCCAGGTTTTGGAGCACCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGG ] [+] EMBL BM604150 [ ccgCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGTGGGTTCGCAAGAGTGAAGGCAGCTTGTTGTTTGCTATAACATTTGTGTTTTAATCCAATTCCTGTGTCTCTATTCGCACGCTCGAATTTAACATGGATGTTGCTGATGCACATGTAGGACAGCTTCGTGTCCGCGATGAAGTGGGAGTTCGGTGCCAAAAATTGTTCCTGGATTTCCTCGAAGAGTTTAAGGAGGATGGTGAAATCAAGTACCTGAAAACGGTGGAGAATCTTGTCAATCCGGACAGATCGACACTGGAGGTCAGTTTTGAGGATGTGGAAAATTACAACCAAACATTGGCCACCGCCATCATCGAGGAGTACTATCGAATTTTTCCGTACTTGTGTCAATCGGTGTCGAACTTCGTTCGCGACAGAACCAGCTTGAAAAAACCCAAAGAATGTTACGTATCGTTTGTGGACGTACCGACGCGCCACAAGGTTCGCGAATTAAGTACGTCGAAGATAGGAACGCTGATCCGCATTTCGGGACAGGTGGTACGCACGCATCCAGTGCATCCT GAGCTGGTGTTGGGAACGTTCGTCTGCCTTGATTGTCAGACGGAAATCCGAGACGTCGAGCAACAGTTTAAGTTTACAAATCCGAC] [+] EMBL BM604925 [ ccgGGCAGCTTGTTGTTTGTTATACCATTTGTGTTTTAATCCAATTCCTGTGTCTCTATTCGCACGCTCGAATTTAACATGGATGTTGCTGATGCACATGTAGGACAGCTTCGTGTCCGCGATGAAGTGGGAGTTCGGTGCCAAAAATTGTTCCTGGATTTCCTCGAAGAATTTAAGGAGGATGGTGAAATCAAGTACCTGAAAACGGTGGAGAATCTTGTCAATCCGGACAGATCGACACTGGAGGTCAGTTTTGAGGATGTGGAAAATTACAACCAAACATTGGCCACCGCCATCATCGAGGAGTACTATCGAATTTTTCCGTATTTGTGTCAATCGGTGTCGAACTTCGTTCGCGACAGAACCAGCTTGAAAAAATCCAAAGAATGTTACGTATCGTTTGTGGACGTACCGACGCGCCACAAGGTTCGCGAATTAAGTACGTCGAAGATAGGAACGCTGATCCGCATTTCGGGACAGGTGGTACGCACGCATCCAGTGCATCCTGGAGCTGGTGTTGGGAACGTTCGTCTGCCTTGATTGTCAGACGGAAATCCGAGACGTCGAGCAACAGTTTAAGTTTACAAATC ] consensusID : consensus_6825#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 983 fasta sequence [CTACTGGAAGTTCGTTGCCAGACACAGCGAGGGACAGAAGTCGATTTCCCGGCCCTTCATCGCAAGCAACATTCGATTGCATTTCCCAAACACTCATCCCGTGTAAAACCACCTCACTTTACATCCACAATGGCCGTCTGGGAAGGAAAGAAGTACAAGATGGAGAAGTCGGAGGGATTCGATGACTACATGAAGGCTCTCGGTGTCGGCATGGTGCTTCGCAAGCTTGGCAACAGCATCTCGCCCACGGTGGAGCTCGTGAAGAATGGTGACGAGTACACGTTCAACACGCTGTCCACCTTCAAGAACACGACGATCAAGTTCAAGCTGGGCGAGGAGTTCGACGAGGAAACCGTCGATGGACGTATGGTCAAGTCGGTCTGCACCTTCGATGGCAACAAGCTGATCCACGAGCAGAAGGGCGAGAAGCCGACCACGATCGTGCGCGAGTTCACTGCCACCGATCTGACCGCCACCATGACTGCCGGCAACGCCAAGTGCGTCCGCTACTACAAGGCCGTCTAAGAAG----GACCGACCGAGCGAGCGAGCTTCTCCGCCGGAGCAACTACACTCGATCTGTGACCGAGTGGACCTTTGCTTTACCATCAGGACATCACATTTCCAGCATCATTCGCATTTAGATTCTACTGCATGGAGAGGACGTAGCAACTAACAAACAGACTAAACGGAGAAACACTCACAGACACAGAACCCTTGCGGGTGAGGAGCCTGCAGACATGCGGTTGCAAAAGGATGTGTGCGTGCGTGTGTGACTGTATTTATAAGAGACCATCGCGGTGTGGTCGTGGAGCACGTGTGTTCGTGTGTGCGTGTGCACGTACCGAAGAAGCGAACAATAGCGATAGTGCGTTTTGCTCATTTGCGATCGGTTATGTATATATTTCGTACGAAATATTATGATTTGATCATAATCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCT] [+] EMBL