These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6884#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1119 fasta sequence [CCGGCACCGGCACCGGATGTCAACCCGCCGGCTACAACAGCCTCTTCGCCTCGCTGCTGCGTACCACCACGCTGTGAGCTGTAAAGAGAAGCTGAAACAAACAAACGCAAAACAACCACCACCAACCTACTACTACTGACTGTTAGTTAGATCAATTATAGTTGTACACACACACACAGACACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCAACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCAAAGCGCGCAACGACGCAGCAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTGTTACGCACCAGGATAAGAAAATGCGCGTAGCAGCGCAGAAGAGGGACGCACAGGAGGAAGCGGAAATTGCTGCTGGAAAACAAAACGCCCGGAAAACATAAAACATAAAATTGCCTTCATCCTCAGAGGCGCCCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGAGACACTCACCCCTAGAAAGGCAACTACAGGCCACAACTATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAATTTAAGCATAGAAAAAGTGAAGCAGAAGAAACATGTGAACAAACTGATAGTATTCGCTGATAAAATATCGTCGTAAATTGTTACATGTAGTAAGGGGGTGGGGGACAGTGAGATAGAAGGAAGACATTGACATTGGATCTTACTACTACCACCGTTGTGTCTGGAAGAAGAGGGGTAAAGGTGGCGCCACACTTACTGTGCGTGCTGCGCTATTTTATTCGCGCGACTGTGTGTAGGCAAGCGTGTTCCGCGGGGTGTATTGTGACCCTCCCCCTCGGCCGAAAAGACCGTGACTGATTTTACTAGCCGACACTAGAGAGACACACACACAGACATACACACAAAACGGAGAATAAGGGAAGCGAAACAAACGCGCCTGTGTGTGTGCAGTACTGTTTAAGCAAATCTTCTATAACCCGACTCCCCTTTCTCAGCATTTTATATATCACGTGCCCGTTTTTTCTCGCGCATGGTCTTTAGTAATTATTGCACTGCGATAAAGCATAGAAGAAGCAAGAGAAGAAAAAATACCCAAAAAAAA] [+] EMBL BM651450 [CCGGCACCGGCACCGGATGTCAACCCGCCGGCTACAACAGCCTCTTCGCCTCGCTGCTGCGTACCACCACGCTGTGAGCTGTAAAGAGAAGCTGAAACAAACAAACGCAAAACAACCACCACCAACCTACTACTACTGACTGTTAGTTAGATCGATTATAGTTGTACACACACACACAGACACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCAACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCAAAGCGCGCAACGACGCAGCAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTGTTACGCACCATGATAAGAAAATGCGCGTAACAGCGCACAAGAGGGACGCACAGGAGGAAGCGGAAATTGCTGCTGGAAAACAAAACGCCCGGAAAACATAAAACATAAAATTGCCTTCATCCTCAGAGGCGCCCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGAGACACTCACCCCTAGAAAGGCAACTACAGGCCACAACTATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAA ] [+] EMBL BM612279 [ ccGCACCGGATGTCAACCCGCCGGCTACAACAGCCTCTTCGCCTCGCTGCTGCGTACCACCACGCTGTGAGCTGTAAAGAGAAGCTGAAACAAACAAACGCAAAACAACCACCACCAACCTACTACTACTGACTGTTAGTTAAATCAATTATAGTTGTACACACACACACAGACACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCAACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCAAAGCGCGCAACGACGCAGCAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTGTTACGCACCAGGATAAGAAAATGCGCGTAGCAGCGCAGAAGAGGGACGCACAGGAGGAAGCGGAAATTGCTGCTGGAAAACAAAACGCCCGGAAAACATAAAACATAAAATTGCCTTCATCCTCAGAGGCGCCCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGAGACACTCACCCCTAGAAAGGCAACTACAGGCCACAACTATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAATTTAAGCATAGAAAAAGTGAAGCAGAAGAAACATGTGAACAAACTGATAGTATTCGCTGATAAAATATCGTCGTAAATTGTTACATGTAGTAAGGGGGTGGGGG ] [+] EMBL BX628301 [ TCAATTATAGTTGTACACACACACACAGACACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCAACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCAAAGCGCGCAACGACGCAGCAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTGTTACGCACCAGGATAAGAAAATGCGCGTAGCAGCGCAGAAGAGGGACGCACAGGAGGAAGCGGAAATTGCTGCTGGAAAACAAAACGCCCGGAAAACATAAAACATAAAATTGCCTTCATCCTCAGAGGCGCCCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGAGACACTCACCCCTAGAAAGGCAACTACAGGCCACAACTATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAATTTAAGCATAGAAAAAGTGAAGCAGAAGAAACATGTGAACAAACTGATAGTATTCGCTGATAAAATATCGTCGTAAATTGTTACATGTAGT