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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6828#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 750 fasta sequence
[AGGGTTTATGCCGTACACCACTGTCTCATGTTTGTTTTGTGCGGACACAACATGAACGAAAATGGACACGATTTGATTGAACTTGAGGCATGCAAAATGATTGCGTTCCTTGGGCACCATCCGTCACAGCAGCTGTCAGTGGGCCTCTGCCGCTGTTGTGGCTGCGGGATGTAAACAAACAACAAACGATCGTTCGTTTGCTTTCCCTTTTAGTTTTAGTTTCGCGCACGGAAGAAAAACAACCCTCGCCTGTTCGGAAGGGAAAAGCCCGGCACCACCGCCAGCACCACCACCAGCACCACCACCAACGGCAGACCGAATGGGTGCATTCCAGTGGCCATGGGAATATTCGTTTCCACCATTTTTCACAGTGCAAGTGCACGCCAAAACGAAGGAACAGCAGCTGGCCACCTGGAAGGAGCTGGTGCTAAACTATCAAAAGCATGAGGGCCAAGCGCTGCTAAACATTGCCGAAGACGCGCCCCCGTTCGTGAACAGGGAGCTTGCCCGCAAACTGTCGCCCGAGGCCCGGCTCTGGGTGATGGAGGAGCTGGCCAGGACGGGCCATGCCGCGACCGCCGACAAGCGCAAACAGCAGTGGGAAGTGTACTGGCACACGCTGGACGAGTGGAGCAACATCCTGTACGATTGGGCCGTTGGCAGCGGCACCACGAACACGGTCTGCACGCTGTACGAGCTGGTGGCGGGCGATAATACGGTCGGCGAAAAGTTTCACGGGCTGGACGAGGG]
[+] EMBL AL933293 [AGGGTTTATGCCGTACACCACTGTCTCATGTTTGTTTTGTGCGGACACAACATGAACGAAAATGGACACGATTTGATTGAACTTGAGGCATGCAAAATGATTGCGTTCCTTGGGCACCATCCGTCACAGCAGCTGTCAGTGGGCCTCTGCCGCTGTTGTGGCTGCGGGATGTAAACAAACAACAAACGATCGTTCGTTTGCTTTCCCTTTTAGTTTTAGTTTCGCGCACGGAAGAAAAACAACCCTCGCCTGTTCGGAAGGGAAAAGCCCGGCACCACCGCCAGCACCACCACCAGCACCACCACCAACGGCAGACCGAATGGGTGCATTCCAGTGGCCATGGGAATATTCGTTTCCACCATTTTTCACAGTGCAAGTGCACGCCAAAACGAAGGAACAGCAGCTGGCCACCTGGAAGGAGCTGGTGCTAAACTATCAAAAGCATGAGGGCCAAGCGCTGCTAAACATTGCCGAAGACGCGCCCCCGTTCGTGA ]
[+] EMBL BX616648 [ ACAAACAACAAACGATCGTTCGTTTGCTTTCCCTTTTAGTTTTAGTTTCGCGCACGGAAGAAAAACAACCCTCGCCTGTTCGGAAGGGAAAAGCCCGGCACCACCGCCAGCACCACCACCAGCACCACCACCAACGGCAGACCGAATGGGTGCATTCCAGTGGCCATGGGAATATTCGTTTCCACCATTTTTCACAGTGCAAGTGCACGCCAAAACGAAGGAACAGCAGCTGGCCACCTGGAAGGAGCTGGTGCTAAACTATCAAAAGCATGAGGGCCAAGCGCTGCTAAACATTGCCGAAGACGCGCCCCCGTTCGTGAACAGGGAGCTTGCCCGCAAACTGTCGCCCGAGGCCCGGCTCTGGGTGATGGAGGAGCTGGCCAGGACGGGCCATGCCGCGACCGCCGACAAGCGCAAACAGCAGTGGGAAGTGTACTGGCACACGCTGGACGAGTGGAGCAACATCCTGTACGATTGGGCCGTTGGCAGCGGCACCACGAACACGGTCTGCACGCTGTACGAGCTGGTGGCGGGCGATAATACGGTCGGCGAAAAGTTTCACGGGCTGGACGAGGG]
consensusID : consensus_6828#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 622 fasta sequence
