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Anopheles gambiae
cluster # 6884 cluster # 6884       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6884#0 length = 1119 sequences # 5  
consensus_6884#1 length = 637 sequences # 1  

consensusID : consensus_6884#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1119
fasta sequence
                              [CCGGCACCGGCACCGGATGTCAACCCGCCGGCTACAACAGCCTCTTCGCCTCGCTGCTGCGTACCACCACGCTGTGAGCTGTAAAGAGAAGCTGAAACAAACAAACGCAAAACAACCACCACCAACCTACTACTACTGACTGTTAGTTAGATCAATTATAGTTGTACACACACACACAGACACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCAACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCAAAGCGCGCAACGACGCAGCAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTGTTACGCACCAGGATAAGAAAATGCGCGTAGCAGCGCAGAAGAGGGACGCACAGGAGGAAGCGGAAATTGCTGCTGGAAAACAAAACGCCCGGAAAACATAAAACATAAAATTGCCTTCATCCTCAGAGGCGCCCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGAGACACTCACCCCTAGAAAGGCAACTACAGGCCACAACTATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAATTTAAGCATAGAAAAAGTGAAGCAGAAGAAACATGTGAACAAACTGATAGTATTCGCTGATAAAATATCGTCGTAAATTGTTACATGTAGTAAGGGGGTGGGGGACAGTGAGATAGAAGGAAGACATTGACATTGGATCTTACTACTACCACCGTTGTGTCTGGAAGAAGAGGGGTAAAGGTGGCGCCACACTTACTGTGCGTGCTGCGCTATTTTATTCGCGCGACTGTGTGTAGGCAAGCGTGTTCCGCGGGGTGTATTGTGACCCTCCCCCTCGGCCGAAAAGACCGTGACTGATTTTACTAGCCGACACTAGAGAGACACACACACAGACATACACACAAAACGGAGAATAAGGGAAGCGAAACAAACGCGCCTGTGTGTGTGCAGTACTGTTTAAGCAAATCTTCTATAACCCGACTCCCCTTTCTCAGCATTTTATATATCACGTGCCCGTTTTTTCTCGCGCATGGTCTTTAGTAATTATTGCACTGCGATAAAGCATAGAAGAAGCAAGAGAAGAAAAAATACCCAAAAAAAA]

