These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6862#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 857 fasta sequence [CAGAAAACGACCTTTTTTGCTTTTCGGTGTCTCTGAAATCAAGAAGCAAACAGCGATCAAAGAGTTTTCACAAAATAACCAAACGAAAAATGCATAAGAGCAAAACACAACTAATTACAATTGCTTGAATCTAATCTGAAAGCGTACGAGCAAATGAAAAAGACGAAACATGTAGCCGAAATATGATTGCAAAACCGTTAAAAACATGTTTGTGCGCTTTTAAAGAGGCGTCTAAGTCTAAAAATCCTAAGTGAAACATAAATAGTACGGAACACGCGCGCGCGCGAATACAATTTAATGATTTGCTTGCGTGCCTAAGAATGGAACGATGTTGTTATAGTTCCATAGAAAAAAAAACACGCAACTGCAACGGGGAAACCGTGATAACACATGATCGGGAAAGTAATAGAAGCAATTCTCTCACACAAAGTAAGTTGCATCTTATTGATTGATCTCAATTGGTTTAGACAAGAAAGGAGGGGGGAGGGAAAGCAAAGGATAACG-AAAACACATTAAGTCTGACTGCATTTCTCGATCGTTCCCTGAGAAAACATGTGATAATTTGTGCAAGGAAAAATGGGAATACTGTTGAATTTAGAATTCTACTCCCGTTCGAAAGACGCCCACAGTAAATTGAGATGATAAAGTCTATACCAAAAGTACCTTCCCCCTCGCTCAAGATTCATTGGTCGGTGGTGACCTGCCTACCCCCAACCGATCACCATTCATCAAAGCATATGCTGCAGCAAACATCAAGTAGCAAACAACAACCATGATCAATTTCACTGATCATGGTTTTATAAAAGAGAAAGCATCGAAATTGTTAAACAGGGAANAGTTCCACGTTGTATTAGCAG] [+] EMBL BX621454 [CAGAAAACGACCTTTTTTGCTTTTCGGTGTCTCTGAAATCAAGAAGCAAACAGCGATCAAAGAGTTTTCACAAAATAACCAAACGAAAAATGCATAAGAGCAAAACACAACTAATTACAATTGCTTGAATCTAATCTGAAAGCGTACGAGCAAATGAAAAAGACGAAACATGTAGCCGAAATATGATTGCAAAACCGTTAAAAACATGTTTGTGCGCTTTTAAAGAGGCGTCTAAGTCTAAAAATCCTAAGTGAAACATAAATAGTACGGAACACGCGCGCGCGCGAATACAATTTAATGATTTGCTTGCGTGCCTAAGAATGGAACGATGTTGTTATAGTTCCATAGAAAAAAAAACACGCAACTGCAACGGGGAAACCGTGATAACACATGATCGGGAAAGTAATAGAAGCAATTCTCTCACACAAAGTAAGTTGCATCTTATTGATTGATCTCAATTGGTTTAGACAAGAAAGGAGGGGGGAGGGAAAGCAAAGGATAACG AAAACACATTAAGTCTGACTGCATTTCTCGATCGTTCCCTGAGAAAACATGTGATAATTTGTGCAAGGAAAAATGGGAATACTGTTGAATTTAGAATTCTACTCCCGTTCGAAAGACGCCCACAGTAAATTGAGATGATAAAGTCTATACCAAAAGTACCTTCCCCCTCGCTCAAGATTCATTGGTCGGTGGTGACCTGCCTACCCCCAACCGATCACCATTCATCAAAGCATATGCTGCAGCAAACATCAAGTAGCAAACAACAACCATGATCAATTTCA ] [+] EMBL BX622984 [ AAATCAAGAAGCAAACAGCGATCAAAGAGTTTTCACAAAATAACCAAACGAAAAATGCATAAGAGCAAAACACAACTAATTACAATTGCTTGAATCTAATCTGAAAGCGTACGAGCAAATGAAAAAGACGAAACATGTAGCCGAAATATGATTGCAAAACCGTTAAAAACATGTTTGTGCGCTTTTAAAGAGGCGTCTAAGTCTAAAAATCCTAAGTGAAACATAAATAGTACGGAACACGCGCGCGCGCGAATACAATTTAATGATTTGCTTGCGTGCCTAAGAATGGAACGATGTTGTTATAGTTCCATAGAAAAAAAAACACGCAACTGCAACGGGGAAACCGTGATAACACATGATCGGGAAAGTAATAGAAGCAATTCTCTCACACAAAGTAAGTTGCATCTTATTGATTGATCTCAATTGGTTTAGACAAGAAAGGAGGGGGGAGGGAAAGCAAAGGATAACG