These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6860#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 720 fasta sequence [TGCGGTTGCAGTGTGTGTTGTGGTTCCGTTTCGCAAGCAGCTAGAGGGAAGTGATATGATGTAATAAAGCAACAAAAATCGTGCGTTTCTGGTCCAATTTGTTTGCGTCTGCTGGCCGTAACCATGTCGCTGACATTGTTGCGTACGCTGTGCCGCCACCAGCAGCACGTGCTACAGCAGCGGCAGCCCGTTTCGTTCGTCGGCAGCGGCGCGTTTCGTGGTGCAATCCGCCTGCAGAGCA---CCGCCGGTGGAGACGGTCCGAAACAAGACGGTGACAACGACAAGCAATCCACCAAAGAGCGGCTGGCGGCCAAGTACAGCCGGGAGAATGTGAAGCGCAACGTGCAGGGGTACGTGTTTTCACGGTTTTTCGACTACGTGAAAAACTACGACAAGGTGATCGAGAAGAAGTTCCCGTCGGCGGTACACGTCTACCGGGTGTTTCTGGTCGGCGTGCGCGATTTCTTCAACGACATGAAGAAGCTAGTCAAGATCACGAAAATCGTCTACTCGCACGATAACGATCTGCGCTGCCTGACGCGCAAGGAGATCGAGCTGTACTACCAGATGCCGCGGGACATGAGGAAGGTGGCGCCCGTGCTGCTCATATCGGCGCTGCCGTTCGCGAACTATGTGATATTTCCACTTGCTTACATGTACCCCCGCACGCTGCTGACGTCCCATTTCTGGTCGGCACAGCAGAAGCTAGACTTTTGTGCA] [+] EMBL BX607290 [TGCGGTTGCAGTGTGTGTTGTGGTTCCGTTTCGCAAGCAGCTAGAGGGAAGTGATATGATGTAATAAAGCAACAAAAATCGTGCGTTTCTGGTCCAATTTGTTTGCGTCTGCTGGCCGTAACCATGTCGCTGACATTGTTGCGTACGCTGTGCCTCCACCAGCAGCACGTGCTACAGCAGCGGCAGCCCGTTTCGTTCGTCGGCAGCGGCGCGTTTCGTGGTGCAATCCGCCTGCAGAGCA CCGCCGGTGGAGACGGTCCGAAACAAGACGGTGACAACGACAAGCAATCCACCAAAGAGCGGCTGGCGGCCAAGTACAGCCGGGAGAATGTGAAGCGCAACGTGCAGGGGTACGTGTTTTCACGGTTTTTCGACTACGTGAAAAACTACGACAAGGTGATCGAGAAGAAGTTCCCGTCGGCGGTACACGTCTACCGGGTGTTTCTGGTCGGCGTGCGCGATTTCTTCAACGACATGAAGAAGCTAGTCAAGATCACGAAAATCGTCTACTCGCACGATAACGATCTGCGCTGCCTGACGCGCAAGGAGATCGAGCTGTACTACCAGATGCCGCGGGACATGAGGAAGGTGGCGCCCGTGCTGCTCATATCGGCGCTGCCGTTCGCGAACTATGTGATATTTCCACTTGCTTACATGTACCCCCGTACGCTGCTGACGTCCCATTTCT ] [+] EMBL BM645827 [ ccgGCAGTGTGTGTTGTGGTTCCGTTTCGCAAGCAGCTAGAGGGAAGTGATATGATGTAATAAAGCAACAAAAATCGTGCGTTTCTGGTCCAATTTGTTTGCGTCTGCTGGCCGTAACCATGTCGCTGACATTGTTGCGTACGCTGTGCCGCCACCAGCAGCACGTGCTACAGCAGCGGCAGCCCGTTTCGTTCGTCGGCAGCGGCGCGTTTCGTGGTGCAATCCGCCTGCAGAGCA CCGCCGGTGGAGACGGTCCGAAACAAGACGGTGACAACGACAAGCAATCCACCAAAGAGCGGCTGGCGGCCAAGTACAGCCGGGAGAATGTGAAGCGCAACGTGCAGGGGTACGTGTTTTCACGGTTTTTCGACTACGTGAAAAACTACGACAAGGTGATCGAGAAGAAGTTCCCGTCGGCGGTACACGTCTACCGGGTGTTTCTGGTCGGCGTGCGCGATTTCTTCAACGACATGAAGAAGCTAGTCAAGATCACGAAAATCGTCTACTCGCACGATAACGATCTGCGCTGCCTGACGCGCAAGGAGATCGAGCTGTACTACCAGATGCCGCGGGACATGAGGAAGGTGGCGCCCGT ] [+] EMBL BM622889 [ ccgGTTGTGGTGCCGTTTCGCAAGCAGCTAGAGGGAAGTGATATGATGTAATAAAGCAACAAAAATCGTGCGTTTCTGGTGTAATTTGTTTGCGTCTGCTGGCCGTAACCATGTCGCTGACATTGTTGCGTACGCTGTGCCGCCACCAGCAGCACGTGCTACAGCAGCGTCAGCCCGTTTCGTTCGTCGGCAGCGGCGCGTTTCGTGGTGCAATCCGCCTGCAGAGCACCGCCGCCGGTGGAGACGGTCCGAAACAGGACGGCGACAACGACAAGCAATCGACCAAAGAGCGGCTGGCGGCCAAGTACAGCCGGGAGAATGTGAAGCGCAACGTGCAGGGGTACGTGTTTTCACGGTTTTTCGACTACGTGAAAAACTACGACAAGGTGATCGAGAAAAAGTTCCCGTCGGCGGTACACGTCTACCGGGTGTTTCTGGTCGGCGTGCGCGATTTCTTCAACGACATGAAGAAGCTAGTCAAGATCACGAAAATCGTCTACTCGCACGATAACGATCTGCGCTGCCTGACGCGCAAGGAGATCGAGCTGTACTACCAGATGCCGCGGGACATGAGGAAGGTGGCGCCCGTGCTGCTCATATCGGCGCTGCCGTTCGCGAACTATGTGATATTTCCACTTGCTTACATGTACCCCCGCACGCTGCTG ] [+] EMBL BM610077 [ ccGGTGCCGTTTCGCAAGCAGCTAGAGGGAAGTGATATGATGTAATAAAGCAACAAAAATCGTGCGTTTCTGGTGTAATTTGTTTGCGTCTGCTGGCCGTAACCATGTCGCTGACATTGTTGCGTACGCTGTGCCGCCACCAGCAGCACGTGCTACAGCAGCGTCAGCCCGTTTCGTTCGTCGGCAGCGGCGCGTTTCGTGGTGCAATCCGCCTGCAGAGCACCGCCGCCGGTGGAGACGGTCCGAAACAGGACGGCGACAACGACAAGCAATCGACCAAAGAGCGGCTGGCGGCCAAGTACAGCCGGGAGAATGTGAAGCGCAACGTGCAGGGGTACGTGTTTTCACGGTTTTTCGACTACGTGAAAAACTACGACAAGGTGATCGAGAAAAAGTTCCCGTCGGCGGTACACGTCTACCGGGTGTTTCTGGTCGGCGTGCGCGATTTCTTCAACGACATGAAGAAGCTAGTCAAGATCACGAAAATCGTCTACTCGCACGATAACGATCTGCGCTGCCTGACGCGCAAGGAGATCGAGCTGTACTACCAGATGCCGCGGGACATGAGGAAGGTGGCGCCCGTGCTGCTCATATCGGCGCTGCCGTTCGCGAACTATGTGATATTTCCACTTGCTTACATGTACCCCCGCACGCTGCTGACGTCCCATTTCTGGTCGGCACAGCAGAAGCTAGACTTTTGTGCA] [+] EMBL BM614402 [ ccgGTGATATGATGTAATAAAGCAACAAAAATCGTGCGTTTCTGGTCCAATTTGTTTGCGTCTGCTGGCCGTAACCATGTCGCTGACATTGTTGCGTACGCTGTGCCGCCACCAGCAGCACGTGCTACAGCAGCGGCAGCCCGTTTCGTTCGTCGGCAGCGGCGCGTTTCGTGGTGCAATCCGCCTGCAGAGCA CCGCCGGTGGAGACGGTCCGAAACAAGACGGTGACAACGACAAGCAATCCACCAAAGAGCGGCTGGCGGCCAAGTACAGCCGGGAGAATGTGAAGCGCAACGTGCAGGGGTACGTGTTTTCACGGTTTTTCGACTACGTGAAAAACTACGACAAGGTGATCGAGAAGAAGTTCCCGTCGGCGGTACACGTCTACCGGGTGTTTCTGGTCGGCGTGCGCGATTTCTTCAACGACATGAAGAAGCTAGTCAAGATCACGAAAATCGTCTACTCGCACGATAACGATCTGCGCTGCCTGACGCGCAAGGAGATCGAGCTGTACTACCAGATGCCGCGGGACATGAGGAAGGTGGCGCCCGTGCTGCTCATATCGGCGCTGCCGTTCGCGAACTATGTGATATTTCCACTTGCTTACATGTAC ] consensusID : consensus_6860#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [CCGCGGACGCGTGGGTTCGCAAGCAGCTAGAGGGAAGTGATATGATGTAATAAAGCAACAAAAATCGTGCGTTTCTGGTCCAATTTGTTTGCGTCTGCTGGCCGTAACCATGTCGCTGACATTGTTGCGTACGCTGTGCCGCCACCAGCAGCACGTGCTACAGCAGCGGCAGCCCGTTTCGTTCGTCGGCAGCGGCGCGTTTCGTGGTGCAATCCGCCTGCAGAGCACCGCCGGTGGAGACGGTCCGAAACAAGACGGTGACAACGACAAGCAATCCACCAAAGAGCGGCTGGCGGCCAAGTACAGCCGGGAGAATGTGAAGCGCAACGTGCAGGGGTACGTGTTTTCACGGTTTTTCGACTACGTGAAAAACTACGACAAGGTGATCGAGAAGAAGTTCCCGTCGGCGGTACACGTCTACCGGGTGTTTCTGGTCGGCGTGCGCGATTTCTTCAACGACATGAAGAAGCTAGTCAAGATCACGAAAATCGTCTACTCGCACGATAACGATCTGCGCTGCCTGACGCGCAAGGAGATCGAGCTGTACTACCAGATGCCGCGGGACATGAGGAAGGTGGCGCCCGTGCTGCTCATATCGGCGCTGCCGTTCG] [+] EMBL BM601841 [CCGCGGACGCGTGGGTTCGCAAGCAGCTAGAGGGAAGTGATATGATGTAATAAAGCAACAAAAATCGTGCGTTTCTGGTCCAATTTGTTTGCGTCTGCTGGCCGTAACCATGTCGCTGACATTGTTGCGTACGCTGTGCCGCCACCAGCAGCACGTGCTACAGCAGCGGCAGCCCGTTTCGTTCGTCGGCAGCGGCGCGTTTCGTGGTGCAATCCGCCTGCAGAGCACCGCCGGTGGAGACGGTCCGAAACAAGACGGTGACAACGACAAGCAATCCACCAAAGAGCGGCTGGCGGCCAAGTACAGCCGGGAGAATGTGAAGCGCAACGTGCAGGGGTACGTGTTTTCACGGTTTTTCGACTACGTGAAAAACTACGACAAGGTGATCGAGAAGAAGTTCCCGTCGGCGGTACACGTCTACCGGGTGTTTCTGGTCGGCGTGCGCGATTTCTTCAACGACATGAAGAAGCTAGTCAAGATCACGAAAATCGTCTACTCGCACGATAACGATCTGCGCTGCCTGACGCGCAAGGAGATCGAGCTGTACTACCAGATGCCGCGGGACATGAGGAAGGTGGCGCCCGTGCTGCTCATATCGGCGCTGCCGTTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6860#0 TGCGGTTGCAGTGTGTGTTGTGGTTCCGTTTCGCAAGCAGCTAGAGGGAAGTGATATGAT 60 consensus_6860#1 --------------CCGCGGACGCGTGGGTTCGCAAGCAGCTAGAGGGAAGTGATATGAT 46 * * * * ******************************* consensus_6860#0 GTAATAAAGCAACAAAAATCGTGCGTTTCTGGTCCAATTTGTTTGCGTCTGCTGGCCGTA 120 consensus_6860#1 GTAATAAAGCAACAAAAATCGTGCGTTTCTGGTCCAATTTGTTTGCGTCTGCTGGCCGTA 106 ************************************************************ consensus_6860#0 ACCATGTCGCTGACATTGTTGCGTACGCTGTGCCGCCACCAGCAGCACGTGCTACAGCAG 180 consensus_6860#1 