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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6845#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 852 fasta sequence
[GAATCCCCCGAGGTTNCAGCATGGCGTTTGAATATACGGAAAT-ACGGATCCACTGTTCGTGGAGAACAAGGGACAAACGGGAGAGGATGACTACATCATGGTGCGTGCGAAACAGTACAGTCATGTGCCGATTAAGATTCCCAACTGGACGCCACAGGCTCACTGCTACACAACTCTGTTTAAGCAGTACGAGCAGGAACTCCTTGAAGCGGAAGTGTATCCAGATGATGTGTGGGTCATTTCCTATCCGAAGAGTGGAACGACCTGGACTCAAGAGATGGTTTGGCTGATCTGTAACGATCTTAACTTTGAAGCAGCGCGAGCAGAATCTTTACAAATCCGCTTCCCTTTTCTGGATGTTAGTTTAATACATCCCACTGATACGAGTTCATTTGAGCGTGCAAAAAATACACCACGTCCTCGCTTCATCAAGACGCATCTTCCAGTGTCCATGCTGCCGAGGCGCTACTGGGAAGTCAAACCCAAAACCATACACATTCGGCGCAACCCAAAGTCG-GTGGCCGTTTCGTACTTTTATCACTCCCA-GGGCATCCATTACCGTGGCTCGATGGATACCTTTCTGCGATCGTTTGTTCGTGAGCATCAG-TTTTACTCACCGTACCATGCGCATGTGATCGAGTACCATGAGCTGCAGGATTGCGATAACATCCTATACCTTTCGTTCGAAGAGCATGAAACACTATCTGGCATCGGTNGTGAGGAANGTGTGTGAGTAACACCGGGCAAAACGTTACCAGCAAGGCCTTGGAACCTGGAACTTGCTGTAACCAG-ACCTTTCCTTCAAGTCGATGGCGTGACAATCCAACTTGGTCACCTATTAAAAGGCGNAGA]
[+] EMBL AL695054 [GAATCCCCCGAGGTTNCAGCATGGCGTTTGAATATACGGAAAT ACGGATCCACTGTTCGTGGAGAACAAGGGACAAACGGGAGAGGATGACTACATCATGGTGCGTGCGAAACAGTACAGTCATGTGCCGATTAAGATTCCCAACTGGACGCCACAGGCTCACTGCTACACAACTCTGTTTAAGCAGTACGAGCAGGAACTCCTTGAAGCGGAAGTGTATCCAGATGATGTGTGGGTCATTTCCTATCCGAAGAGTGGAACGACCTGGACTCAAGAGATGGTTTGGCTGATCTGTAACGATCTTAACTTTGAAGCAGCGCGAGCAGAATCTTTACAAATCCGCTTCCCTTTTCTGGATGTTAGTTTAATACATCCCACTGATACGAGTTCATTTGAGCGTGCAAAAAATACACCACGTCCTCGCTTCATCAAGACGCATCTTCCAGTGTCCATGCTGCCGAGGCGCTACTGGGAAGTCAAACCCAAAACCATACACATTCGGCGCAA CCAAAGTCGCGTGGCCGTTTCGTACTTTTATCACTCCCAGGGGCATCCATTACCGTGGCTCGATGGATACCTTTCTGCGATCG TCGTTCGTGAGCATCAGTTTTTACTCACCGTACCATGCGCATGTGATCGAGTACCATGAGCTGCAGGATTGCGATAACATCCTATACCTTTCGTTCGAAGAGCATGAAACACTATCTGGCATCGGTNGTGAGGAANGTGTGTGAGTAACACCGGGCAAAACGTTACCAGCAAGGCCTTGGAACCTGGAACTTGCTGTAACCAG ACCTTTCCTTCAAGTCGATGGCGTGACAATCCAACTTGGTCACCTATTAAAAGGCGNAGA]