AGGGGGTGGGGTACAGTGAGATAGAAGGAAGACATTGACATTGGATCTTACTACTACCACCGTTGTGTCTGGAAGAAGAGGGGTAAAGGTGGCGCCACACTTACTGTGCGTGCTGCGCTATTTTATTCGCGCGACTGTGTGTAGGCAAGCGTGTTCCGCGGGGTGTATTGTGACCCTCCCCCTCGGCCGAAAAGACCGTGACTGATTTTACTAGCCG ] [+] EMBL AGA285557 [ ATAACCTAACCTACCTACCAACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCAAAGCGCGCAACGACGCAGCAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTGTTACGCACCAGGATAAGAAAATGCGCGTAGCAGCGCAGAAGAGGGACGCACAGGAGGAAGCGGAAATTGCTGCTGGTAAACAAAACGCCCGGAAAACATAAAACATAAAATTGCCTTCATCCTCAGAGGCGCCCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGAGACAC ] [-] EMBL AGA284257 [ GGGGTAAAGGTGGCGCCACACTTACTGTGCGTGCTGCGCTATTTTATTCGCGCGACTGTGTGTAGGCAAGCGTGTTCCGCGGGGTGTATTGTGACCCTCCCCCTCGGCCGAAAAGACCGTGACTGATTTTACTAGCCGACACTAGAGAGACACACACACAGACATACACACAAAACGGAGAATAAGGGAAGCGAAACAAACGCGCCTGTGTGTGTGCAGTACTGTTTAAGCAAATCTTCTATAACCCGACTCCCCTTTCTCAGCATTTTATATATCACGTGCCCGTTTTTTCTCGCGCATGGTCTTTAGTAATTATTGCACTGCGATAAAGCATAGAAGAAGCAAGAGAAGAAAAAATACCCAAAAAAAA] consensusID : consensus_6884#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [CCGAGCACCGGCACCGGCTGTCAACCCGCCGGCTACAACAGCCTCTTCGCCTCGCTGCTGCGTACCACCACGCTGTGAGCTGTAAAGAGAAGCTGAAACAAACAAACGCAAAACAACCACCACCAACCTACTACTACTGACTGTTAGTTAAATCAATTATAGTTGTACACACATACAGCCACACACACAGAGAGACACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCAACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCATAGCGCGCAACGACGCAGAAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTATTACGCACCAGGATAAGAAAATGCGCGTAGCAGCGCAGAAGAGGGACGCATAGGAGGAAGTGGAAATTGCTGCTGGAAAACAAAACGCCCGGAAAACAAAAAAAAACATAAAATTGCCTTCATCCTCAGAGGCGCCCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGACACACACACCCTTAGAAAGGCAACTACAGGCCACAACTATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAATTTAAGCATAGAAAAAGTGAAACAGAAGAAACATGTGAACA] [+] EMBL BM581065 [CCGAGCACCGGCACCGGCTGTCAACCCGCCGGCTACAACAGCCTCTTCGCCTCGCTGCTGCGTACCACCACGCTGTGAGCTGTAAAGAGAAGCTGAAACAAACAAACGCAAAACAACCACCACCAACCTACTACTACTGACTGTTAGTTAAATCAATTATAGTTGTACACACATACAGCCACACACACAGAGAGACACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCAACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCATAGCGCGCAACGACGCAGAAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTATTACGCACCAGGATAAGAAAATGCGCGTAGCAGCGCAGAAGAGGGACGCATAGGAGGAAGTGGAAATTGCTGCTGGAAAACAAAACGCCCGGAAAACAAAAAAAAACATAAAATTGCCTTCATCCTCAGAGGCGCCCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGACACACACACCCTTAGAAAGGCAACTACAGGCCACAACTATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAATTTAAGCATAGAAAAAGTGAAACAGAAGAAACATGTGAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6884#0 -CCGGCACCGGCACCGGATGTCAACCCGCCGGCTACAACAGCCTCTTCGCCTCGCTGCTG 59 consensus_6884#1 CCGAGCACCGGCACCGGCTGTCAACCCGCCGGCTACAACAGCCTCTTCGCCTCGCTGCTG 60 * ************* ****************************************** consensus_6884#0 CGTACCACCACGCTGTGAGCTGTAAAGAGAAGCTGAAACAAACAAACGCAAAACAACCAC 119 consensus_6884#1 CGTACCACCACGCTGTGAGCTGTAAAGAGAAGCTGAAACAAACAAACGCAAAACAACCAC 120 ************************************************************ consensus_6884#0 CACCAACCTACTACTACTGACTGTTAGTTAGATCAATTATAGTTGTACACACACACAC-- 177 consensus_6884#1 CACCAACCTACTACTACTGACTGTTAGTTAAATCAATTATAGTTGTACACACATACAGCC 