ACCATGTCGCTGACATTGTTGCGTACGCTGTGCCGCCACCAGCAGCACGTGCTACAGCAG 166 ************************************************************ consensus_6860#0 CGGCAGCCCGTTTCGTTCGTCGGCAGCGGCGCGTTTCGTGGTGCAATCCGCCTGCAGAGC 240 consensus_6860#1 CGGCAGCCCGTTTCGTTCGTCGGCAGCGGCGCGTTTCGTGGTGCAATCCGCCTGCAGAGC 226 ************************************************************ consensus_6860#0 ACCGCCGGTGGAGACGGTCCGAAACAAGACGGTGACAACGACAAGCAATCCACCAAAGAG 300 consensus_6860#1 ACCGCCGGTGGAGACGGTCCGAAACAAGACGGTGACAACGACAAGCAATCCACCAAAGAG 286 ************************************************************ consensus_6860#0 CGGCTGGCGGCCAAGTACAGCCGGGAGAATGTGAAGCGCAACGTGCAGGGGTACGTGTTT 360 consensus_6860#1 CGGCTGGCGGCCAAGTACAGCCGGGAGAATGTGAAGCGCAACGTGCAGGGGTACGTGTTT 346 ************************************************************ consensus_6860#0 TCACGGTTTTTCGACTACGTGAAAAACTACGACAAGGTGATCGAGAAGAAGTTCCCGTCG 420 consensus_6860#1 TCACGGTTTTTCGACTACGTGAAAAACTACGACAAGGTGATCGAGAAGAAGTTCCCGTCG 406 ************************************************************ consensus_6860#0 GCGGTACACGTCTACCGGGTGTTTCTGGTCGGCGTGCGCGATTTCTTCAACGACATGAAG 480 consensus_6860#1 GCGGTACACGTCTACCGGGTGTTTCTGGTCGGCGTGCGCGATTTCTTCAACGACATGAAG 466 ************************************************************ consensus_6860#0 AAGCTAGTCAAGATCACGAAAATCGTCTACTCGCACGATAACGATCTGCGCTGCCTGACG 540 consensus_6860#1 AAGCTAGTCAAGATCACGAAAATCGTCTACTCGCACGATAACGATCTGCGCTGCCTGACG 526 ************************************************************ consensus_6860#0 CGCAAGGAGATCGAGCTGTACTACCAGATGCCGCGGGACATGAGGAAGGTGGCGCCCGTG 600 consensus_6860#1 CGCAAGGAGATCGAGCTGTACTACCAGATGCCGCGGGACATGAGGAAGGTGGCGCCCGTG 586 ************************************************************ consensus_6860#0 CTGCTCATATCGGCGCTGCCGTTCGCGAACTATGTGATATTTCCACTTGCTTACATGTAC 660 consensus_6860#1 CTGCTCATATCGGCGCTGCCGTTCG----------------------------------- 611 ************************* consensus_6860#0 CCCCGCACGCTGCTGACGTCCCATTTCTGGTCGGCACAGCAGAAGCTAGACTTTTGTGCA 720 consensus_6860#1 ------------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||