[+] EMBL BM651450             [CCGGCACCGGCACCGGATGTCAACCCGCCGGCTACAACAGCCTCTTCGCCTCGCTGCTGCGTACCACCACGCTGTGAGCTGTAAAGAGAAGCTGAAACAAACAAACGCAAAACAACCACCACCAACCTACTACTACTGACTGTTAGTTAGATCGATTATAGTTGTACACACACACACAGACACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCAACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCAAAGCGCGCAACGACGCAGCAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTGTTACGCACCATGATAAGAAAATGCGCGTAACAGCGCACAAGAGGGACGCACAGGAGGAAGCGGAAATTGCTGCTGGAAAACAAAACGCCCGGAAAACATAAAACATAAAATTGCCTTCATCCTCAGAGGCGCCCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGAGACACTCACCCCTAGAAAGGCAACTACAGGCCACAACTATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BM612279             [       ccGCACCGGATGTCAACCCGCCGGCTACAACAGCCTCTTCGCCTCGCTGCTGCGTACCACCACGCTGTGAGCTGTAAAGAGAAGCTGAAACAAACAAACGCAAAACAACCACCACCAACCTACTACTACTGACTGTTAGTTAAATCAATTATAGTTGTACACACACACACAGACACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCAACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCAAAGCGCGCAACGACGCAGCAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTGTTACGCACCAGGATAAGAAAATGCGCGTAGCAGCGCAGAAGAGGGACGCACAGGAGGAAGCGGAAATTGCTGCTGGAAAACAAAACGCCCGGAAAACATAAAACATAAAATTGCCTTCATCCTCAGAGGCGCCCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGAGACACTCACCCCTAGAAAGGCAACTACAGGCCACAACTATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAATTTAAGCATAGAAAAAGTGAAGCAGAAGAAACATGTGAACAAACTGATAGTATTCGCTGATAAAATATCGTCGTAAATTGTTACATGTAGTAAGGGGGTGGGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BX628301             [                                                                                                                                                       TCAATTATAGTTGTACACACACACACAGACACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCAACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCAAAGCGCGCAACGACGCAGCAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTGTTACGCACCAGGATAAGAAAATGCGCGTAGCAGCGCAGAAGAGGGACGCACAGGAGGAAGCGGAAATTGCTGCTGGAAAACAAAACGCCCGGAAAACATAAAACATAAAATTGCCTTCATCCTCAGAGGCGCCCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGAGACACTCACCCCTAGAAAGGCAACTACAGGCCACAACTATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAATTTAAGCATAGAAAAAGTGAAGCAGAAGAAACATGTGAACAAACTGATAGTATTCGCTGATAAAATATCGTCGTAAATTGTTACATGTAGT AGGGGGTGGGGTACAGTGAGATAGAAGGAAGACATTGACATTGGATCTTACTACTACCACCGTTGTGTCTGGAAGAAGAGGGGTAAAGGTGGCGCCACACTTACTGTGCGTGCTGCGCTATTTTATTCGCGCGACTGTGTGTAGGCAAGCGTGTTCCGCGGGGTGTATTGTGACCCTCCCCCTCGGCCGAAAAGACCGTGACTGATTTTACTAGCCG                                                                                                                                                                                                                                        ]
[+] EMBL AGA285557            [                                                                                                                                                                                                             ATAACCTAACCTACCTACCAACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCAAAGCGCGCAACGACGCAGCAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTGTTACGCACCAGGATAAGAAAATGCGCGTAGCAGCGCAGAAGAGGGACGCACAGGAGGAAGCGGAAATTGCTGCTGGTAAACAAAACGCCCGGAAAACATAAAACATAAAATTGCCTTCATCCTCAGAGGCGCCCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGAGACAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL AGA284257            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGGGTAAAGGTGGCGCCACACTTACTGTGCGTGCTGCGCTATTTTATTCGCGCGACTGTGTGTAGGCAAGCGTGTTCCGCGGGGTGTATTGTGACCCTCCCCCTCGGCCGAAAAGACCGTGACTGATTTTACTAGCCGACACTAGAGAGACACACACACAGACATACACACAAAACGGAGAATAAGGGAAGCGAAACAAACGCGCCTGTGTGTGTGCAGTACTGTTTAAGCAAATCTTCTATAACCCGACTCCCCTTTCTCAGCATTTTATATATCACGTGCCCGTTTTTTCTCGCGCATGGTCTTTAGTAATTATTGCACTGCGATAAAGCATAGAAGAAGCAAGAGAAGAAAAAATACCCAAAAAAAA]


