These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6833#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 904 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGGTTTTGTTATGAAAACCCGGCTGATTACGACAAAATAAGAAATTTTATCGGCAGATAGGTGCATTATATTTGGAAATAAAAAAAAACCCACTCACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTGGGCGCTATTGCATCAATTGCAACGAGGATACCGCATCAAAATGTGGCAAAATTGCAGCGAATCAATCTCGTCCGTCGGATGGCTACCGGAGCGGCACCGAAAAAACCAACCAGCACACTGGGACTGGCTGTGAAGGGAATGGCAATCGGTGCCCTGGTCGGCACCGGCTGGTCCGGTTACAGCTACTTCAAGGGCGGTCCCACAGATCATATGCTGCACGAGCATGTAGGGCCGAAGGTTCTCGACAAGCTGCCGGATGTGAAAATAATGCGCAAAGTAGTCAATCCGAATGACGATTCGGGCTTGGATTTGGTGCTGTTCCAGTTCCAAACGTGCCCGTTCTGCTGCAAGGTTCGTGCTTTCCTAGACCACAGCGGGCTTTCCTACTCAGTGGTGGAGGTGGATGCAGTACTTCGTCAGGACATTCGCTGGTCGGACAGTAAAAAAGTTCCAATTTTGCTAGCGAAAACGAAATCGGGCAAATACGTTCAGCTAACGGACTCGAGCATGATAGTGTCCTCGATTTCCAGCTTCCTTCGGGACAAGAAGCAAGACATCGGCGAGCTAGCCAAATACTATCCGTCGATATCGTACGAAAACGATGCGGGACGAAAAGTGTTCGACATTATGAACAAATATTTCCTGATGTATCANGAAAAGAAGGTCGACAATCGTACAAAGGAAGAGCAAGAGGAGGAGCGCAAGTGGCGTGCCTGGGCCGACGATCATTTTGGTGCA] [+] EMBL BM604489 [CCGCGGACGCGTGGGCGGACGCGTGGGGTTTTGTTATGAAAACCCGGCTGATTACGACAAAATAAGAAATTTTATCGGCAGATAGGTGCATTATATTTGGAAATAAAAAAAAACCCACTCACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTGGGCGCTATTGCATCAATTGCAACGAGGATACCGCATCAAAATGTGGCAAAATTGCAGCGAATCAATCTCGTCCGTCGGATGGCTACCGGAGCGGCACCGAAAAAACCAACCAGCACACTGGGACTGGCTGTGAAGGGAATGGCAATCGGTGCCCTGGTCGGCACCGGCTGGTCCGGTTACAGCTACTTCAAGGGCGGTCCCACAGATCATATGCTGCACGAGCATGTAGGGCCGAAGGTTCTCGACAAGCTGCCGGATGTGAAAATAATGCGCAAAGTAGTCAATCCGAATGACGATTCGGGCTTGGATTTGGTGCTGTTCCAGTTCCAAACGTGCCCGTTCTGCTGCAAGGTTCGTGCTTTCCTAGACCACAGCGGGCTTTCCTACTCAGTGGTGGAGGTGGATGCAGTACTTCGTCAGGACATTCGCTGGTCGGACAGTAAAAAAGTTCCAATTTTGCTAGCGAAAACGAAATCGGGCAAATACGTTCAGCTAACGGACTCGAGCATGATAGTGTCCT ] [+] EMBL BX623978 [ CCGGAGCGGGACCGAAAAAACCAACCAGCACACTAGGACTGGCTGTGAAGGGAATGGCAATCGGTGCCCTGGTCGGCACCGGCTGGTCCGGTTACAGCTACTTCAAGGGCGGTCCCACAGATCATATGCTGCACGAGCATGTAGGGCCGAAGGTTCTCGACAAGCTGCCGGATGTGAAAATAATGCGCAAAGTAGTCAATCCGAATGATGATTCGGGCTTGGATTTGGTGCTGTTCCAGTTCCAAACGTGCCCGTTCTGCTGCAAGGTTCGTGCTTTCCTAGACCACAGCGGGCTTTCCTACTCAGTGGTGGAGGTGGATGCAGTACTTCGTCAGGACATTCGCTGGTCGGACAGTAAAAAAGTTCCAATTTTGCTAGCGAAAACGAAATCGGGCAAATACGTTCAGCTAACGGACTCGAGCATGATAGTGTCCTCGATTTCCAGCTTCCTTCGGGACAAGAAGCAAGACATCGGCGAGCTAGCCAAATACTATCCGTCGATATCGTACGAAAACGATGCGGGACGAAAAGTGTTCGACATTATGAACAAATATTTCCTGATGTATCANGAAAAGAAGGTCGACAATCGTACAAAGGAAGAGCAAGAGGAGGAGCGCAAGTGGCGTGCCTGGGCCGACGATCATTTTGGTGCA] consensusID : consensus_6833#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence [AATTCCCCGCNGGTTTAAATAAAAAAACCACTCACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTGGGCGCTATTGCATCAATTGCAACGAGGATACCGCATCAAAATGTGGCTAAATTGCAGCGAATCAATCTCGTCCGTCGGATGGCTACCGGAGCGGGACCGAAAAAACCAACCAGCACACTAGGACTGGCTGTGAAGGGAATGGCAATCGGTGCCCTGGTCGGCACGGCTGGTCCGGTTACAGCTACTTCAAGGGCGGTCCCACAGATCATATGCTGCACGAGCATGTAGGGCCGAAGGTTCTCGACAAGCTGCCGGATGTGAAAATAATGCGCAAAGTAGTCAATCCGAATGATGCATTCGGGCTTGGATTTGGTGCTGTTCCAGTTCCAAACGTGCCCGTTCTGCTGCAAGGTTCGTAGCTATTCCTAGACCACAGCGGGCTTTCCTACTCAGATGGTAGGACNGTGGCATGCAGTACTTTCAGNTCAGGACATTCGACTGNGTCGGCACAGNAAAACAAGTTCCAATTATAGCATAGCCGAAAACCGANAATCGGGCNACATACCGTACAAGCTAAACGGACTCGAAGACAATGAATAGATGTNACTCGAATCTTCCAGCCTATCCTATCGGCNGCACAAGAAGCNAAGAACATCAGGCGANCACTAGGCCAAATACTATCCGN] [+] EMBL AL694900 [AATTCCCCGCNGGTTTAAATAAAAAAACCACTCACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTGGGCGCTATTGCATCAATTGCAACGAGGATACCGCATCAAAATGTGGCTAAATTGCAGCGAATCAATCTCGTCCGTCGGATGGCTACCGGAGCGGGACCGAAAAAACCAACCAGCACACTAGGACTGGCTGTGAAGGGAATGGCAATCGGTGCCCTGGTCGGCACGGCTGGTCCGGTTACAGCTACTTCAAGGGCGGTCCCACAGATCATATGCTGCACGAGCATGTAGGGCCGAAGGTTCTCGACAAGCTGCCGGATGTGAAAATAATGCGCAAAGTAGTCAATCCGAATGATGCATTCGGGCTTGGATTTGGTGCTGTTCCAGTTCCAAACGTGCCCGTTCTGCTGCAAGGTTCGTAGCTATTCCTAGACCACAGCGGGCTTTCCTACTCAGATGGTAGGACNGTGGCATGCAGTACTTTCAGNTCAGGACATTCGACTGNGTCGGCACAGNAAAACAAGTTCCAATTATAGCATAGCCGAAAACCGANAATCGGGCNACATACCGTACAAGCTAAACGGACTCGAAGACAATGAATAGATGTNACTCGAATCTTCCAGCCTATCCTATCGGCNGCACAAGAAGCNAAGAACATCAGGCGANCACTAGGCCAAATACTATCCGN] consensusID : consensus_6833#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 695 fasta sequence [CCGCCCACGCGTCCGACAAAATAAGAAATTTTATCGGCAGATAGGTGCATTATATTTGGAAATAAAAAAAAACCCACTCACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTGGGCGCTATTGCATCAATTGCAACGAGGATACCGCATCAAAATGTGGCAAAATTGCAGCGAATCAATCTCGTCCGTCGGATGGCTACCGGAGCGGCACCGAAAAAACCAACCAGCACACTGGGACTGGCTGTGAAGGGAATGGCAATCGGTGCCCTGGTCGGCACCGGCTGGTCCGGTTACAGCTACTTCAAGGGCGGTCCCACAGATCATATGCTGCACGAGCATGTAGGGCCGAAGGTTCTCGACAAGCTGCCGGATGTGAAAATAATGCGCAAAGTAGTCAATCCGAATGACGATTCGGGCTTGGATTTGGTGCTGTTCCAGTTCCAAACGTGCCCGTTCTGCTGCAAGGTTCGTGCTTTCCTAGACCACAGCGGGCTTTCCTACTCAGTGGTGGAGGTGGATGCAGTACTTCGTCAGGACATTCGCTGGTCGGACAGTAAAAAAGTTCCAATTTTGCTAGCGAAAACGAAATCGGGCAAATACGTTCAGCTAACGGACTCGAGCATGATAGTGTCCTCGATTTCCAGCTTCCTTCGGGACAAGAAGCAAGACATCGGCGAGCTAGCC] [+] EMBL BM575909 [CCGCCCACGCGTCCGACAAAATAAGAAATTTTATCGGCAGATAGGTGCATTATATTTGGAAATAAAAAAAAACCCACTCACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTGGGCGCTATTGCATCAATTGCAACGAGGATACCGCATCAAAATGTGGCAAAATTGCAGCGAATCAATCTCGTCCGTCGGATGGCTACCGGAGCGGCACCGAAAAAACCAACCAGCACACTGGGACTGGCTGTGAAGGGAATGGCAATCGGTGCCCTGGTCGGCACCGGCTGGTCCGGTTACAGCTACTTCAAGGGCGGTCCCACAGATCATATGCTGCACGAGCATGTAGGGCCGAAGGTTCTCGACAAGCTGCCGGATGTGAAAATAATGCGCAAAGTAGTCAATCCGAATGACGATTCGGGCTTGGATTTGGTGCTGTTCCAGTTCCAAACGTGCCCGTTCTGCTGCAAGGTTCGTGCTTTCCTAGACCACAGCGGGCTTTCCTACTCAGTGGTGGAGGTGGATGCAGTACTTCGTCAGGACATTCGCTGGTCGGACAGTAAAAAAGTTCCAATTTTGCTAGCGAAAACGAAATCGGGCAAATACGTTCAGCTAACGGACTCGAGCATGATAGTGTCCTCGATTTCCAGCTTCCTTCGGGACAAGAAGCAAGACATCGGCGAGCTAGCC] [+] EMBL