[+] EMBL BM576439 [ CCGCGGAAGCAGCATGGCGTTTGAATATACGGAAATAACGGATCCACTGTTCGTGGAGAACAAGGGACAAACGGGAGAGGATGACTACATCATGGTGCGTGCGAAACAGTACAGTCATGTGCCGATTAAGATTCCCAACTGGACGCCACAGGCTCACTGCTACACAACTCTGTTTAAGCAGTACGAGCAGGAACTCCTTGAAGCGGAAGTGTATCCAGATGATGTGTGGGTCATTTCCTATCCGAAGAGTGGAACGACCTGGACTCAAGAGATGGTTTGGCTGATCTGTAACGATCTTAACTTTGAAGCAGCGCGAGCAGAATCTTTACAAATCCGCTTCCCTTTTCTGGATGTTAGTTTAATACATCCCACTGATACGAGTTCATTTGAGCGTGCAAAAAATACACCACGTCCTCGCTTCATCAAGACGCATCTTCCAGTGTCCATGCTGCCGAGGCGCTACTGGGAAGTCAAACCCAAAACCATACACATTCGGCGCAACCCAAAGTCG GTGGCCGTTTCGTACTTTTATCACTCCCA GGGCATCCATTACCGTGGCTCGATGGATACCTTTCTGCGATCGTTTGTTCGTGAGCATCAG TTTTACTCACCGTACCATGCGCATGTGATCGAGTACCATGAGCTGCAGGATTGCG ]
[+] EMBL BM588756 [ ccgcCCAGATGATGTGTGGGTCATTTCCTATCCGAAGAGTGGAACGACCTGGACTCAAGAGATGGTTTGGCTGATCTGTAACGATCTTAACTTTGAAGCAGCGCGAGGAGAATCTTTACAAATCCGCTTCCCTTTTCTGGATGTTAGTTTAATACATCCCACTGATACGAGTTCATTTGAGCGTGCAAAAAATACGCCACGTCCTCGCTTCATCAAGACGCATCTTCCCGTGTCCATGCTGCCGAAGCGCTACTGGGAAGTCAAACCCAAAACCATACACATTCGGCGCAACCCAAAGTCG GTGGCCGTTTCGTACTTCTTTCACTCACA GGGCATCCATTACCGTGGCTCGATGGATACCTTTCTGCGATCGTTTGTTCGTGAGCATCAG TTTTACTCACCGTACCATGCGCACGTGATCGAGTACCATGAGCTACAAGATTGCGATAACATCCTATACCTTTCGTTCGAAGAG ATGAAACACTATCTGCCATCGGTCGTGAGGAAGGTGTGTGAGTTTTTC GGCAAAACG TA CAGCAA GCC GG AGCTGGAAC TGCTGT ACCAGCACCTTTCCTTTAAGTCGAT ]
consensusID : consensus_6845#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 684 fasta sequence
[CCGCTGGACGCTTCGGAAGCAGCATGTCGTTTGAATATACGGAAATAACGGATCCACTGTTCGTGGAGAACAAGGGACAAACGGGAGAGGATGACTACATCATGGTGCGTGCGAAACAGTACAGTCATGTGCCGATTAAGATTCCCAACTGGACGCCACAGGCTCACTGCTACACAACTCTGTTTAAGCAGTACGAGCAGGAACTCCTTGAAGCGGAAGTGTACCCAGATGATGTGTGGGTCATTTCCTATCCGAAGAGTGGAACGACCTGGACTCAAGAGATGGTTTGGCTGATCTGTAACGATCTTAACTTTGAAGCAGCGCGAGGAGAATCTTTACAAATCCGCTTCCCTTTTCTGGATGTTAGTTTAATACATCCCACTGATACGAGTTCATTTGAGCGTGCAAAAAATACGCCACGTCCTCGCTTCATCAAGACGCATCTTCCCGTGTCCATGCTGCCGAAGCGCTACTGGGAAGTCAAACCCAAAACCATACACATTCGGCGCAACCCAAAGTCGGTGGCCGTTTCGTACTTCTTTCACTCACA-GGGCATCCATTACCGTGGCTCGATGGATACCTTTCTGCGATCGTTTGTTCGTGAGCATCAGTTTTACTCACCGTACCATGCGCACGTGATCGAGTACCATGAGCTACAAGATTGCGATAACATCCTATACCTTT]
[+] EMBL BM616301 [CCGCTGGACGCTTCGGAAGCAGCATGTCGTTTGAATATACGGAAATAACGGATCCACTGTTCGTGGAGAACAAGGGACAAACGGGAGAGGATGACTACATCATGGTGCGTGCGAAACAGTACAGTCATGTGCCGATTAAGATTCCCAACTGGACGCCACAGGCTCACTGCTACACAACTCTGTTTAAGCAGTACGAGCAGGAACTCCTTGAAGCGGAAGTGTACCCAGATGATGTGTGGGTCATTTCCTATCCGAAGAGTGGAACGACCTGGACTCAAGAGATGGTTTGGCTGATCTGTAACGATCTTAACTTTGAAGCAGCGCGAGGAGAATCTTTACAAATCCGCTTCCCTTTTCTGGATGTTAGTTTAATACATCCCACTGATACGAGTTCATTTGAGCGTGCAAAAAATACGCCACGTCCTCGCTTCATCAAGACGCATCTTCCCGTGTCCATGCTGCCGAAGCGCTACTGGGAAGTCAAACCCAAAACCATACACATTCGGCGCAACCCAAAGTCGGTGGCCGTTTCGTACTTCTTTCACTCACA GGGCATCCATTACCGTGGCTCGATGGATACCTTTCTGCGATCGTTTGTTCGTGAGCATCAGTTTTACTCACCGTACCATGCGCACGTGATCGAGTACCATGAGCTACAAGATTGCGATAACATCCTATACCTTT]