CNS09PK5 [CTACTGGAAGTTCGGTGCCAGACACAGCGAGGGACAGAAGTCGATTTCCCGGCCCTTCATCGCAAGCAACATTCGATTGCATTTCCCAAACACTCATCCCGTGTAAAACCACCTCACTTTACATCCACAATGGCCGTCTGGGAAGGAAAGAAGTACAAGATGGAGAAGTCGGAGGGATTCGATGACTACATGAAGGCTCTCGGTGTCGGCATGGTGCTTCGCAAGCTTGGCAACAGCATCTCGCCCACGGTGGAGCTCGTGAAGAATGGTGACGAGTACACGTTCAACACGCTGTCCACCTTCAAGAACACGACGATCAAGTTCAAGCTGGGCGAGGAGTTCGACGAGGAAACCGTCGATGGACGTATGGTCAAGTCGGTCTGCACCTTCGATGGCAACAAGCTGATCCACGAGCAGAAGGGCGAGAAGCCGACCACGATCGTGCGCGAGTTCACTGCCACCGATCTGACCGCCACCATGACTGCCGGCAACGCCAAGTGCGTCCGCTACTACAAGGCCGTCTAAGAAG GACCGACCGAGCGAGCGAGCTTCTCCGCCGGAGCAACTACACTCGATCTGTGACCGAGTGGACCTTTGCTTTACCATCAGGACATCACATTTCCAGCATCATTCGCATTTAGATTCTACTGCATGGAGAGGACGTAGCAACTAACAAACAGACTAAACGGAGAAACACTCACAGACACAGAACCCTTGCGGGTGAGGAGCCTGCAGACATGCGGTTGCAAAAGGATGTGTGCGTGCGTGTGTGACTGTATTTATAAGAGACCATCGCGGTGTGGTCGTGGAGCACGTGTGTTCGTGTGTGCGTGTGCACGTACCGAAGAAGCGAACAATAGCGATAGTGCGTTTTGCTCATTTGCGATCGGTTATGTATATATTTCGTACGAAATATTATGATTTGATCATAATCCTCAAAAAAAAAAAAAAAAAAAAAAAA GCCACATGTGCCCGA ] [+] EMBL CNS09652 [ ACTGGAAGTTC TTTTCAGACACAGCGAGGGACAGAAGTCGATTTCCCGGCCTTTCATCGCAGGCAACATTCGATTGCATTTCCCAAACACTCATCCCGTGTAAAACCACCTCACTTTACATCCACAATGGCCGTCTGGGAAGGAAAGAAGTACAAGATGGAGAAGTCGGAGGGATTCGATGACTACATGAAGGCTCTCGGTGTCGGCATGGTGCTTCGCAAGCTTGGCAACAGCATCTCGCCCACGGTGGAGCTCGTGAAGAACGGTGACGAGTACACGTTCAACACGCTGTCCACCTTCAAGAACACGACGATCAAGTTCAAGCTGGGCGAGGAGTTCGACGAGGAAACCGTCGATGGACGTATGGTCAAGTCGGTCTGCACCTTCGATGGCAACAAGCTGATCCACGAGCAGAAGGGCGAGAAGCCGACCACGATCGTGCGCGAGTTCACTGCCACCGATCTGACCGCCACCATGACTGCCGGCAACGCCAAGTGCGTCCGCTACTACAAGGCCGTCTAAGAAGGACCGACCGACCGAGCGAGCGAGCTTCTCCGCCGGGGCAACTACACTCGATCTGTGACCGAGTGGACCTTTGCTTTACCATCAGGACATCACATTTCCAGCATCATTCGCATTTAGATTCTACTGCATGGAGAGGACGTAGCAACT AACAGACTAAACGGAGAAACACACACAGACACAGAACCCTTGCGGGTGAGGAGCCTGCAGACATGCGGTTGCAAAAGGATGTGTGCGTGCGTGTGTGACTGTATTTATAAGAGACCATCGCGGTGTGGTCGTGGAGCACGTGTGTGCGTGTGTGCGTGTGCACGTACCGAAGAAGCAAACAATAGCGATAGTGCGTTTTGCTCATTTGCGGTCGTTTATGTATATATTTCGTACGAAATATTATGATTTGATCATAATCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACAT ] [+] EMBL CNS09QUJ [ AGTTCGTTGCCAGACACAGCGAGGGACAGAAGTCGATTTCCCGGCCCTTCATCGCAAGCAACATTCGATTGCATTTCCCAAACACTCATCCCGTGTAAAACCACCTCACTTTACATCCACAATGGCCGTCTGGGAAGGAAAGAAGTACAAGATGGAGAAGTCGGAGGGATTCGATGACTACATGAAGGCTCTCGGTGTCGGCATGGTGCTTCGCAAGCTTGGCAACAGCATCTCGCCCACGGTGGAGCTCGTGAAGAATGGTGACGAGTACACGTTCAACACGCTGTCCACCTTCAAGAACACGACGATCAAGTTCAAGCTGGGCGAGGAGTTCGACGAGGAAACCGTCGATGGACGTATGGTCAAGTCGGTCTGCACCTTCGATGGCAACAAGCTGATCCACGAGCAGAAGGGCGAGAAGCCGACCACGATCGTGCGCGAGTTCACTGCCACCGATCTGACCGCCACCATGACTGCCGGCAACGCCAAGTGCGTCCGCTACTACAAGGCCGTCTAAGAAG