BM620018 [ CCG CAAAATAAGAAATTTTATCGGCAGATAGGTGCATTATATTTGGAAATAAAAAAAAACCCACTCACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTGGGCGCTATTGCATCAATTGCAACGAGGATACCGCATCAAAATGTGGCAAAATTGCAGCGAATCAATCTCGTCCGTCGGATGGCTACCGGAGCGGCACCGAAAAAACCAACCAGCACACTGGGACTGGCTGTGAAGGGAATGGCAATCGGTGCCCTGGTCGGCACCGGCTGGTCCGGTTACAGCTACTTCAAGGGCGGTCCCACAGATCATATTCTGCACGAGCATGTAGGGCCGAAGGTTCTCGACAAGCTGCCGGA ] consensusID : consensus_6833#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence [GCAGAATTCCCCGAGGTAAAATAAAAAAAAACCACTCACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTGTGGCGCTATTGCATCAATTGCAACGAGGATACCGCATCAAAATGTGGCAAAATTGCAGCGAATCAATCTCGTCCGTCGGATGGCTACCGGAGCGGCACCGAAAAAACCAACAGCACACTGGGACTGGCTGTGAAGGGAATGGCAATCGGTGCCCTGGTCGGCACCGGCTGGTCCGGTTACAGCTACTTCAAGGGCGGTCCCACAGATCATATGCTGCACGAGCACTTGTAGNGGCCGAAGGTATCTCGACAAGCTGCCGGATGTGNACCAATAATGCGCAAGTAGTCAATCCGAAATTGACGATTCGGNGCCTCTGGCCTTCGGTGCTGTANCCAGTTCCAAACGTGCCCGTTCTTGCTGCAAGGTTCGTGCTTTCCTAGACCACAGCGGGCTTTCCTACTACAGTTGGTGGAAGGTGGATGCCAGTACT] [+] EMBL AL695701 [GCAGAATTCCCCGAGGTAAAATAAAAAAAAACCACTCACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTGTGGCGCTATTGCATCAATTGCAACGAGGATACCGCATCAAAATGTGGCAAAATTGCAGCGAATCAATCTCGTCCGTCGGATGGCTACCGGAGCGGCACCGAAAAAACCAACAGCACACTGGGACTGGCTGTGAAGGGAATGGCAATCGGTGCCCTGGTCGGCACCGGCTGGTCCGGTTACAGCTACTTCAAGGGCGGTCCCACAGATCATATGCTGCACGAGCACTTGTAGNGGCCGAAGGTATCTCGACAAGCTGCCGGATGTGNACCAATAATGCGCAAGTAGTCAATCCGAAATTGACGATTCGGNGCCTCTGGCCTTCGGTGCTGTANCCAGTTCCAAACGTGCCCGTTCTTGCTGCAAGGTTCGTGCTTTCCTAGACCACAGCGGGCTTTCCTACTACAGTTGGTGGAAGGTGGATGCCAGTACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6833#0 CCGCGGACGCGTGGGCGGACGCGTGGGGTTTTGTTATGAAAACCCGGCTGATTACGACAA 60 consensus_6833#2 -----------------------------------------CCGCCCACGCGTCCGACAA 19 consensus_6833#3 ------------------------------------------------------------ consensus_6833#1 ------------------------------------------------------------ consensus_6833#0 AATAAGAAATTTTATCGGCAGATAGGTGCATTATATTTGGAAATAAAAAAAAACCCACTC 120 consensus_6833#2 AATAAGAAATTTTATCGGCAGATAGGTGCATTATATTTGGAAATAAAAAAAAACCCACTC 79 consensus_6833#3 -----------------GCAGAATTCCCCGAGGTA-----AAATAAAAAAAAACC-ACTC 37 consensus_6833#1 ------------------------AATTCCCCGCNGGTTTAAATAAAAAAA---CCACTC 33 * *********** * **** consensus_6833#0 ACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTG-GGCGCTATTGCAT 179 consensus_6833#2 ACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTG-GGCGCTATTGCAT 138 consensus_6833#3 ACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTGTGGCGCTATTGCAT 97 consensus_6833#1 ACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTG-GGCGCTATTGCAT 92 ********************************************** ************* consensus_6833#0 CAATTGCAACGAGGATACCGCATCAAAATGTGGCAAAATTGCAGCGAATCAATCTCGTCC 239 consensus_6833#2 CAATTGCAACGAGGATACCGCATCAAAATGTGGCAAAATTGCAGCGAATCAATCTCGTCC 198 consensus_6833#3 CAATTGCAACGAGGATACCGCATCAAAATGTGGCAAAATTGCAGCGAATCAATCTCGTCC 157 consensus_6833#1 CAATTGCAACGAGGATACCGCATCAAAATGTGGCTAAATTGCAGCGAATCAATCTCGTCC 152 ********************************** ************************* consensus_6833#0 GTCGGATGGCTACCGGAGCGGCACCGAAAAAACCAACCAGCACACTGGGACTGGCTGTGA 299 consensus_6833#2 GTCGGATGGCTACCGGAGCGGCACCGAAAAAACCAACCAGCACACTGGGACTGGCTGTGA 258 consensus_6833#3 GTCGGATGGCTACCGGAGCGGCACCGAAAAAACCAAC-AGCACACTGGGACTGGCTGTGA 216 consensus_6833#1 GTCGGATGGCTACCGGAGCGGGACCGAAAAAACCAACCAGCACACTAGGACTGGCTGTGA 212 ********************* *************** ******** ************* consensus_6833#0 AGGGAATGGCAATCGGTGCCCTGGTCGGCACCGGCTGGTCCGGTTACAGCTACTTCAAGG 359 consensus_6833#2 AGGGAATGGCAATCGGTGCCCTGGTCGGCACCGGCTGGTCCGGTTACAGCTACTTCAAGG 318 consensus_6833#3 AGGGAATGGCAATCGGTGCCCTGGTCGGCACCGGCTGGTCCGGTTACAGCTACTTCAAGG 276 consensus_6833#1 AGGGAATGGCAATCGGTGCCCTGGTCGGCAC-GGCTGGTCCGGTTACAGCTACTTCAAGG 271 ******************************* **************************** consensus_6833#0 GCGGTCCCACAGATCATATGCTGCACGAGCA--TGTAGGG-CCGAAGGT-TCTCGACAAG 415 consensus_6833#2 GCGGTCCCACAGATCATATGCTGCACGAGCA--TGTAGGG-CCGAAGGT-TCTCGACAAG 374 consensus_6833#3 GCGGTCCCACAGATCATATGCTGCACGAGCACTTGTAGNGGCCGAAGGTATCTCGACAAG 336 consensus_6833#1 GCGGTCCCACAGATCATATGCTGCACGAGCA--TGTAGGG-CCGAAGGT-TCTCGACAAG 327 ******************************* ***** * ******** ********** consensus_6833#0 CTGCCGGATGTGAA--AATAATGCGCAAAGTAGTCAATCCGAA--TGACG-ATTCGGG-- 468 consensus_6833#2 CTGCCGGATGTGAA--AATAATGCGCAAAGTAGTCAATCCGAA--TGACG-ATTCGGG-- 427 consensus_6833#3 CTGCCGGATGTGNACCAATAATGCGCAA-GTAGTCAATCCGAAATTGACG-ATTCGGNGC 394 consensus_6833#1 CTGCCGGATGTGAA--AATAATGCGCAAAGTAGTCAATCCGAA--TGATGCATTCGGG-- 381 ************ * ************ ************** *** * ****** consensus_6833#0 --CTTGGATTTGGTGCTGT-TCCAGTTCCAAACGTGCCCGTTCT-GCTGCAAGGTTCGT- 523 consensus_6833#2 --CTTGGATTTGGTGCTGT-TCCAGTTCCAAACGTGCCCGTTCT-GCTGCAAGGTTCGT- 482 consensus_6833#3 CTCTGGCCTTCGGTGCTGTANCCAGTTCCAAACGTGCCCGTTCTTGCTGCAAGGTTCGT- 