[+] EMBL BM581761 [ ccGGACGCTTCGGAAGCAGCATGTCGTTTGAATATACGGAAATAACGGATCCACTGTTCGTGGAGAACAAGGGACAAACGGGAGAGGATGACTACATCATGGTGCGTGCGAAACAGTACAGTCATGTGCCGATTAAGATTCCCAACTGGACGCCACAGGCTCACTGCTACACAACTCTGTTTAAGCAGTACGAGCAGGAACTCCTTGAAGCGGAAGTGTACCCAGATGATGTGTGGGTCATTTCCTATCCGAAGAGTGGAACGACCTGGACTCAAGAGATGGTTTGGCTGATCTGTAACGATCTTAACTTTGAAGCAGCGCGAGGAGAATCTTTACAAATCCGCTTCCCTTTTCTGGATGTTAGTTTAATACATCCCACTGATACGAGTTCATTTGAGCGTGCAAAAAATACGCCACGTCCTCGCTTCATCAAGACGCATCTTCCCGTGTCCATGCTGCCGAAGCGCTACTGGGAAGTCAAACCCAAAACCATACACATTCGGCGCAACCCAAAGTCGGTGGCCGTTTCGTACTTCTTTCACTCACAGGGGCATCCATTACCGTGGCTCGATGGATACCTTTCTGCGATCGTTTGTTCGTGAGCATCAGTTTTACTCACCGTACCATGCGCACGTGAT ]
consensusID : consensus_6845#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence
[CCCCCGAGTTACTTCGGAAGCAGCATGTCGCCCTGAATACTCGAAATAACGGATCCACTGTTCGTGGAGAACAAGGGACAAACGGGAGAGGATGACTACATCATGGTGCGTGCGAAACAGTACAGTCATGTGCCGATTAAGATTCCCAACTGTACGCCACAGGCTCACTGCTACACAACTCTGTTTAAGCAGTACGAGCAGGAACTCCTTGAAGCGGAAGATGTACCCAGATGATGTGTGGGTCATTTCCTATCCGAAGAGTGGAACTNTACCTGGACTCAAGAGATGGTTTGGCTGATCTGTAATGATCTTAACTTTGAAGCAGCGCGAGCAGAATCTTTACAAATCCGNCTTCCCTTTTCTGGATGTTAGTTTAATACATCCCACTGATACGAGTTCATTTGAGCGTGCAAAAAATACACCACGTCCTCGCTTCATCAAGACGCATCTTCCAGTGTCCATGCTGCCGAAGCGCTACTGGGAAGTCAAACCCAAAACCATACACATTCGGCGCAACCCAAAGTCGGTGGCCGTTTCGTACTTCTTTCACTCACAAGGCATCCATTACCGTGGCTCGATGGATACCTTTCTGCGATCGTNGTCGTGAGCATCAGTTTACTCACCGGTACCATGCGCACGT]
[+] EMBL AL933536 [CCCCCGAGTTACTTCGGAAGCAGCATGTCGCCCTGAATACTCGAAATAACGGATCCACTGTTCGTGGAGAACAAGGGACAAACGGGAGAGGATGACTACATCATGGTGCGTGCGAAACAGTACAGTCATGTGCCGATTAAGATTCCCAACTGTACGCCACAGGCTCACTGCTACACAACTCTGTTTAAGCAGTACGAGCAGGAACTCCTTGAAGCGGAAGATGTACCCAGATGATGTGTGGGTCATTTCCTATCCGAAGAGTGGAACTNTACCTGGACTCAAGAGATGGTTTGGCTGATCTGTAATGATCTTAACTTTGAAGCAGCGCGAGCAGAATCTTTACAAATCCGNCTTCCCTTTTCTGGATGTTAGTTTAATACATCCCACTGATACGAGTTCATTTGAGCGTGCAAAAAATACACCACGTCCTCGCTTCATCAAGACGCATCTTCCAGTGTCCATGCTGCCGAAGCGCTACTGGGAAGTCAAACCCAAAACCATACACATTCGGCGCAACCCAAAGTCGGTGGCCGTTTCGTACTTCTTTCACTCACAAGGCATCCATTACCGTGGCTCGATGGATACCTTTCTGCGATCGTNGTCGTGAGCATCAGTTTACTCACCGGTACCATGCGCACGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6845#0 ------GAATCCCCCGAGGTTNCAGCATGGCGTT-TGAATATACGGAAATA-CGGATCCA 52
