These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6881#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1681 fasta sequence [CCGGTAATGTAAATAAACACATTAACACACGGCATCGGAACAAGAAAAGATTCTACAGAAATTACAGAATTCTGGTGAAAGTAAACAACTATCCTACATGCTGTTACCCAGCAATGGAAATAATTTGCTTGTGCTGTTTAGCCGAAACAACCCCTACGTACAAAATTACAACAAGATGTGAATTTAGAGCGGAAGAAAGCTGTGAAAATAATCAGCCTGTTAAAACCATGGAGTTGGGCGAACTTTACACACAATTTACACAGCTTCCTGCAACGTTAGAAATACCATCAAGAGCGAACCAATTCATGTGTGACAACATTTGTTCGCGATGTGTTGGAATGCTTAAGGAATTCTACATGTTTCGGATGACAGCACTAAAAACCCGTGAAGAACTGCAGACGAAAGCAAACATTGCCAAAATTATAAGTAATTTAGAGCTTAATATCGACGAAGCAGTTGGAGCAGCTGACTATCCCAAAGAAGAGTATGCACAAACCGTGCCGAAAATCGAGCACTGTGAAAGTTCGTCTAATAATGGCGATGGAATGTTTGGTTGTAGCATTTGCTCGAAAAGATTTAAGCAACGCAAGCTGTTGAAAAGGCACGCCGAGATTCATTCAGCGCAAAAAAACTACCATTGCCAGTACTGCGAAATGTCGTTTGCAGCAAAGGTGTCCTGCTATAATCATGAGCTCAGAGTACACAGGAAGCTGTTAAAACCGAACGAAGAAAAAAAGAATGCTAAAAGGGAAAATTCGCTATCTTCTGTTAGCAAAAGAAAACTCACCAAACTTGACCCGCATAAAAAATCGAAATACCACGAAGAATCAGAACCGCTTATCCAACAACAAAAGTTCCAGTGTGAACTCTGTGGCAACAGATTTACTAGGAAATCTTCCTTGAAAGATCATAAGCTGATACTGCACGCTGGTGTGAAGCAACACTGTTGTCAGATATGTAATCGTACATTCGGCAGGGAAGATTCATTAAACACGCATATGGCATTGCATGTGGGGAAAAAATTTCGCTGCAAACTGTGCAGCAAATCGTTCGCAAAAGGAAACTTTTTGCGAAAACATCTCGAGGAACATGAGATGCCTGATAGCAAACGAAAGTATGCCTGCACAGTTTGCTCCAAAAAGTTCACCACAGTGAGTCATCTGAATGACCACGTGTTAATTCATAGCGACAAAAAGCCACACAAATGTAGCGATTGTGGTAGAAGTTTTCGTCAAAAGCAGCAGCTTAAAGTACATGCTTATCAACACGTAGGCAAACCTTTTCGATGCGCGTATTGTAATTTGGCTTACACATCGCGATCTCGGCTTCAAACGCACGTGAATAAACACCATTCAAATGAAGAAGTACAATCTGGTAATAAAATAGCTACTGCAGTAGACACTGGCAATTTGCTGCAACCTGATTTCGGAGATAAAGCAGTAAACGAGGAAATATTGAATGAAATATGCTATCAAATCAATTCCAATCCCATAATTTTGGAAAACATTGAAGCCGGTGGTGTTAACCTCATCTGCAACGAAAATATTGTTTTTTTGAACGAATAAATTATGCTTAGCAATGTAAGATGATATGGGGTTTGTTGTAAAACAATACAGCCATTTGTCTGTGTTTGCTGGTCCAAAATACGGAGGATAAAACATACAATAAAAACAAAGCAAGT] [+] EMBL BM615473 [CCGGTAATGTAAATAAACACATTAACACACGGCATCGGAACAAGAAAAGATTCTACAGAAATTACAGAATTCTGGTGAAAGTAAACAACTATCCTACATGCTGTTACCCAGCAATGGAAATAATTTGCTTGTGCTGTTTAGCCGAAACAACCCCTACGTACAAAATTACAACAAGATGTGAATTTAGAGCGGAAGAAAGCTGTGAAAATAATCAGCCTGTTAAAACCATGGAGTTGGGCGAACTTTACACACAATTTACACAGCTTCCTGCAACGTTAGAAATACCGTCAAGAGCGAACCAATTAATGTGTGACAACATTTGTTCGCGATGTGTTGGAATGCTTAAGGAATTCTACATGTTTCGGACGACAGCACTAAAAACCCGTGAAGAACTGCAGACGAAAGCAAACATTGCCAAAATTATAAATAATTTGGAGCTTAATATCGACGAAGCAGTTGGAGCAGCTGACTATCCCAAAGAAGAGTATGCACAAACCGTGCCGAAAATCGAGCACTGTGAAAGTTCGTCTAATAATGGCGATGGAATGTTTGGTTGTAGCATTTGCTCGAAAAGATTTAAGCAACGCAAGCTGTTGAAAAGGCACGCCGAGAT ] [+] EMBL CNS09BYT [ aacAACACACGGCATCGAAACCAGCAAAGATTCTACAGAAATTACAGAAATCTCGTGAAAGTAAACAACTATCCTATATCCAGTTACCAAGCAATGGAAATAATTTGCTTGTGCTGTTTAGCCGAAACAACCCCTACGTACAAAATTACAACAAGATGTGAATTTAGAGCGGAAGAAAGCTGTGAAAATAATCAGCCTGTTAAAACCATGGAGTTGGGCGAACTTTACACACAATTTACGCAGCTTCCTGCAAAGTTAGAAATACCATCAAGAGCGAACCAATTCATGTGTGGCAACATTTGTTCACGATGTGTTGGAATGCTTAAGGAATTCTACATGTTTCGGATGACAGCACTAAAAACCCGTGAAGAACTGCAGACGAAAGCAAACATTGCCAAAATTATAAGTAATTTAGAGCTTAATATCGACGAAGCAGTTGGAGCAGCTGACTATCCCAAAGAAGAATATGCACAAACCGTGCCGAAAATCGAGCACTGTGAAAGTCCGTCTAATAATGGCGATGGAATGTTTGGTTGTAGCAGTTGCTCGAAAAGATTTAAGCAACGCAAGCTGTTGAAAAGGCACGCCGAGATTCATTCAGCGCAAAAAAACTACCATTGCCAGTACTGCGAAATGTCGTTTGCAGCAAAGGTGTCCTGCTATAATCATGAGCTCAGAGTACACAGGAAGCTGTTAAAACCGAACGAAGAAAAAAAGAATGCTAAAAGGGAAAATTCGCTATCTTCTGTTAGCAAAAGAAAACTCACCAAACTTGACCCGCATAAAAAATCGAAATACCACGAAGAATCAGAACCGCTTATCCAACAACAAAAGTTCCAGTGTGAACTCTGTGGCAACAGATTTACTAGGAAATCTTCCTTGAAAGATCATAAGCTGATACTGCACGCTGGTGTGAAGCAACACTGTTGTCAGATATGTAATCGTACATTCGGCAGGGAAGATTCATTAAACACGCATATGGCATTG ] [+] EMBL BM655195 [ ccgGCCGAAACAACCCCTACGTACAAAATTACAACAAGATGTGAATTTAGAGCGGAAGAAAGCTGTGAAAATAATCAGCCTGTTAAAACCATGGAGTTGGGCGAACTTTACACACAATTTACACAGCTTCCAGCAACGTTAGAAATACCATCAAGAGCGAACCAATTCATGTGTGACAACATTTGTTCGCGATGTGTTGGAATGCTTAAGGAATTCTACATGTTTCGGATGACAGCACTAAAAACCCGTGAAGAACTGCAGACGAAAGCAAACATTGCCAAAATTATAAGTAATTTAGAGCTTAATATCGACGAAGCAGTTGGAGCAGCTGACTATCCCAAAGAAGATTATGCACAAACCGTGCCGAAAATCGAGCACTGTGAAAGTTCGTCTAATAATGGCGATGGAATGTTTGGTTGTAGCATTTGCTCGAAAAGATTTAAGCAACGCAAGCTGTTGAAAAGGCACGCCGAGATTCATTCAGCGCAAAAAAACTACCATTGCCAGTACTGCGATATGTCGTTTGCAGCAAAGGTGTCCTGCTATAATCATGAGCTCAGAGTACACAGGAAGCTGTTAAAACCGAACGAAGAAAAAAAGAATGCTAAAAGGGAAAATTCGCTATCTTCTGTTAGCAAAAGAAAACTCACCAAACTTGACCCGC ] [-] EMBL CNS09BYU [ AACCGAACGAAGAAAAAAAGAATGCTAAAAGGGAAAATTCGCTATCTTCTGTTAGCAAAAGAAAACTCACCAAACTTGACCCGCATAAAAAATCGAAATACCACGAAGAATCAGAACCGCTTATCCAACAACAAAAGTTCCAGTGTGAACTCTGTGGCAACAGATTTACTAGGAAATCTTCCTTGAAAGATCATAAGCTGATACTGCACGCTGGTGTGAAGCAACACTGTTGTCAGATATGTAATCGTACATTCGGCAGGGAAGATTCATTAAACACGCATATGGCATTGCATGTGGGGAAAAAATTTCGCTGCAAACTGTGCAGCAAATCGTTCGCAAAAGGAAACTTTTTGCGAAAACATCTCGAGGAACATGAGATGCCTGATAGCAAACGAAAGTATGCCTGCACAGTTTGCTCCAAAAAGTTCACCACAGTGAGTCATCTGAATGACCACGTGTTAATTCATAGCGACAAAAAGCCACACAAATGTAGCGATTGTGGTAGAAGTTTTCGTCAAAAGCAGCAGCTTAAAGTACATGCTTATCAACACGTAGGCAAACCTTTTCGATGCGCGTATTGTAATTTGGCTTACACATCGCGATCTCGGCTTCAAACGCACGTGAATAAACACCATTCAAATGAAGAAGTACAATCTGGTAATAAAATAGCTACTGCAGTAGACACTGGCAATTTGCTGCAACCTGATTTCGGAGATAAAGCAGTAAACGAGGAAATATTGAATGAAATATGCTATCAAATCAATTCCAATCCCATAATTTTGGAAAACATTGAAGCCGGTGGTGTTAACCTCATCTGCAACGAAAATATTGTTTTTTTGAACGAATAAATTATGCTTAGCAATGTAAGATGATATGGGGTTTGTTGTAAAACAATACAGCCATTTGTCTGTGTTTGCTGGTCCAAAATACGGAGGATAAAACATACAATAAAAACAAAGCAAGT] [+] EMBL