453 consensus_6833#1 --CTTGGATTTGGTGCTGT-TCCAGTTCCAAACGTGCCCGTTCT-GCTGCAAGGTTCGTA 437 ** * ** ******** *********************** ************** consensus_6833#0 GCT-TTCCTAGACCACAGCGGGCTTTCCTACT-CAGT-GGTGGA-GGTGG-ATGC-AGTA 577 consensus_6833#2 GCT-TTCCTAGACCACAGCGGGCTTTCCTACT-CAGT-GGTGGA-GGTGG-ATGC-AGTA 536 consensus_6833#3 GCT-TTCCTAGACCACAGCGGGCTTTCCTACTACAGTTGGTGGAAGGTGG-ATGCCAGTA 511 consensus_6833#1 GCTATTCCTAGACCACAGCGGGCTTTCCTACTCAGATGGTAGGACNGTGGCATGC-AGTA 496 *** **************************** * * *** **** **** **** consensus_6833#0 CTTC---GTCAGGACATTCGCT--GGTCGG-ACAGTAAAA-AAGTTCCAATTTTGCTAG- 629 consensus_6833#2 CTTC---GTCAGGACATTCGCT--GGTCGG-ACAGTAAAA-AAGTTCCAATTTTGCTAG- 588 consensus_6833#3 CT---------------------------------------------------------- 513 consensus_6833#1 CTTTCAGNTCAGGACATTCGACTGNGTCGGCACAGNAAAACAAGTTCCAATTATAGCATA 556 ** consensus_6833#0 --CGAAAAC--GAAATCGGGCAA-ATACGTTC--AGCTAA-CGGACTCGAGCATGATAG- 680 consensus_6833#2 --CGAAAAC--GAAATCGGGCAA-ATACGTTC--AGCTAA-CGGACTCGAGCATGATAG- 639 consensus_6833#3 ------------------------------------------------------------ consensus_6833#1 GCCGAAAACCGANAATCGGGCNACATACCGTACAAGCTAAACGGACTCGAAGACAATGAA 616 consensus_6833#0 ----TGTC-CTCGA--TTTCCAGCTT------CCTTCGGGACAAGAAGCAAG--ACATC- 724 consensus_6833#2 ----TGTC-CTCGA--TTTCCAGCTT------CCTTCGGGACAAGAAGCAAG--ACATC- 683 consensus_6833#3 ------------------------------------------------------------ consensus_6833#1 TAGATGTNACTCGAATCTTCCAGCCTATCCTATCGGCNGCACAAGAAGCNAAGAACATCA 676 consensus_6833#0 GGCGAGCT---AGCCAAATACTATCCGTCGATATCGTACGAAAACGATGCGGGACGAAAA 781 consensus_6833#2 GGCGAGCT---AGCC--------------------------------------------- 695 consensus_6833#3 ------------------------------------------------------------ consensus_6833#1 GGCGANCACTAGGCCAAATACTATCCGN-------------------------------- 704 consensus_6833#0 GTGTTCGACATTATGAACAAATATTTCCTGATGTATCANGAAAAGAAGGTCGACAATCGT 841 consensus_6833#2 ------------------------------------------------------------ consensus_6833#3 ------------------------------------------------------------ consensus_6833#1 ------------------------------------------------------------ consensus_6833#0 ACAAAGGAAGAGCAAGAGGAGGAGCGCAAGTGGCGTGCCTGGGCCGACGATCATTTTGGT 901 consensus_6833#2 ------------------------------------------------------------ consensus_6833#3 ------------------------------------------------------------ consensus_6833#1 ------------------------------------------------------------ consensus_6833#0 GCA 904 consensus_6833#2 --- consensus_6833#3 --- consensus_6833#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||