These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6857#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 907 fasta sequence [CGGTTATNATATATTGCTGTACTNTGCCATGTGCNTGATANTGGGCTACATTGTNTTACTGGTGTATCAGGTGTTGCTGTACGAGGAGCAACAGCTGGTGCGGTGTATAGCGACACCCGATTACAATAACCTCCGAAGTGCATCGCGTAGCACCACGGCAACGAACAATACCGTACCAGACAGACATACNGGTGCTATACTATATCAAAGGTTCATACNGACCTGGGACNGCTNGGCCGTATTCCTGGTCGANATTGCCTGACTTGCGCTTACCCTANAATCGGTCTTATCCCCGGGGCNNACCCGGTATACCCCTTTGACACCAGACCGTAGCAATTAGNAGGAAGCTAGAATACGCGGTAACATACCCACAAGGAGGTACACCGGATTTAGNGAACCNCCCGAAAGCTGGTTCNTGGACATATGGCTCTAGGCCAANCANCGGGAAGACGACCGAAACACCAATTATGGGTCCTGGANTNTGCGCTGGTGANNCCAAAAATNATTACACTGGTGGGNACCCCTATACCACTATGCNCGGACTCACGGCCATATCNCAAAGGANATANTACCCCNGGATTTNCACCTAANAGCTCCAAATGTACTGTGAGATNGACTTACTGGAGGTCGAATTAACGCGTACCCGCCCCGGNCCTTTTGACGTTTGACCTTATGACGACCAGGGGGCAGATCCTGGGCGCGAAAGGGACAGTCAATTCGAAATATGAGATTACCCCGCTAATCACCNATCCAATGTTCCTTATAACACAAGCCACAACCGTGTTGGGTGATACACACAAAGGTCACAACTACTACCGGCTGTAACCCCCAAGAGTCTGGACACCGCAAGTGACGCAACCCCTATACAACACAAAAAGAACNCCGCNGACAACCTCTACTGACATAA] [+] EMBL AL693313 [CGGTTATNATATATTGCTGTACTNTGCCATGTGCNTGATANTGGGCTACATTGTNTTACTGGTGTATCAGGTGTTGCTGTACGAGGAGCAACAGCTGGTGCGGTGTATAGCGACACCCGATTACAATAACCTCCGAAGTGCATCGCGTAGCACCACGGCAACGAACAATACCGTACCAGACAGACATACNGGTGCTATACTATATCAAAGGTTCATACNGACCTGGGACNGCTNGGCCGTATTCCTGGTCGANATTGCCTGACTTGCGCTTACCCTANAATCGGTCTTATCCCCGGGGCNNACCCGGTATACCCCTTTGACACCAGACCGTAGCAATTAGNAGGAAGCTAGAATACGCGGTAACATACCCACAAGGAGGTACACCGGATTTAGNGAACCNCCCGAAAGCTGGTTCNTGGACATATGGCTCTAGGCCAANCANCGGGAAGACGACCGAAACACCAATTATGGGTCCTGGANTNTGCGCTGGTGANNCCAAAAATNATTACACTGGTGGGNACCCCTATACCACTATGCNCGGACTCACGGCCATATCNCAAAGGANATANTACCCCNGGATTTNCACCTAANAGCTCCAAATGTACTGTGAGATNGACTTACTGGAGGTCGAATTAACGCGTACCCGCCCCGGNCCTTTTGACGTTTGACCTTATGACGACCAGGGGGCAGATCCTGGGCGCGAAAGGGACAGTCAATTCGAAATATGAGATTACCCCGCTAATCACCNATCCAATGTTCCTTATAACACAAGCCACAACCGTGTTGGGTGATACACACAAAGGTCACAACTACTACCGGCTGTAACCCCCAAGAGTCTGGACACCGCAAGTGACGCAACCCCTATACAACACAAAAAGAACNCCGCNGACAACCTCTACTGACATAA] consensusID : consensus_6857#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 871 fasta sequence [CCGAGGTTACAGCAAACAAAAGGTGATCATATCGGTTGCTTTTCTCCTCTTCACGGAAAGTTTGCTCGCTGTAGAAAATACCGCGATCGAATCGTAGAGTTAGTTAACCTTGAAAGTAGCTACCGCCAAAGAGCAGTGTTCGTTTGCGAAACGTTTCCGTTTGTAGCGAGAATAAAATTTAGTTAGCGATGGATATGATTGCTGTAGTTGGCAGTGCCATGATAGTGGGCTTCATTGTTTACTGGTGTATCAGGTGTTGCTGTACGAGGAGCAACAGTGGTGCGGTGTTAGCGACACCCATTACAATAACCTCCGAAGTGCATCGCGTTGCACCACCGGGAACGACACAAACCGTACCACCACCATCCGGTGCTATCATTCAAGGTCATCCGACCGGGACGGCGGCGTATCCGGCAATGCCGACTGCGTACCCAACGTCTTCCCCGGCACCGTACCCTGCCCAGCCGTACATGCAGCACTATCCGTATCAAACGTCCGCTGCCCCAACGTCGATGCCACCACCGCAGCCGA-ACACTGCCGCTTCCGTCCAATTTCCGGCCCTTCCTTCGCAGATGCAGATTCCGATACTACCATCGGCCTCGGCTCCTCCCGCTGGTGCTGCCGGACCGGCAGCGAT-GATGAATCCTCCCAGCTACGACCAAGTGGTAAACAACTCGTACCCAGTGCAGGCACCTTACAATCCCGACTTCAAAGGCTAAACGACGATGGCCGTACGGGCCCCTGGAGAGGAGACTTAAAGTTCAGGAACAAACGGTGAACCACAGTGAACCACACGCTGGAGGCGGTTTAGGAAAGAAAGCTTTCCTAGTGCCATCCTAGACGAGCAACTAGCGTAATTGTCGCCGTGTTA] [+] EMBL AL695301 [CCGAGGTTACAGCAAACAAAAGGTGATCATATCGGTTGCTTTTCTCCTCTTCACGGAAAGTTTGCTCGCTGTAGAAAATACCGCGATCGAATCGTA AGTTAGTTNACCTTGAAAGTAGCTACCGCCAAAGAGCAGTGTTCGTTTGCGAAACGTTTCCGTTTGTAGCGAGAATAAAATTTA TTAGCGATGGATATGATTGCTGTA TTGGCAGTGCCATGATAGTGGGCTTCATTGTTTACTGGTGTATCAGGTGTTGCTGTACGAGGAGCAACAGTGGTGCGGTGTTAGCGACACCCATTACAATAACCTCCGAAGTGCATCGCGTTGCACCACCGGGAACGACACAAACCGTACCACCACCATCCGGTGCTATCATTCAAGGTCATCCGACCGGGACGGCGGCGTATCCGGCAATGCCGACTG GTA CCAACGTCTTCCCCGG A CGTAACCTGCCCAGCCGTACATGCAGCACTATCCGTATCACACGTCCGCTGCCCCAACGTCGATGCCACCACCGCAG CGACACACTG CG TTCCGT CAATTTACGGCCCTT CTTCGCA ATGNNGNT CGATA TACAATCAGGCTCGG TCCTCCCG TGGTGCTGC GACCGG AGCGATAGATGAATC ] [+] EMBL BM640862 [ ccgCGGAAAGTTTGCTCGCTGTAGAAAATACCGCGATCGAATCGTAGAGTTAGTTAACCTTGAAAGTAGCTACCGCCAAAGAGCAGTGTTCGTTTGCGAAACGTTTCCGTTTGTAGCGAGAATAAAATTTAGTTAGCGATGGATATGATTGCTGTAGTTGGCAGTGCCATGATAGTGGGCTTCATTGTTTACTGGTGTATCAGGTGTTGCTGTACGAGGAGCAACAGTGGTGCGGTGTTAGCGACACCCATTACAATAACCTCCGAAGTGCATCGCGTTGCACCACCGGGAACGACACAAACCGTACCACCACCATCCGGTGCTATCATTCAAGGTCATCCGACCGGGACGGCGGCGTATCCGGCAATGCCGACTGCGTACCCAACGTCTTCCCCGGCACCGTACCCTGCCCAGCCGTACATGCAGCACTATCCGTATCAAACGTCCGCTGCCCCAACGTCGATGCCACCACCGCAGCCGA ACACTGCCGCTTCCGTCCAATTTCCGGCCCTTCCTTCGCAGATGCAGATTCCGATACTACCATCGGCCTCGGCTCCTCCCGCTGGTGCTGCCGGACCGGCAGCGAT GATGAATCCTCCCAGCTACGACCAAGTGGTAAACAACTCGTACCCAGTGCAGGCACCTTACAATCCC ] [+] EMBL BX613396 [ TCGTAGATTTAGTTAACCTTGAAAGTAGCTACCGCCAAAGAGCAGTGTTCGTTTGCGAAACGTTTCCGTTTGTAGCGAGAATAAAATTTAGTTAGCGATGGATATGATTGCTGTAGTTGGCAGTGCCATGATAGTGGGCTTCATTGTTTACTGGTGTATCAGGTGTTGCTGTACGAGGAGCAACAGTGGTGCGGTGTTAGCGACACCCATTACAATAACCTCCGAAGTGCATCGCGTTGCACCACCGGGAACGACACAAACCGTACCACCACCATCCGGTGCTATCATTCAAGGTCATCCGACCGGGACGGCGGCGTATCCGGCAATGCCGACTGCGTACCCAACGTCTTCCCCGGCACCGTACCCTGCCCAGCCGTACATGCAGCACTATCCGTATCAAACGTCCGCTGCCCCAACGTCGATGCCACCACCGCAGCCGA