consensus_6845#1 -CCGCTGGACGCTTCGGAA--GCAGCATGTCGTT-TGAATATACGGAAATAACGGATCCA 56
consensus_6845#2 CCCCCGAGTTACTTCGGAA--GCAGCATGTCGCCCTGAATACTCG-AAATAACGGATCCA 57
* ** ******* ** ****** ** ***** ********
consensus_6845#0 CTGTTCGTGGAGAACAAGGGACAAACGGGAGAGGATGACTACATCATGGTGCGTGCGAAA 112
consensus_6845#1 CTGTTCGTGGAGAACAAGGGACAAACGGGAGAGGATGACTACATCATGGTGCGTGCGAAA 116
consensus_6845#2 CTGTTCGTGGAGAACAAGGGACAAACGGGAGAGGATGACTACATCATGGTGCGTGCGAAA 117
************************************************************
consensus_6845#0 CAGTACAGTCATGTGCCGATTAAGATTCCCAACTGGACGCCACAGGCTCACTGCTACACA 172
consensus_6845#1 CAGTACAGTCATGTGCCGATTAAGATTCCCAACTGGACGCCACAGGCTCACTGCTACACA 176
consensus_6845#2 CAGTACAGTCATGTGCCGATTAAGATTCCCAACTGTACGCCACAGGCTCACTGCTACACA 177
*********************************** ************************
consensus_6845#0 ACTCTGTTTAAGCAGTACGAGCAGGAACTCCTTGAAGCGGAAG-TGTATCCAGATGATGT 231
consensus_6845#1 ACTCTGTTTAAGCAGTACGAGCAGGAACTCCTTGAAGCGGAAG-TGTACCCAGATGATGT 235
consensus_6845#2 ACTCTGTTTAAGCAGTACGAGCAGGAACTCCTTGAAGCGGAAGATGTACCCAGATGATGT 237
******************************************* **** ***********
consensus_6845#0 GTGGGTCATTTCCTATCCGAAGAGTGGAACGA--CCTGGACTCAAGAGATGGTTTGGCTG 289
consensus_6845#1 GTGGGTCATTTCCTATCCGAAGAGTGGAACGA--CCTGGACTCAAGAGATGGTTTGGCTG 293
consensus_6845#2 GTGGGTCATTTCCTATCCGAAGAGTGGAACTNTACCTGGACTCAAGAGATGGTTTGGCTG 297
****************************** **************************
consensus_6845#0 ATCTGTAACGATCTTAACTTTGAAGCAGCGCGAGCAGAATCTTTACAAATCCGC-TTCCC 348
consensus_6845#1 ATCTGTAACGATCTTAACTTTGAAGCAGCGCGAGGAGAATCTTTACAAATCCGC-TTCCC 352
consensus_6845#2 ATCTGTAATGATCTTAACTTTGAAGCAGCGCGAGCAGAATCTTTACAAATCCGNCTTCCC 357
******** ************************* ****************** *****
consensus_6845#0 TTTTCTGGATGTTAGTTTAATACATCCCACTGATACGAGTTCATTTGAGCGTGCAAAAAA 408
consensus_6845#1 TTTTCTGGATGTTAGTTTAATACATCCCACTGATACGAGTTCATTTGAGCGTGCAAAAAA 412