>consensus_6884#0 CCGGCACCGGCACCGGATGTCAACCCGCCGGCTACAACAGCCTCTTCGCCTCGCTGCTGC GTACCACCACGCTGTGAGCTGTAAAGAGAAGCTGAAACAAACAAACGCAAAACAACCACC ACCAACCTACTACTACTGACTGTTAGTTAGATCAATTATAGTTGTACACACACACACAGA CACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCAACCTACCTGCTGTTG GCGTGTACTGAGTACTGTGTGTCGGCAAAGCGCGCAACGACGCAGCAGAGAATCACTGTT GCGCATACGCATACCGCGCATACCGCACTGTTACGCACCAGGATAAGAAAATGCGCGTAG CAGCGCAGAAGAGGGACGCACAGGAGGAAGCGGAAATTGCTGCTGGAAAACAAAACGCCC GGAAAACATAAAACATAAAATTGCCTTCATCCTCAGAGGCGCCCAGATGCGAAGGGACAA CCTTTTTGAAGAGATAGAGAGAGACACTCACCCCTAGAAAGGCAACTACAGGCCACAACT ATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAATTTAAGCATAGAAAAAGTGAAG CAGAAGAAACATGTGAACAAACTGATAGTATTCGCTGATAAAATATCGTCGTAAATTGTT ACATGTAGTAAGGGGGTGGGGGACAGTGAGATAGAAGGAAGACATTGACATTGGATCTTA CTACTACCACCGTTGTGTCTGGAAGAAGAGGGGTAAAGGTGGCGCCACACTTACTGTGCG TGCTGCGCTATTTTATTCGCGCGACTGTGTGTAGGCAAGCGTGTTCCGCGGGGTGTATTG TGACCCTCCCCCTCGGCCGAAAAGACCGTGACTGATTTTACTAGCCGACACTAGAGAGAC ACACACACAGACATACACACAAAACGGAGAATAAGGGAAGCGAAACAAACGCGCCTGTGT GTGTGCAGTACTGTTTAAGCAAATCTTCTATAACCCGACTCCCCTTTCTCAGCATTTTAT ATATCACGTGCCCGTTTTTTCTCGCGCATGGTCTTTAGTAATTATTGCACTGCGATAAAG CATAGAAGAAGCAAGAGAAGAAAAAATACCCAAAAAAAA



consensusID : consensus_6884#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 637
fasta sequence
                              [CCGAGCACCGGCACCGGCTGTCAACCCGCCGGCTACAACAGCCTCTTCGCCTCGCTGCTGCGTACCACCACGCTGTGAGCTGTAAAGAGAAGCTGAAACAAACAAACGCAAAACAACCACCACCAACCTACTACTACTGACTGTTAGTTAAATCAATTATAGTTGTACACACATACAGCCACACACACAGAGAGACACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCAACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCATAGCGCGCAACGACGCAGAAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTATTACGCACCAGGATAAGAAAATGCGCGTAGCAGCGCAGAAGAGGGACGCATAGGAGGAAGTGGAAATTGCTGCTGGAAAACAAAACGCCCGGAAAACAAAAAAAAACATAAAATTGCCTTCATCCTCAGAGGCGCCCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGACACACACACCCTTAGAAAGGCAACTACAGGCCACAACTATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAATTTAAGCATAGAAAAAGTGAAACAGAAGAAACATGTGAACA]

[+] EMBL BM581065             [CCGAGCACCGGCACCGGCTGTCAACCCGCCGGCTACAACAGCCTCTTCGCCTCGCTGCTGCGTACCACCACGCTGTGAGCTGTAAAGAGAAGCTGAAACAAACAAACGCAAAACAACCACCACCAACCTACTACTACTGACTGTTAGTTAAATCAATTATAGTTGTACACACATACAGCCACACACACAGAGAGACACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCAACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCATAGCGCGCAACGACGCAGAAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTATTACGCACCAGGATAAGAAAATGCGCGTAGCAGCGCAGAAGAGGGACGCATAGGAGGAAGTGGAAATTGCTGCTGGAAAACAAAACGCCCGGAAAACAAAAAAAAACATAAAATTGCCTTCATCCTCAGAGGCGCCCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGACACACACACCCTTAGAAAGGCAACTACAGGCCACAACTATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAATTTAAGCATAGAAAAAGTGAAACAGAAGAAACATGTGAACA]