[TCCCGAGGTTAGAAGAAAAC-ACCCTCGCCTG-TCGGAAGGGAAAGG-CTGGCACCACCACCAGCACCACCAGCACCACCACCAACGGCAGACCGAATGGGTGCATTCCAGTGGCCATGGGAGTATTCGTTTCCACCATTTTTCACAGTGCAAGTGCACGCCAAAACGAAGGAACAGCAGCTGGCCACCTGGAAGGAGCTGGTGCTAAACTATCAAAAGCATGAGGGCCAAGCGCTGGTAAACATTGCCGAAGACGCGCCCCCGTTCGTGAACCGGGAGCTTGCCCGCAAACTGTCGCCCGAGGCCCGGCTCTGGGTGATGGAGGAGCTGGCCAGGACGGGCCATGCCGCGACCGCCGACAAGCGCAAACAGCAGTGGGAAGTGTACTGGCACACGCTGGACGAGTGGAGCAACATCCTGTACCAATGGGCCGTTGCCAGCGGCACCACGAACACGGTCTGCACGCTGTACGAGCTGGTGGCGGGCGATAATACGGTCGGCGAAGAGTTTCACGGGCTGGACGAGGGCGTGCTGAA-AAGGCGCTGAAGCTGCTGGAGGGACGAGGAAAGTGTGAGCTGATAGCGTTCGACGATAATGA-GGGGTGAAG--TTTCTAACACCTGTAACA]
[+] EMBL AL932782 [TCCCGAGGTTAGAAGAAAAC ACCCTCGCCTG TCGGAAGGGAAAGG CTGGCACCACCACCAGCACCACCAGCACCACCACCAACGGCAGACCGAATGGGTGCATTCCAGTGGCCATGGGAGTATTCGTTTCCACCATTTTTCACAGTGCAAGTGCACGCCAAAACGAAGGAACAGCAGCTGGCCACCTGGAAGGAGCTGGTGCTAAACTATCAAAAGCATGAGGGCCAAGCGCTGGTAAACATTGCCGAAGACGCGCCCCCGTTCGTGAACCGGGAGCTTGCCCGCAAACTGTCGCCCGAGGCCCGGCTCTGGGTGATGGAGGAGCTGGCCAGGACGGGCCATGCCGCGACCGCCGACAAGCGCAAACAGCAGTGGGAAGTGTACTGGCACACGCTGGACGAGTGGAGCAACATCCTGTACGATTGGGCCGTTGCCAGCGGCACCACGAACACGGTCTGCACGCTGTACGAGCTGGTGGCGGGCGATAATACGGTCGGCGAAGAGTTTCACGGGCTGGACGAGGGCGTGCTGAA AAGGCGCTGAAGCTGCTGGAGGGACGAGGAAAGTGTGAGCTGATAGCGTTCGACGATAATGA GGGGTGAAG TTTCTAACACCTGTAACA]
[+] EMBL BM646394 [ ccggaAAAACAACCCTCGCCTGTTCGGAAGGGAAAGGCCTGGCACCACCACCAGCACCACCAGCACCACCACCAACGGCAGACCGAATGGGTGCATTCCAGTGGCCATGGGAGTATTCGTTTCCACCATTTTTCACAGTGCAAGTGCACGCCAAAACGAAGGAACAGCAGCTGGCCACCTGGAAGGAGCTGGTGCTAAACTATCAAAAGCATGAGGGCCAAGCGCTGGTAAACATTGCCGAAGACGCGCCCCCGTTCGTGAACCGGGAGCTTGCCCGCAAACTGTCGCCCGAGGCCCGGCTCTGGGTGATGGAGGAGCTGGCCAGGACGGGCCATGCCGCGACCGCCGACAAGCGCAAACAGCAGTGGGAAGTGTACTGGCACACGCTGGACGAGTGGAGCAACATCCTGTACCAATGGGCCGTTGCCAGCGGCACCACGAACACGGTCTGCACGCTGTACGAGCTGGTGGCGGGCGATAATACGGTCGGCGAAGAGTTTCACGGGCTGGACGAGGGCGTGCTGAAGAAGGCGCTGAAGCTGCTGGAGGGACGAGGAAAGTGTGAGCTGATAGCGTTCGACGATAATGAGGGGGTGAAGTTTTTCTAACACCTGT ]
[+] EMBL BM603753 [ AAGGAGCTGGTGCTAAACTATCAAAAGCATGACGGCCAAGCGCTGGTAAACATTGCCTAAGACGCGCCCCCGTTCGTGAACCGGGAGCTTGCCCGCAAACTGTCCCCCGAGGCCCGGCTCTGGGTGATGGAGGAGCTGGCCAGGACGGGCCATGCCGCGACCGTCGACAAGAGCAAACAGCAGTGGGAAGTGTACTGGCACACGCTGGACGAGTGGAGCAACATCCTGTACCAATGGGCCGTTGCCAGCGGCACCACGAACACGGTCT ]
consensusID : consensus_6828#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence
[CAGAATCCCCCGAGGTTTTCGCGCACGGAAGAAAAACACCTCGCTGTTCGGAAGGGAAAGGCCTGGCACCACCACCAGCACCACCACCAACGGCAGACCGAATGGGTGCATTCCAGTGGCCATGGGAGTATTCGTTTCCACCATTTTTCACCGTGCAAGTGCACGCCAAAACGAAGGAACAGCAGCTGGCACTGGAAGTGAGCTGGTGCTAAACTTATTCAAAAGCATGTAAGTGTGCCAAGCTCTGGCGTAAAACAATATTGCCCGAAAGACCAGCGCCCCCCGNGTTTCCGCTGAAACCCGGGAAGGCCTCTTGGTCCCCGGCGAAAAACCTGGTCCGCCCCCGAGCGGCCCCCCGGGGGCNTCNCTTGGGCGGTTGACATTGGCCAGCGGAATGCGCCTTGGCCCCAAGGCGGCAACCGGGGGGGCCCAACGTGGCCCCGGGGAAACCCGGCCCGGAAAC]
[+] EMBL AL694836 [CAGAATCCCCCGAGGTTTTCGCGCACGGAAGAAAAACACCTCGCTGTTCGGAAGGGAAAGGCCTGGCACCACCACCAGCACCACCACCAACGGCAGACCGAATGGGTGCATTCCAGTGGCCATGGGAGTATTCGTTTCCACCATTTTTCACCGTGCAAGTGCACGCCAAAACGAAGGAACAGCAGCTGGCACTGGAAGTGAGCTGGTGCTAAACTTATTCAAAAGCATGTAAGTGTGCCAAGCTCTGGCGTAAAACAATATTGCCCGAAAGACCAGCGCCCCCCGNGTTTCCGCTGAAACCCGGGAAGGCCTCTTGGTCCCCGGCGAAAAACCTGGTCCGCCCCCGAGCGGCCCCCCGGGGGCNTCNCTTGGGCGGTTGACATTGGCCAGCGGAATGCGCCTTGGCCCCAAGGCGGCAACCGGGGGGGCCCAACGTGGCCCCGGGGAAACCCGGCCCGGAAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6828#0 AGGGTTTATGCCGTACACCACTGTCTCATGTTTGTTTTGTGCGGACACAACATGAACGAA 60
consensus_6828#1 ------------------------------------------------------------
consensus_6828#2 ------------------------------------------------------------
consensus_6828#0 AATGGACACGATTTGATTGAACTTGAGGCATGCAAAATGATTGCGTTCCTTGGGCACCAT 120
consensus_6828#1 ------------------------------------------------------------
consensus_6828#2 ------------------------------------------------------------
consensus_6828#0 CCGTCACAGCAGCTGTCAGTGGGCCTCTGCCGCTGTTGTGGCTGCGGGATGTAAACAAAC 180
consensus_6828#1 ------------------------------------------------------------
consensus_6828#2 ------------------------------------------------------------
consensus_6828#0 AACAAACGATCGTTCGTTTGCTTTCCCTTTTAGTTTTAGTTTCGCGCACGGAAGAAAAAC 240
consensus_6828#1 ---------------------------------------TCCCGAGGTTAGAAGAAAAC- 20
consensus_6828#2 -----------------------CAGAATCCCCCGAGGTTTTCGCGCACGGAAGAAAAAC 37
* ** * ********
consensus_6828#0 AACCCTCGCCTGTTCGGAAGGGAAAAGCCCGGCACCACCGCCAGCACCACCACCAGCACC 300
consensus_6828#1 -ACCCTCGCCTGT-CGGAAGGGAAAGGCT-GGCACCACCACCAGCACCACCA---GCACC 74
consensus_6828#2 --ACCTCGC-TGTTCGGAAGGGAAAGGCCTGGCACCACCACCAGCACCACCA-------- 86
****** *** *********** ** ********* ************
consensus_6828#0 ACCACCAACGGCAGACCGAATGGGTGCATTCCAGTGGCCATGGGAATATTCGTTTCCACC 360
consensus_6828#1 ACCACCAACGGCAGACCGAATGGGTGCATTCCAGTGGCCATGGGAGTATTCGTTTCCACC 134
consensus_6828#2 ----CCAACGGCAGACCGAATGGGTGCATTCCAGTGGCCATGGGAGTATTCGTTTCCACC 142
***************************************** **************
consensus_6828#0 ATTTTTCACAGTGCAAGTGCACGCCAAAACGAAGGAACAGCAGCTGGCCACCTGGAAGGA 420