AAAACACATTAAGTCTGACTGCATTTCTCGATCGTTCCCTGAGAAAACATGTGATAATTTGTGCAAGGAAAAATGGGAATACTGTTGAATTTAGAATTCTACTCCCGTTCGAAAGACGCCCACAGTAAATTGAGATGATAAAGTCTATACCAAAAGTACCTTCCCCCTCGCTCAAGATTCATTGGTCGGTGGTGACCTGCCTACCCCCAACCGATCACCATTCATCAAAGCATATGCTGCAGCAAACATCAAGTAGCAAACAACAACCATGATCAATTTCACTGATCATGGTTTTATAAAAGAGAAAGCATCGAAATTGTTAAACAGGGAANAGTTCCACGTTGTATTAGCAG] [+] EMBL BX624003 [ TATGATTGCAAACCCGTTAAAAACATGTTTGTGCGCTTTTAAAGAGGCGTCTAAGTCTAAAAATCCTAAGTGAAACATAAATAGTACGGAACACGCGCGCGCGCGAATACAATTTAATGATTTGCTTGCGTGCCTAAGAATGGAACGATGTTGTTATAGTTCCATAGAAAAAAAAACACGCAACTGCAACGGGGAAAACGTGATAAAACGTGATCGGGAAAGTAATAGAAGCAATTCTCTCACACAAAGTAAGTTGCATCTTATTGATTGATCTCAATTGGTTTAGACAAGAAAGGA GGGGGAGGGAAAGCAAAGGATAACGAAAAACACATTAAGTCTGACTGCATTTCTCGATCGTTCCCTGAGAAAACATGTGATAATTTGTGTAAGAAAAAATGGGAATACTGTTGAATTTAGAATTCTACTCCCGTTCGAAAGATGCCCACAGTAAATTGAGATGATAAAGTCTATACCAAAAGTACCTTCCCCCTCGCTCAAGATTCATTGGTCGGTGGTGACCTGCCTACCCCCAACCGATCACCA ] [+] EMBL BM631447 [ ccgTAAATAGTACGGAACACGCGCGCGCGCGAATACAATTTAATGATTTGCTTGCGTGCCTAAGAATGGAACGATGTTGTTATAGTTCCATAGAAAAAAAAACACGCAACTGCAACGGGGAAACCGTGATAACACATGATCGGGAAAGTAATAGAAGCAATTCTCTCACACAAAGTAAGTTGCATCTTATTGATTGATCTCAATTGGTTTAGACAAGAAAGGAGGGGGGAGGGAAAGCAAAGGATAACG AAAACACATTAAGTCTGACTGCATTTCTCGATCGTTCCCTGAGAAAACATGTGATAATTTGTGCAAGGAAAAATGGGAATACTGTTGAATTTAGAATTCTACTCCCGTTCGAAAGACGCCCACAGTAAATTGAGATGATAAAGTCTATACCAAAAGTACCTTCCCCCTCGCTCAAGATTCATTGGTCGGTGGTGACCTGCCTACCCCCAACCGATCACCATTCATCAAAGCATATGCTGCAGCAAA ] consensusID : consensus_6862#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [CCGCCCACGCGTCCGATTGATCTCAATTGGTTTAGACAAGAAAGGAGGGGGGAGGGAAAGCAAAGGATAACGAAAACACATTAAGTCTGACTGCATTTCTCGATCGTTCCCTGAGAAAACATGTGATAATATGTGCAAGAAAAAATGGGAATACTGTTGAATTTAGAATTCTACTCCCGTTCGAAACACGCCCACAGTAAATTGAGATGATAAAGTCTATACCAAAAGTACCTTCCCCCTCGCTCAAGATTCATTGGTCGGTGGTGACCTACCTACCCCCCAAACGATCACCATTCATCCAAGCAAATGCTGCAGCAAACATCAAGTAGCAAACATCAACCATGATCAATTTCACGATAATGGTTTTATAAAAGCGAAAGCATCGAAATTGTTAAAACAGGGAAGAGTTACAACGTTGTATTAGCAGCAGGGGAAACCTGAATGAAACTCTGCTATACACACACACACACACACACATCAATATTGTAATCAATTTCAGACAAACTCTCTGAGAGAAGAAAAATGCTCTGTGTTTTATAGCGCCCAAGGGTTACAAGATGATGCACCTTTGGCGCAAAAACACACTCTACGCACCAGCGCATGCCCCAGCAGCACACACGGTGTGTCGTGTGTCGGCCAAAGGTGGCGCATGCTGATGCAGTTG] [+] EMBL