BM586098 [ ccgAGATTTACTAGGAAATCTTCCTTGAAAGATCATAAGCTGATACTGCACGCTGGTGTGAAGCAACACTGTTGTAAGATATGTAATCGTACATTCGGCAGGGAAGATTCATTAAACACGCATATGGCATTGCATGTAGGGAAAAAATTTCGCTGCAAACTGTGCAGCAAATCGTTCGCAAAAGGCAACTTTTTGCGAAAACATCTCGAGGAACATGAGATGCCTGATAGCAAACGAAAGTATGCCTGCACAGTTTGCTCCAAAAAGTTCACCACAGTGAGTCATCTGAATGACCACGTGCTAATTCATAGCGACAAAAAGCCACACAAATGTAGCGATTGTGGTAGAAGTTTTCGTCAAAAGCAGCAGCTTAAAGTACATGCTTATCAACACGTAGGCAAACCTTTTCGATGCGCGTATTGTAATTTGGCTTACACATCGCGATCTCGGCTTCAAACGCACGTGAATAAACACCATTCAAATGAAGAAGTACAATCTGGTAATAAAATAGCTACTGCAGTAGACACTGGCAATTTGCTGCAACCTGATTTCGGAGATAAAGCAGTAAACGAGGAAATATTGAATGAAATATGCTATCAAATCAATTCCAATCCCATAATTTTGGAAAACAT ] consensusID : consensus_6881#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 631 fasta sequence [CCGGAAGAATATCCACAAACCGTGCCGAAAATCGAGCACTGTGAAAGTTCGTCTAATAATGGCGATGGAATGTTTGGTTGTAGCATTTGCTCGAAAAGATTTAAGCAACGCAAGCTGTTGAAAAGGCACGCCGAGATTCATTCAGCGCAAAAAAACTACCATTGCCAGTACTGCGAAATGTCGTTTGCAGCAAAGGTGTCCTGCTATAATCATGAGCTCAGAGTACACAGGAAACTGTTAAAACCGAACGAAGAAAAAAAGAATGCTAAAAGGGAAAAATCGCTATCTTCTGTTAGCAAAAGAAAACTCACCAAACTTGAACCGCTTATCCAACAACAAAAGTTCCAGTGTGAACTCTGTGGCAACAGATTTACTAGGAAATCTTCCTTGAAAGATCATAAGCTGATACTGCACGCTGGTGTGAAGCAACACTGTTGTAAGATATGTAATCGTACATTCGGCAGGGAAGATTCATTAAACACGCATATGGCATTGCATGTAGGGAAAAAATTTCGCTGCAAACTGTGCAGCAAATCGTTCGCAAAAGGCAACTTTTTGCGAAAACATCTCGAGGAACATGAGATGCCTGATAGCAAACGAAAGTATGCCTGCACAGTTTGCTCCAAAAAGT] [+] EMBL BM624890 [CCGGAAGAATATCCACAAACCGTGCCGAAAATCGAGCACTGTGAAAGTTCGTCTAATAATGGCGATGGAATGTTTGGTTGTAGCATTTGCTCGAAAAGATTTAAGCAACGCAAGCTGTTGAAAAGGCACGCCGAGATTCATTCAGCGCAAAAAAACTACCATTGCCAGTACTGCGAAATGTCGTTTGCAGCAAAGGTGTCCTGCTATAATCATGAGCTCAGAGTACACAGGAAACTGTTAAAACCGAACGAAGAAAAAAAGAATGCTAAAAGGGAAAAATCGCTATCTTCTGTTAGCAAAAGAAAACTCACCAAACTTGAACCGCTTATCCAACAACAAAAGTTCCAGTGTGAACTCTGTGGCAACAGATTTACTAGGAAATCTTCCTTGAAAGATCATAAGCTGATACTGCACGCTGGTGTGAAGCAACACTGTTGTAAGATATGTAATCGTACATTCGGCAGGGAAGATTCATTAAACACGCATATGGCATTGCATGTAGGGAAAAAATTTCGCTGCAAACTGTGCAGCAAATCGTTCGCAAAAGGCAACTTTTTGCGAAAACATCTCGAGGAACATGAGATGCCTGATAGCAAACGAAAGTATGCCTGCACAGTTTGCTCCAAAAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6881#0 CCGGTAATGTAAATAAACACATTAACACACGGCATCGGAACAAGAAAAGATTCTACAGAA 60 consensus_6881#1 ------------------------------------------------------------ consensus_6881#0 ATTACAGAATTCTGGTGAAAGTAAACAACTATCCTACATGCTGTTACCCAGCAATGGAAA 120 consensus_6881#1 ------------------------------------------------------------ consensus_6881#0 TAATTTGCTTGTGCTGTTTAGCCGAAACAACCCCTACGTACAAAATTACAACAAGATGTG 180 consensus_6881#1 ------------------------------------------------------------ consensus_6881#0 AATTTAGAGCGGAAGAAAGCTGTGAAAATAATCAGCCTGTTAAAACCATGGAGTTGGGCG 240 consensus_6881#1 ------------------------------------------------------------ consensus_6881#0 AACTTTACACACAATTTACACAGCTTCCTGCAACGTTAGAAATACCATCAAGAGCGAACC 300 consensus_6881#1 ------------------------------------------------------------ consensus_6881#0 AATTCATGTGTGACAACATTTGTTCGCGATGTGTTGGAATGCTTAAGGAATTCTACATGT 360 consensus_6881#1 ------------------------------------------------------------ consensus_6881#0 TTCGGATGACAGCACTAAAAACCCGTGAAGAACTGCAGACGAAAGCAAACATTGCCAAAA 420 consensus_6881#1 ------------------------------------------------------------ consensus_6881#0 TTATAAGTAATTTAGAGCTTAATATCGACGAAGCAGTTGGAGCAGCTGACTATCCCAAAG 480 consensus_6881#1 --------------------------------------------------------CCGG 4 * consensus_6881#0 AAGAGTATGCACAAACCGTGCCGAAAATCGAGCACTGTGAAAGTTCGTCTAATAATGGCG 540 consensus_6881#1 AAGAATATCCACAAACCGTGCCGAAAATCGAGCACTGTGAAAGTTCGTCTAATAATGGCG 64 **** *** *************************************************** consensus_6881#0 ATGGAATGTTTGGTTGTAGCATTTGCTCGAAAAGATTTAAGCAACGCAAGCTGTTGAAAA 600 consensus_6881#1 ATGGAATGTTTGGTTGTAGCATTTGCTCGAAAAGATTTAAGCAACGCAAGCTGTTGAAAA 124 ************************************************************ consensus_6881#0 GGCACGCCGAGATTCATTCAGCGCAAAAAAACTACCATTGCCAGTACTGCGAAATGTCGT 660 consensus_6881#1 GGCACGCCGAGATTCATTCAGCGCAAAAAAACTACCATTGCCAGTACTGCGAAATGTCGT 184 ************************************************************ consensus_6881#0 TTGCAGCAAAGGTGTCCTGCTATAATCATGAGCTCAGAGTACACAGGAAGCTGTTAAAAC 720 consensus_6881#1 TTGCAGCAAAGGTGTCCTGCTATAATCATGAGCTCAGAGTACACAGGAAACTGTTAAAAC 244 ************************************************* ********** consensus_6881#0 CGAACGAAGAAAAAAAGAATGCTAAAAGGGAAAATTCGCTATCTTCTGTTAGCAAAAGAA 780 consensus_6881#1 CGAACGAAGAAAAAAAGAATGCTAAAAGGGAAAAATCGCTATCTTCTGTTAGCAAAAGAA 304 ********************************** ************************* consensus_6881#0 AACTCACCAAACTTGACCCGCATAAAAAATCGAAATACCACGAAGAATCAGAACCGCTTA 840 consensus_6881#1 AACTCACCAAACTTGA------------------------------------ACCGCTTA 328 **************** ******** consensus_6881#0 TCCAACAACAAAAGTTCCAGTGTGAACTCTGTGGCAACAGATTTACTAGGAAATCTTCCT 900 consensus_6881#1 TCCAACAACAAAAGTTCCAGTGTGAACTCTGTGGCAACAGATTTACTAGGAAATCTTCCT 388 ************************************************************ consensus_6881#0 TGAAAGATCATAAGCTGATACTGCACGCTGGTGTGAAGCAACACTGTTGTCAGATATGTA 960 consensus_6881#1 TGAAAGATCATAAGCTGATACTGCACGCTGGTGTGAAGCAACACTGTTGTAAGATATGTA 448 ************************************************** ********* consensus_6881#0 ATCGTACATTCGGCAGGGAAGATTCATTAAACACGCATATGGCATTGCATGTGGGGAAAA 1020 consensus_6881#1 ATCGTACATTCGGCAGGGAAGATTCATTAAACACGCATATGGCATTGCATGTAGGGAAAA 508 **************************************************** ******* consensus_6881#0 AATTTCGCTGCAAACTGTGCAGCAAATCGTTCGCAAAAGGAAACTTTTTGCGAAAACATC 1080 consensus_6881#1 AATTTCGCTGCAAACTGTGCAGCAAATCGTTCGCAAAAGGCAACTTTTTGCGAAAACATC 568 **************************************** ******************* consensus_6881#0 TCGAGGAACATGAGATGCCTGATAGCAAACGAAAGTATGCCTGCACAGTTTGCTCCAAAA 1140 consensus_6881#1 TCGAGGAACATGAGATGCCTGATAGCAAACGAAAGTATGCCTGCACAGTTTGCTCCAAAA 628 ************************************************************ consensus_6881#0 AGTTCACCACAGTGAGTCATCTGAATGACCACGTGTTAATTCATAGCGACAAAAAGCCAC 1200 consensus_6881#1 AGT--------------------------------------------------------- 631 *** consensus_6881#0 ACAAATGTAGCGATTGTGGTAGAAGTTTTCGTCAAAAGCAGCAGCTTAAAGTACATGCTT 1260 consensus_6881#1 ------------------------------------------------------------ consensus_6881#0 ATCAACACGTAGGCAAACCTTTTCGATGCGCGTATTGTAATTTGGCTTACACATCGCGAT 1320 consensus_6881#1 ------------------------------------------------------------ consensus_6881#0 CTCGGCTTCAAACGCACGTGAATAAACACCATTCAAATGAAGAAGTACAATCTGGTAATA 1380 consensus_6881#1 ------------------------------------------------------------ consensus_6881#0 AAATAGCTACTGCAGTAGACACTGGCAATTTGCTGCAACCTGATTTCGGAGATAAAGCAG 1440 consensus_6881#1 ------------------------------------------------------------ consensus_6881#0 TAAACGAGGAAATATTGAATGAAATATGCTATCAAATCAATTCCAATCCCATAATTTTGG 1500 consensus_6881#1 ------------------------------------------------------------ consensus_6881#0 AAAACATTGAAGCCGGTGGTGTTAACCTCATCTGCAACGAAAATATTGTTTTTTTGAACG 1560 consensus_6881#1 ------------------------------------------------------------ consensus_6881#0 AATAAATTATGCTTAGCAATGTAAGATGATATGGGGTTTGTTGTAAAACAATACAGCCAT 1620 consensus_6881#1 ------------------------------------------------------------ consensus_6881#0 TTGTCTGTGTTTGCTGGTCCAAAATACGGAGGATAAAACATACAATAAAAACAAAGCAAG 1680 consensus_6881#1 ------------------------------------------------------------ consensus_6881#0 T 1681 consensus_6881#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||