GACCGACCGAGCGAGCGAGCTTCTCCGCCGGAGCAACTACACTCGATCTGTGACCGAGTGGACCTTTGCTTTACCATCAGGACATCACATTTCCAGCATCATTCGCATTTAGATTCTACTGCATGGAGAGGACGTAGCAACTAACAAACAGACTAAACGGAGAAACACTCACAGACACAGAACCCTTGCGGGTGAGGAGCCTGCAGACATGCGGTTGCAAAAGGATGTGTGCGTGCGTGTGTTACTGTATTTATAAGAGACCATCGCGGTGTGGTCGTGGAGCACGTGTGTTCGTGTGTTCGTGTGCACGTACCGAAGAAGCGAACAATAGCGATAGTGCGTTTTGCTCATTTGCGATCGGTTATGTATATATTTCGTACGAAATATTATGATTTGATCATAATCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGCCCGAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6825#0 CGACGGGTGAATGAGGGAACCGCCACACTGGTACACGTTGATCACTTGGTCCAGCGCTTT 60 consensus_6825#1 CTACTGG-AAGTTCGTTGCCAGACACAGCGAGGGACAGAAGTCGATT--TCCCGGCCCTT 57 * ** ** * * * * * **** * ** ** ** *** * * ** consensus_6825#0 CTCCTCCTTCAGGAT--GGCCACCATCCACGGGAACTCACCGTACTCCGATTCGCCGTCG 118 consensus_6825#1 CATCGCAAGCAACATTCGATTGCATTTCCCAAACACTCATCCCGTGTAAAACCACCTCAC 117 * * * ** ** * * * * * ***** * * * ** consensus_6825#0 TTGTCGCCGGTAATGCGGAAGCCCACACCGTCCACATTGCGCAGGCCACACTTTTGCGGC 178 consensus_6825#1 TTTACATCCACAATG-----------GCCGTCTGGGAAGGAAAGAAGTACAAGATGGAGA 166 ** * * **** ***** * ** ** * consensus_6825#0 ACGCTGACCGTCTTGTCCAGCGGGTTCTGGGTACCGGTTCCGACTTTATCTGGTTGGGTA 238 consensus_6825#1 AGTCGGAGGGATTCGATGACTACATGAAGGCTCTCGGTGTCGGCATGGT---GCTTCGCA 223 * * ** * * * * * ** * **** ** * * * * * * * consensus_6825#0 CCCTTCACACCACCACCTTGGTTATATCCACCACCAGTGCCAGGGTGTTTAGCACCGCCC 298 consensus_6825#1 AGCTTGGCAACAGCATCTCG------CCCACGGTGGAGCTCGTGAAGAATGGTGACGAGT 277 *** ** ** ** ** * **** * * * * * ** consensus_6825#0 GGACCCTCATGATGTTGTCCAGCTCCGTCCGGTTGCTTTCCTGGCGTAGGGCTCGCCTCT 358 consensus_6825#1 ACACGTTCAACACGCTGTCCACCTTCAAGAACACGACGATCAAGTTCAAGCTGGGCGAGG 337 ** *** * * ****** ** * * * * * * ** consensus_6825#0 TTTCCGG-GAGCAGTAAGCCCAATGACAT-TAGGCTGTCCACCCTGTGTTCCAGGTTGCA 416 consensus_6825#1 AGTTCGACGAGGAAACCGTCGATGGACGTATGGTCAAGTCGGTCTGCACCTTCGATGGCA 397 * ** *** * * * * *** * * * * * *** * * *** consensus_6825#0 CTTGACCGGTAC-CGACTGGACTGGTAGCA---CCAGCTCCTCCAGGTGCAGGTTGACCG 472 consensus_6825#1 ACAAGCTGATCCACGAGCAGAAGGGCGAGAAGCCGACCACGATCGTGCGCGAGTTCACTG 457 * * * * *** ** ** * * * * * * * ** *** ** * consensus_6825#0 ACTGCTGGACTACCTCCGGCACCACCAGTTCCTCCAGGAATTTGTTGTCCAGGTTTTGGA 