BM632946 [CCGCCCACGCGTCCGATTGATCTCAATTGGTTTAGACAAGAAAGGAGGGGGGAGGGAAAGCAAAGGATAACGAAAACACATTAAGTCTGACTGCATTTCTCGATCGTTCCCTGAGAAAACATGTGATAATATGTGCAAGAAAAAATGGGAATACTGTTGAATTTAGAATTCTACTCCCGTTCGAAACACGCCCACAGTAAATTGAGATGATAAAGTCTATACCAAAAGTACCTTCCCCCTCGCTCAAGATTCATTGGTCGGTGGTGACCTACCTACCCCCCAAACGATCACCATTCATCCAAGCAAATGCTGCAGCAAACATCAAGTAGCAAACATCAACCATGATCAATTTCACGATAATGGTTTTATAAAAGCGAAAGCATCGAAATTGTTAAAACAGGGAAGAGTTACAACGTTGTATTAGCAGCAGGGGAAACCTGAATGAAACTCTGCTATACACACACACACACACACACATCAATATTGTAATCAATTTCAGACAAACTCTCTGAGAGAAGAAAAATGCTCTGTGTTTTATAGCGCCCAAGGGTTACAAGATGATGCACCTTTGGCGCAAAAACACACTCTACGCACCAGCGCATGCCCCAGCAGCACACACGGTGTGTCGTGTGTCGGCCAAAGGTGGCGCATGCTGATGCAGTTG] consensusID : consensus_6862#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [CCGCGCTGGAACCGACGATACTGATGGGCCGCCCGGCGGCACCGCGGCTGACGGCGGGGGTATTAGTAGTAGTAGCAGTAGTAGTGGTGGTGCGATCGCTTCTGCCAGTATTCCTTCGCCGCTTCCTGCTGCCCGCAGCGGGGCAAAGGACTGTTGTGCCGCCGGTGGCAGCAGCAGCGAGACAACACGTGATAAACCCAGTATGGCCAACGTACTGTTGCCGTCCATCGATAACAGCAGCTGCTGCTAGAGCGTTTGTGCGCGTTGTATGGATCAGATCTTTCCGGGAGTGCACGTGAAGGGTTAAAGGAAGGGAATACGCAGATCAGGCCATGGAAGATTCAGACAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAAGAGAGCGAAAGAGAGACACACACGATGGTTTGTACATAGTAAAAAAATGAATTCAAATGGCAGCAAAGGATGCGCGACGCGACGGGAAACTGCGAGACAAACAATACAACAACAACAACAACACTATTTCGTAAGCGCAAACGAGGAAACGCCAAAGG] [+] EMBL BM603763 [CCGCGCTGGAACCGACGATACTGATGGGCCGCCCGGCGGCACCGCGGCTGACGGCGGGGGTATTAGTAGTAGTAGCAGTAGTAGTGGTGGTGCGATCGCTTCTGCCAGTATTCCTTCGCCGCTTCCTGCTGCCCGCAGCGGGGCAAAGGACTGTTGTGCCGCCGGTGGCAGCAGCAGCGAGACAACACGTGATAAACCCAGTATGGCCAACGTACTGTTGCCGTCCATCGATAACAGCAGCTGCTGCTAGAGCGTTTGTGCGCGTTGTATGGATCAGATCTTTCCGGGAGTGCACGTGAAGGGTTAAAGGAAGGGAATACGCAGATCAGGCCATGGAAGATTCAGACAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAAGAGAGCGAAAGAGAGACACACACGATGGTTTGTACATAGTAAAAAAATGAATTCAAATGGCAGCAAAGGATGCGCGACGCGACGGGAAACTGCGAGACAAACAATACAACAACAACAACAACACTATTTCGTAAGCGCAAACGAGGAAACGCCAAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6862#0 CAGAAAACGACCTTTTTTGCTTTTCGGTGTCTCTGAAATCAAGAAGCAAACAGCGATCAA 60 consensus_6862#1 ------------------------------------------------------------ consensus_6862#2 ------------------------------------------------------------ consensus_6862#0 AGAGTTTTCACAAAATAACCAAACGAAAAATGCATAAGAGCAAAACACAACTAATTACAA 