consensus_6845#2 TTTTCTGGATGTTAGTTTAATACATCCCACTGATACGAGTTCATTTGAGCGTGCAAAAAA 417
************************************************************
consensus_6845#0 TACACCACGTCCTCGCTTCATCAAGACGCATCTTCCAGTGTCCATGCTGCCGAGGCGCTA 468
consensus_6845#1 TACGCCACGTCCTCGCTTCATCAAGACGCATCTTCCCGTGTCCATGCTGCCGAAGCGCTA 472
consensus_6845#2 TACACCACGTCCTCGCTTCATCAAGACGCATCTTCCAGTGTCCATGCTGCCGAAGCGCTA 477
*** ******************************** **************** ******
consensus_6845#0 CTGGGAAGTCAAACCCAAAACCATACACATTCGGCGCAACCCAAAGTCGGTGGCCGTTTC 528
consensus_6845#1 CTGGGAAGTCAAACCCAAAACCATACACATTCGGCGCAACCCAAAGTCGGTGGCCGTTTC 532
consensus_6845#2 CTGGGAAGTCAAACCCAAAACCATACACATTCGGCGCAACCCAAAGTCGGTGGCCGTTTC 537
************************************************************
consensus_6845#0 GTACTTTTATCACTCCCAGGGCATCCATTACCGTGGCTCGATGGATACCTTTCTGCGATC 588
consensus_6845#1 GTACTTCTTTCACTCACAGGGCATCCATTACCGTGGCTCGATGGATACCTTTCTGCGATC 592
consensus_6845#2 GTACTTCTTTCACTCACAAGGCATCCATTACCGTGGCTCGATGGATACCTTTCTGCGATC 597
****** * ****** ** *****************************************
consensus_6845#0 GTTTGTTCGTGAGCATCAGTTTTACTCACCG-TACCATGCGCATGTGATCGAGTACCATG 647
consensus_6845#1 GTTTGTTCGTGAGCATCAGTTTTACTCACCG-TACCATGCGCACGTGATCGAGTACCATG 651
consensus_6845#2 GTNG--TCGTGAGCATCAGTTT-ACTCACCGGTACCATGCGCACGT-------------- 640
** **************** ******** *********** **
consensus_6845#0 AGCTGCAGGATTGCGATAACATCCTATACCTTTCGTTCGAAGAGCATGAAACACTATCTG 707
consensus_6845#1 AGCTACAAGATTGCGATAACATCCTATACCTTT--------------------------- 684
consensus_6845#2 ------------------------------------------------------------
consensus_6845#0 GCATCGGTNGTGAGGAANGTGTGTGAGTAACACCGGGCAAAACGTTACCAGCAAGGCCTT 767
consensus_6845#1 ------------------------------------------------------------
consensus_6845#2 ------------------------------------------------------------
consensus_6845#0 GGAACCTGGAACTTGCTGTAACCAGACCTTTCCTTCAAGTCGATGGCGTGACAATCCAAC 827
consensus_6845#1 ------------------------------------------------------------
consensus_6845#2 ------------------------------------------------------------
consensus_6845#0 TTGGTCACCTATTAAAAGGCGNAGA 852
consensus_6845#1 -------------------------
consensus_6845#2 -------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||