ACACTGCCGCTTCCGTCCAATTTCCGGCCCTTCCTTCGCAGATGCAGATTCCGATACTACCATCGGCCTCGGCTCCTCCCGCTGGTGCTGCCGGACCGGCAGCGAT GATGAATCCTCCCAGCTACGACCAAGTGGTAAACAACTCGTACCCAGTGCAGGCACCTTACAATCCCGACTTCAAAGGCTAAACGACGATGGCCGTACGGGCCCCTGGAGAGGAGACTTAAAGTTCAGGAACAAACGGTGAACCACAGTGAACCACACGCTGGAGGCGGTTTAGGAAAGAAAGCTTTCCTAGTGCCATCCTAGACGAGCAACTAGCGTAATTGTCGCCGTGTTA] consensusID : consensus_6857#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 718 fasta sequence [CAGAATTCNCCACGAGGTCNACGATCGAATCGTAGAGTTAGTTAACCTTGAAAGTAGCTACCGCCAAAGAGCAGTGTTCGTTTGCGAAACGTTTCCGTTTGTAGCGAGAATAAAATTTAGTTAGCGATGGATATGATTGCTGTAGTTGGCAGTGCCATGATAGTGGGCTTCATTGTTTACTGGTGTATCAGGTGTTGCTGTACGAGGAGCAACAGTGGTGCGGTGTTAGCGACACCCATTACAATAACCTCCGAAGTGCATCGCGTTGCACCACCGGGAACGACACAAACCGTACCACCACCATCCGGTGCTATCATTCAAGGTCATCCGACCGGGACGGCGGCGTATCCGGCAATGCCGACTGCGTACCCAACGTCTTCCCCGGCACCGTACCCTGCCCAGCCGTACATGCAGCACTATCCGTATCAAACGTCCGCTGCCCCAACGTCGATGCCACCACCGCAGCCGAACACTGCCGCTTCCGTCCAATTTCCGGCCCTTCCTTCGCAGATGCAGATTCCGATACTACCATCGGCTCGGCTCCTCCCGCTGGTGCTGCCGGACCGGCAGCGATGATGAATCCTCCCAGCTACGACCAAGTGGTAAACAACTCGTACCCAGGTGCAGGCACCTTACAATCCCGACTTCAAAGGCTAAACGACGATTGCCGTACGGGCCCCTGNAGAGGAGACTTAAAGNTTCAGGAGACCAACGGTGA] [+] EMBL BX466147 [CAGAATTCNCCACGAGGTCNACGATCGAATCGTAGAGTTAGTTAACCTTGAAAGTAGCTACCGCCAAAGAGCAGTGTTCGTTTGCGAAACGTTTCCGTTTGTAGCGAGAATAAAATTTAGTTAGCGATGGATATGATTGCTGTAGTTGGCAGTGCCATGATAGTGGGCTTCATTGTTTACTGGTGTATCAGGTGTTGCTGTACGAGGAGCAACAGTGGTGCGGTGTTAGCGACACCCATTACAATAACCTCCGAAGTGCATCGCGTTGCACCACCGGGAACGACACAAACCGTACCACCACCATCCGGTGCTATCATTCAAGGTCATCCGACCGGGACGGCGGCGTATCCGGCAATGCCGACTGCGTACCCAACGTCTTCCCCGGCACCGTACCCTGCCCAGCCGTACATGCAGCACTATCCGTATCAAACGTCCGCTGCCCCAACGTCGATGCCACCACCGCAGCCGAACACTGCCGCTTCCGTCCAATTTCCGGCCCTTCCTTCGCAGATGCAGATTCCGATACTACCATCGGCTCGGCTCCTCCCGCTGGTGCTGCCGGACCGGCAGCGATGATGAATCCTCCCAGCTACGACCAAGTGGTAAACAACTCGTACCCAGGTGCAGGCACCTTACAATCCCGACTTCAAAGGCTAAACGACGATTGCCGTACGGGCCCCTGNAGAGGAGACTTAAAGNTTCAGGAGACCAACGGTGA] [+] EMBL AGA284869 [ AAAATTTAGTTAGCGATGGATATGATTGCTGTAGTTGGCAGTGCCATGATAGTGGGCTTCATTGTTTACTGGTGTATCAGGTGTTGCTGTACGAGGAGCAACAGTGGTGCGGTGTTAGCGACACCCATTACAATAACCTCCGAAGTGCATCGCGTTGCACCACCGGGAACGACACAAACCGTACCACCACCATCCGGTGCTATCATTCAAGGTCATCCGACCGGGACGGCGGCGTATCCGGCAATGCCGACTGCGTACCCAACG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6857#1 -------CCGAGGTTACAGCAAACAAAAGGTGATCATATCGGTTGCTTTTCTCCTCTTCA 53 consensus_6857#2 ------------------------------------------------------------ consensus_6857#0 CGGTTATNATATATTGCTGTAC-TNTGCCATGTGCNTGATANTGGGCTACATTGTNTTAC 59 consensus_6857#1 CGGAAAGTTTGCT--CGCTGTAGAAAATACCGCGATCGAATCGTAGAGTTAGTTAACCTT 111 consensus_6857#2 --------CAGAA--TTCNCCACGAGGT-CNACGATCGAATCGTAGAGTTAGTTAACCTT 49 consensus_6857#0 TGGTGTATCAGGTGTTGCTGTACGAGGAGCAACAGCTGGTGCGGTGTAT-AGCGACACCC 118 * * * * * * * ** * * ** * * consensus_6857#1 GAAAGTAGCTACCGCCAAAGAGCA--GTGTTCGTTTGCGA-----AACGTTTCCGTTTGT 164 consensus_6857#2 GAAAGTAGCTACCGCCAAAGAGCA--GTGTTCGTTTGCGA-----AACGTTTCCGTTTGT 102 consensus_6857#0 GATTACAATAACCTCCGAAGTGCATCGCGTAGCACCACGGCAACGAACAATACCGTACCA 178 ** * *** ** *** *** * ** ** *** * **** consensus_6857#1 AGCGAGAATAAAATT----TAGT-TAGCGATGGAT-ATGATTGCTGTAGTTGGCAGTGCC 218 consensus_6857#2 AGCGAGAATAAAATT----TAGT-TAGCGATGGAT-ATGATTGCTGTAGTTGGCAGTGCC 156 consensus_6857#0 GACAGACATACNGGTGCTATACTATATCAAAGGTTCATACNGACCTGGGACNGCTNGGCC 238 * *** * ** * ** * * ** * ** * * ** *** consensus_6857#1 ATGATAGTGGGCTTCATTGTTT-ACTGGTGTAT------CAGGTGTTGCTGTACGAGGAG 271 consensus_6857#2 ATGATAGTGGGCTTCATTGTTT-ACTGGTGTAT------CAGGTGTTGCTGTACGAGGAG 209 consensus_6857#0 GTATTCCTGGTCGANATTGCCTGACTTGCGCTTACCCTANAATCGGTCTTATCCCCGGGG 298 * * *** * **** * *** * * * * * * * * * ** * consensus_6857#1 CAACAGTGGTGCGGTG--TTAGCGACAC-CCATTACAATAACCTCCGAAGTGCATCGCGT 328 consensus_6857#2 CAACAGTGGTGCGGTG--TTAGCGACAC-CCATTACAATAACCTCCGAAGTGCATCGCGT 266 consensus_6857#0 CNNACCCGGTATACCCCTTTGACACCAGACCGTAGCAATTAGNAGGAAGCTAGAATACGC 358 * *** ** * ** ** * **** * * * * ** consensus_6857#1 TGCACCA--CCGGGAACGACACAAACCGTACC--ACCACCATCCGGTGCTATCATTCAAG 384 consensus_6857#2 TGCACCA--CCGGGAACGACACAAACCGTACC--ACCACCATCCGGTGCTATCATTCAAG 322 consensus_6857#0 GGTAACATACCCACAAGGAGGTACACCGGATTTAGNGAACCNCCCGAAAGCTGGTTCNTG 418 * * ** ** ** ** * **** * * * ** * * *** * consensus_6857#1 GTCATCCGAC------CGGGACGGCGGCGTATC--CGGCAATGCCGACTGCGTACCCAAC 436 consensus_6857#2 GTCATCCGAC------CGGGACGGCGGCGTATC--CGGCAATGCCGACTGCGTACCCAAC 