consensus_6828#1 ATTTTTCACAGTGCAAGTGCACGCCAAAACGAAGGAACAGCAGCTGGCCACCTGGAAGGA 194
consensus_6828#2 ATTTTTCACCGTGCAAGTGCACGCCAAAACGAAGGAACAGCAGCTGGC-ACTGGAAGTGA 201
********* ************************************** ** * * **
consensus_6828#0 GCTGGTGCTAAACTA--TCAAAAGCATGAGGGCCAAGCGCTGCTAAACATTGCCGAAGAC 478
consensus_6828#1 GCTGGTGCTAAACTA--TCAAAAGCATGAGGGCCAAGCGCTGGTAAACATTGCCGAAGAC 252
consensus_6828#2 GCTGGTGCTAAACTTATTCAAAAGCATG-----TAAGTG-TGCCAAGCTCTGGCGTAAA- 254
************** *********** *** * ** ** * ** ** * *
consensus_6828#0 GCGCCCCCGTTCGTGAACAGGGAGCTTGCCCGCAAACTGTCGCCCGAGGCCCGGCTCTGG 538
consensus_6828#1 GCGCCCCCGTTCGTGAACCGGGAGCTTGCCCGCAAACTGTCGCCCGAGGCCCGGCTCTGG 312
consensus_6828#2 ACAATATTGCCCGAAAGACCAGCGC---CCCCCGNGTTTCCGCT-GAAACCCGG------ 304
* * ** * * ** *** * * *** ** *****
consensus_6828#0 GTGATGGAGGAGCTGGCCAGGACGGGCCATGCCGCGACCGCCGACAAGCG--CAAACAGC 596
consensus_6828#1 GTGATGGAGGAGCTGGCCAGGACGGGCCATGCCGCGACCGCCGACAAGCG--CAAACAGC 370
consensus_6828#2 --GAAGGCCTCTTGGTCCCCGGCGAA--AAACCTGGTCCGCCCCCGAGCGGCCCCCCGGG 360
** ** * ** * ** * ** * ***** * **** * * *
consensus_6828#0 AGTGGGAAGTGTACTGGCACACGCTGGACGAGTGGAGCAACATCCTGTACGATTGGGCCG 656
consensus_6828#1 AGTGGGAAGTGTACTGGCACACGCTGGACGAGTGGAGCAACATCCTGTACCAATGGGCCG 430
consensus_6828#2 GGCNTCNCTTGGGC-GGTTGACATTGGCC-AGCGGAATG-CGCCTTG-GCCCCAAGGCGG 416
* ** * ** ** *** * ** *** * * ** * *** *
consensus_6828#0 TTGGCAGCGGCACCACGAACACGGTCTGCACGCTGTACGAGCTGGTGGCGGGCGATAATA 716
consensus_6828#1 TTGCCAGCGGCACCACGAACACGGTCTGCACGCTGTACGAGCTGGTGGCGGGCGATAATA 490
consensus_6828#2 CAACCGGGGGGGCCC--AACGTGGCCCCGGGGAAACCCGGCCCGGAAAC----------- 463
* * ** ** *** ** * * ** * ** *
consensus_6828#0 CGGTCGGCGAAAAGTTTCACGGGCTGGACGAGGG-------------------------- 750
consensus_6828#1 CGGTCGGCGAAGAGTTTCACGGGCTGGACGAGGGCGTGCTGAAAAGGCGCTGAAGCTGCT 550
consensus_6828#2 ------------------------------------------------------------
consensus_6828#0 ------------------------------------------------------------
consensus_6828#1 GGAGGGACGAGGAAAGTGTGAGCTGATAGCGTTCGACGATAATGAGGGGTGAAGTTTCTA 610
consensus_6828#2 ------------------------------------------------------------
consensus_6828#0 ------------
consensus_6828#1 ACACCTGTAACA 622
consensus_6828#2 ------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||