532 consensus_6825#1 -CCACCGATCTGAC--CGCCACCATGACTGCCGGCAACGCCAAGTGCGTCCGCTACTACA 514 * * * ** * ** ***** * * ** ** ** * * * * * consensus_6825#0 GCACCGGACGCGTGGG--CGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCG---G 587 consensus_6825#1 AGGCCGTCTAAGAAGGACCGACCGAGCGAGCGAGCTTCTCCGCCGGAGCAACTACACTCG 574 *** * ** ** ** * * *** * * ** * ** * * consensus_6825#0 GTTCGCAAGAGTGAAGGCAGCTTGTTGTTTGCTATAACATTTGTGTTTTAATCCAATTCC 647 consensus_6825#1 ATCTGTGACCGAGTGGACCTTTGCTTTACCATCAGGACATCACATTTCCAGCATCATTC- 633 * * * * * * * * ** * **** ** * **** consensus_6825#0 TGTGTCTCTATTCGCACGCTCGAATTTAACATGGATGTTG-CTGATGCACATGTAGGACA 706 consensus_6825#1 -GCATTTAGATTCTACTGCATGGAGAGGACGTAGCAACTAACAAACAGACTAAACGGAGA 692 * * * **** ** * * ** * * * * * ** *** * consensus_6825#0 GCTTCGTGTCCGCGATGAAG---TGGGAGTTCGGTGCCAAAAATTGTTCCTGGATTTCCT 763 consensus_6825#1 AACACTCACAGACACAGAACCCTTGCGGGTGAGGAGCCTGCAGACATGC---GGTTGCAA 749 * * *** ** * ** ** *** * * * * ** * consensus_6825#0 CGAAGAGTTTAAGGAGGATGGTGAAATCAAGTACCTGAAAACGGTGGAGAATC-TTGTCA 822 consensus_6825#1 AAGGATGTGTGCGTGCGTGTGTGACTGTATTTATAAGAGACCATCGCGGTGTGGTCGTGG 809 ** * * * **** * ** ** * * * * * * ** consensus_6825#0 ATCCGGACAGATCGACACTGGAGGT-CA-GTTTTGAGGATGTGGAAAATTACAACCAAAC 880 consensus_6825#1 AGCACGTGTGTTCGTGTGTGCGTGTGCACGTACCGAAGAAGCGAACAATAGCGATAGTGC 869 * * * * *** ** ** ** ** ** ** * * * *** * * * consensus_6825#0 ATTGGCCACCGCCATCATCGAGGAGTACTATCGAATTTTTCCGTACTTGTGTCAATCGGT 940 consensus_6825#1 GTTTTGCTCATTTGCGATCGG------TTATGTATATATTTCGTAC--GAAATATTATGA 921 ** * * **** *** * * ** ***** * * * * consensus_6825#0 GTCGAACTTCGTTCGCGACAGAACCAGCTTGAAAAAACCCAAAGAATGTTACGTATCGTT 1000 consensus_6825#1 TTTGATCATAATCCTCAAAAAAAAAAAAAAAAAAAAA---AAAAAAGGCCACATGT-GCC 977 * ** * * * * * * * ** * ****** *** ** * ** * * * consensus_6825#0 TGTGGACGTACCGACGCGCCACAAGGTTCGCGAATTAAGTACGTCGAAGATAGGAACGCT 1060 consensus_6825#1 CGAGCT------------------------------------------------------ 983 * * consensus_6825#0 GATCCGCATTTCGGGACAGGTGGTACGCACGCATCCAGTGCATCCTGAGCTGGTGTTGGG 1120 consensus_6825#1 ------------------------------------------------------------ consensus_6825#0 AACGTTCGTCTGCCTTGATTGTCAGACGGAAATCCGAGACGTCGAGCAACAGTTTAAGTT 1180 consensus_6825#1 ------------------------------------------------------------ consensus_6825#0 TACAAATCCGAC 1192 consensus_6825#1 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||