120 consensus_6862#1 ------------------------------------------------------------ consensus_6862#2 ------------------------------------------------------------ consensus_6862#0 TTGCTTGAATCTAATCTGAAAGCGTACGAGCAAATGAAAAAGACGAAACATGTAGCCGAA 180 consensus_6862#1 ------------------------------------------------------------ consensus_6862#2 ------------------------------------------------------------ consensus_6862#0 ATATGATTGCAAAACCGTTAAAAACATGTTTGTGCGCTTTTAAAGAGGCGTCTAAGTCTA 240 consensus_6862#1 ------------------------------------------------------------ consensus_6862#2 ------------------------------------------------------------ consensus_6862#0 AAAATCCTAAGTGAAACATAAATAGTACGGAACACGCGCGCGCGCGAATACAATTTAATG 300 consensus_6862#1 ------------------------------------------------------------ consensus_6862#2 ------------------------------------------------------------ consensus_6862#0 ATTTGCTTGCGTGCCTAAGAATGGAACGATGTTGTTATAGTTCCATAGAAAAAAAAACAC 360 consensus_6862#1 ------------------------------------------------------------ consensus_6862#2 ------------------------------------------------------------ consensus_6862#0 GCAACTGCAACGGGGAAACCGTGATAACACATGATCGGGAAAGTAATAGAAGCAATTCTC 420 consensus_6862#1 ------------------------------------------------------------ consensus_6862#2 ------------------------------------------------------------ consensus_6862#0 TCACACAAAGTAAGTTGCATCTTATTGATTGATCTCAATTGGTTTAGACAAGAAAGGAGG 480 consensus_6862#1 ------------CCGCCCACGCGTCCGATTGATCTCAATTGGTTTAGACAAGAAAGGAGG 48 consensus_6862#2 ----CCGCGCTGGAACCGACGATACTGATGGGCCGC--CCGGCGGCACCGCGGCTGACGG 54 * *** * * * ** * * * ** consensus_6862#0 GGGGAGGGAAAGCAAAGGATAACGAAAACACATTAAGTCTGACTGCATTTCTCGATCGTT 540 consensus_6862#1 GGGGAGGGAAAGCAAAGGATAACGAAAACACATTAAGTCTGACTGCATTTCTCGATCGTT 108 consensus_6862#2 CGGGGGTATTAGTAGTAG-TAGCAGTAGTAGTGGTGGTGCGATCGCTTCTGCCAGTATTC 113 *** * ** * * ** * * * ** ** ** * * * * * consensus_6862#0 CCCTGAGAAAACATGTGATAATTTGTGCAAGGAAAAATGGGAATACTGTTGAATTTAG-A 599 consensus_6862#1 CCCTGAGAAAACATGTGATAATATGTGCAAGAAAAAATGGGAATACTGTTGAATTTAG-A 167 consensus_6862#2 CTTCGCCGCTTCCTGCTGCCCGCAGCGGGGCAAAGGACTGTTGTGCCGCCGGTGGCAGCA 173 * * * ** * * ** * * * * * * ** * consensus_6862#0 