180 ****************************** ********************** *** consensus_6884#0 ------------AGACACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCA 225 consensus_6884#1 ACACACACAGAGAGACACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCA 240 ************************************************ consensus_6884#0 ACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCAAAGCGCGCAACGACGCAG 285 consensus_6884#1 ACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCATAGCGCGCAACGACGCAG 300 ****************************************** ***************** consensus_6884#0 CAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTGTTACGCACCAGGATA 345 consensus_6884#1 AAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTATTACGCACCAGGATA 360 ******************************************* *************** consensus_6884#0 AGAAAATGCGCGTAGCAGCGCAGAAGAGGGACGCACAGGAGGAAGCGGAAATTGCTGCTG 405 consensus_6884#1 AGAAAATGCGCGTAGCAGCGCAGAAGAGGGACGCATAGGAGGAAGTGGAAATTGCTGCTG 420 *********************************** ********* ************** consensus_6884#0 GAAAACAAAACGCCCGGAAAACATAAAA---CATAAAATTGCCTTCATCCTCAGAGGCGC 462 consensus_6884#1 GAAAACAAAACGCCCGGAAAACAAAAAAAAACATAAAATTGCCTTCATCCTCAGAGGCGC 480 *********************** **** ***************************** consensus_6884#0 CCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGAGACACTCACCCCTAGAAAGG 522 consensus_6884#1 CCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGACACACACACCCTTAGAAAGG 540 **************************************** **** ***** ******** consensus_6884#0 CAACTACAGGCCACAACTATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAATTTA 582 consensus_6884#1 CAACTACAGGCCACAACTATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAATTTA 600 ************************************************************ consensus_6884#0 AGCATAGAAAAAGTGAAGCAGAAGAAACATGTGAACAAACTGATAGTATTCGCTGATAAA 642 consensus_6884#1 AGCATAGAAAAAGTGAAACAGAAGAAACATGTGAACA----------------------- 637 ***************** ******************* consensus_6884#0 ATATCGTCGTAAATTGTTACATGTAGTAAGGGGGTGGGGGACAGTGAGATAGAAGGAAGA 702 consensus_6884#1 ------------------------------------------------------------ consensus_6884#0 CATTGACATTGGATCTTACTACTACCACCGTTGTGTCTGGAAGAAGAGGGGTAAAGGTGG 762 consensus_6884#1 ------------------------------------------------------------ consensus_6884#0 CGCCACACTTACTGTGCGTGCTGCGCTATTTTATTCGCGCGACTGTGTGTAGGCAAGCGT 822 consensus_6884#1 ------------------------------------------------------------ consensus_6884#0 GTTCCGCGGGGTGTATTGTGACCCTCCCCCTCGGCCGAAAAGACCGTGACTGATTTTACT 882 consensus_6884#1 ------------------------------------------------------------ consensus_6884#0 AGCCGACACTAGAGAGACACACACACAGACATACACACAAAACGGAGAATAAGGGAAGCG 942 consensus_6884#1 ------------------------------------------------------------ consensus_6884#0 AAACAAACGCGCCTGTGTGTGTGCAGTACTGTTTAAGCAAATCTTCTATAACCCGACTCC 1002 consensus_6884#1 ------------------------------------------------------------ consensus_6884#0 CCTTTCTCAGCATTTTATATATCACGTGCCCGTTTTTTCTCGCGCATGGTCTTTAGTAAT 1062 consensus_6884#1 ------------------------------------------------------------ consensus_6884#0 TATTGCACTGCGATAAAGCATAGAAGAAGCAAGAGAAGAAAAAATACCCAAAAAAAA 1119 consensus_6884#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||