374 consensus_6857#0 GACATATGGCTCTAGGCCAANCANCGGGAAGACGACCGAAACACCAATTATGGGTCCTGG 478 * *** * * * * *** * * * ** ** * * * ** consensus_6857#1 GTCTTCCCCGGCACCGTACCCTGCCCAGCCGTACATGCAGCACTATCCGTATCAAACGTC 496 consensus_6857#2 GTCTTCCCCGGCACCGTACCCTGCCCAGCCGTACATGCAGCACTATCCGTATCAAACGTC 434 consensus_6857#0 ANTNTGCGCTG-GTGANNCCAAAAATNATTACACTGGTGGGNACCCCTATACCAC-TATG 536 * * * * ** ** * * * ** ** * consensus_6857#1 CGCTGCCCCAACGTCGATGCCACCACCGCAGCCGAACACTGCCGCTTCCGTCCAATTTCC 556 consensus_6857#2 CGCTGCCCCAACGTCGATGCCACCACCGCAGCCGAACACTGCCGCTTCCGTCCAATTTCC 494 consensus_6857#0 CNCGGACTCA-CGGCCATATCNCAAAGGANATANTACCCCNGGATTTNCACCTAANAGCT 595 * * * * ** ** * ** * * * * ** * ** * * ** * consensus_6857#1 GGCCCTTCCTTCGCAGATGCAGATTCCGATACTACCATCGGCCTCGGCTCCTCCCGCTGG 616 consensus_6857#2 GGCCCTTCCTTCGCAGATGCAGATTCCGATACTACCATCGGC-TCGGCTCCTCCCGCTGG 553 consensus_6857#0 CCAAATGTACTGTGAGATNGACTTACTGGAGGTCGAATTAACGCGTACCCGCCCCGGNCC 655 * * **** * * * * * ** * * * **** consensus_6857#1 TGCTGCCG---GACCG-GCAGCGATGATGAATCC--TCCCAGCTACGACCAAGTGGTAAA 670 consensus_6857#2 TGCTGCCG---GACCG-GCAGCGATGATGAATCC--TCCCAGCTACGACCAAGTGGTAAA 607 consensus_6857#0 TTTTGACGTTTGACCTTATGACGACCAGGGGGCAGATCCTGGGCGCGA--AAGGGACAGT 713 * ** ** **** *** * * * *** * *** *** * * consensus_6857#1 CAACTCGTACCCAG-TGCAGGCACCTTAC-AATCCCGACTTCAAAGG-CTAAACGACGAT 727 consensus_6857#2 CAACTCGTACCCAGGTGCAGGCACCTTAC-AATCCCGACTTCAAAGG-CTAAACGACGAT 665 consensus_6857#0 CAATTCGAA---ATATGAGATTACCCCGCTAATCACCNATCCAATGTTCCTTATAACACA 770 *** *** * * ** *** * **** * * *** * * * ** consensus_6857#1 GGCCGTACGGGCCCCTGGAGAGGAGACTTAAAGTT-CAG--GA-ACAAACGGTGAACCAC 783 consensus_6857#2 TGCCGTACGGGCCCCTGNAGAGGAGACTTAAAGNTTCAG--GAGACCAACGGTGA----- 718 consensus_6857#0 AGCCACAACCGTGTTGGGTGATACACACAAAGGTCACAACTACTACCGGCTGTAACCCCC 830 *** * * * ** ** * ** ** * ** * consensus_6857#1 AGTGAACCACACGCTGGAGGCGGTTTAGGAAAGAAAGCTTTCCTAGTGCCATCCTAGACG 843 consensus_6857#2 ------------------------------------------------------------ consensus_6857#0 AAGAGTCTGGACACCGCAAGTGACGCAACCCCTATACAACACAAAAAGAACNCCGCNGAC 890 consensus_6857#1 AGCAACTAGCGTAATTGTCGCCGTGTTA 871 consensus_6857#2 ---------------------------- consensus_6857#0 AACCTCTACTGACATAA----------- 907 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||