ATTCTACTCCCGTTCGAAAGACGCCCACAGTAAATTGAGATGATAAAGTC-TATACCAAA 658 consensus_6862#1 ATTCTACTCCCGTTCGAAACACGCCCACAGTAAATTGAGATGATAAAGTC-TATACCAAA 226 consensus_6862#2 GCAGCGAGACAACACGTGATAAACCCAGTATGG-CCAACGTACTGTTGCCGTCCATCGAT 232 * ** * * **** * * * * * * * * * * consensus_6862#0 AGTACCTTCCCCCTCGCTCAAGATTCATTGGTCGGTGGTGACCTGCCTACCCCC-AACCG 717 consensus_6862#1 AGTACCTTCCCCCTCGCTCAAGATTCATTGGTCGGTGGTGACCTACCTACCCCCCAAACG 286 consensus_6862#2 AACAGCAGCTGCTGCTAGAGCGTTTGTGCGCGTTGTATGGATCAGATCTTTCCGGGAGTG 292 * * * * * * * ** * ** ** * ** * * consensus_6862#0 ATCACCATTCATCAAAGCATATGCTGCAGCAAACATCAAGTAGCAAACAACAACCATGAT 777 consensus_6862#1 ATCACCATTCATCCAAGCAAATGCTGCAGCAAACATCAAGTAGCAAACATCAACCATGAT 346 consensus_6862#2 CACGTGAAGGGTTAAAGGAAGGG--AATACGCAGATCAGGCCATGGAAGATTCAGACAAA 350 * * * *** * * * * **** * * * * consensus_6862#0 CAATTTCACTGATCATGGTTTTATAAAAGAGAAAGCATCGAAATTGTTAAA-CAGGGAAN 836 consensus_6862#1 CAATTTCAC-GATAATGGTTTTATAAAAGCGAAAGCATCGAAATTGTTAAAACAGGGAAG 405 consensus_6862#2 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAAGAG-AGCGAAAGAGAGACA-CACACGAT 408 * * ** * * ** * ** * ***** * * * ** * consensus_6862#0 AGTTCCA-CGTTGTATTAGCAG-------------------------------------- 857 consensus_6862#1 AGTTACAACGTTGTATTAGCAGCAGGGGAAACCTGAATGAAACTCTGCTATACACACACA 465 consensus_6862#2 GGTTTGTACATAGTAA-AAAAATGAATTCAAATGGCAGCAAAGGATGCGCGACGCGACGG 467 *** * * *** * * consensus_6862#0 ------------------------------------------------------------ consensus_6862#1 CACACACACACATCAATATTGTAATCAATTTCAGACAAACTCTCTGAGAGAAGAAAAATG 525 consensus_6862#2 GAAACTGCGAGACAAACAATACAA-CAACAACAACAACACTATTTCGTAAGCGCAAACGA 526 consensus_6862#0 ------------------------------------------------------------ consensus_6862#1 CTCTGTGTTTTATAGCGCCCAAGGGTTACAAGATGATGCACCTTTGGCGCAAAAACACAC 585 consensus_6862#2 GGAAACGCCAAAGG---------------------------------------------- 540 consensus_6862#0 ------------------------------------------------------------ consensus_6862#1 TCTACGCACCAGCGCATGCCCCAGCAGCACACACGGTGTGTCGTGTGTCGGCCAAAGGTG 645 consensus_6862#2 ------------------------------------------------------------ consensus_6862#0 ------------------- consensus_6862#1 GCGCATGCTGATGCAGTTG 664 consensus_6862#2 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||