>consensus_6884#1 CCGAGCACCGGCACCGGCTGTCAACCCGCCGGCTACAACAGCCTCTTCGCCTCGCTGCTG CGTACCACCACGCTGTGAGCTGTAAAGAGAAGCTGAAACAAACAAACGCAAAACAACCAC CACCAACCTACTACTACTGACTGTTAGTTAAATCAATTATAGTTGTACACACATACAGCC ACACACACAGAGAGACACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCA ACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCATAGCGCGCAACGACGCAG AAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTATTACGCACCAGGATA AGAAAATGCGCGTAGCAGCGCAGAAGAGGGACGCATAGGAGGAAGTGGAAATTGCTGCTG GAAAACAAAACGCCCGGAAAACAAAAAAAAACATAAAATTGCCTTCATCCTCAGAGGCGC CCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGACACACACACCCTTAGAAAGG CAACTACAGGCCACAACTATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAATTTA AGCATAGAAAAAGTGAAACAGAAGAAACATGTGAACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6884#0      -CCGGCACCGGCACCGGATGTCAACCCGCCGGCTACAACAGCCTCTTCGCCTCGCTGCTG 59
consensus_6884#1      CCGAGCACCGGCACCGGCTGTCAACCCGCCGGCTACAACAGCCTCTTCGCCTCGCTGCTG 60
                       *  ************* ******************************************

consensus_6884#0      CGTACCACCACGCTGTGAGCTGTAAAGAGAAGCTGAAACAAACAAACGCAAAACAACCAC 119
consensus_6884#1      CGTACCACCACGCTGTGAGCTGTAAAGAGAAGCTGAAACAAACAAACGCAAAACAACCAC 120
                      ************************************************************

consensus_6884#0      CACCAACCTACTACTACTGACTGTTAGTTAGATCAATTATAGTTGTACACACACACAC-- 177
consensus_6884#1      CACCAACCTACTACTACTGACTGTTAGTTAAATCAATTATAGTTGTACACACATACAGCC 180
                      ****************************** ********************** ***   

consensus_6884#0      ------------AGACACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCA 225
consensus_6884#1      ACACACACAGAGAGACACCACTTCACACCGACCTATCTTTATAACCTAACCTACCTACCA 240
                                  ************************************************

consensus_6884#0      ACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCAAAGCGCGCAACGACGCAG 285
consensus_6884#1      ACCTACCTGCTGTTGGCGTGTACTGAGTACTGTGTGTCGGCATAGCGCGCAACGACGCAG 300
                      ****************************************** *****************

consensus_6884#0      CAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTGTTACGCACCAGGATA 345
consensus_6884#1      AAGAGAATCACTGTTGCGCATACGCATACCGCGCATACCGCACTATTACGCACCAGGATA 360
                       ******************************************* ***************

consensus_6884#0      AGAAAATGCGCGTAGCAGCGCAGAAGAGGGACGCACAGGAGGAAGCGGAAATTGCTGCTG 405
consensus_6884#1      AGAAAATGCGCGTAGCAGCGCAGAAGAGGGACGCATAGGAGGAAGTGGAAATTGCTGCTG 420
                      *********************************** ********* **************

consensus_6884#0      GAAAACAAAACGCCCGGAAAACATAAAA---CATAAAATTGCCTTCATCCTCAGAGGCGC 462
consensus_6884#1      GAAAACAAAACGCCCGGAAAACAAAAAAAAACATAAAATTGCCTTCATCCTCAGAGGCGC 480
                      *********************** ****   *****************************

consensus_6884#0      CCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGAGACACTCACCCCTAGAAAGG 522
consensus_6884#1      CCAGATGCGAAGGGACAACCTTTTTGAAGAGATAGAGAGACACACACACCCTTAGAAAGG 540
                      **************************************** **** ***** ********

consensus_6884#0      CAACTACAGGCCACAACTATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAATTTA 582
consensus_6884#1      CAACTACAGGCCACAACTATCCCCCTCCCCTCCCTTCGTAAAAGTAATTCACAGAATTTA 600
                      ************************************************************

consensus_6884#0      AGCATAGAAAAAGTGAAGCAGAAGAAACATGTGAACAAACTGATAGTATTCGCTGATAAA 642
consensus_6884#1      AGCATAGAAAAAGTGAAACAGAAGAAACATGTGAACA----------------------- 637
                      ***************** *******************                       

consensus_6884#0      ATATCGTCGTAAATTGTTACATGTAGTAAGGGGGTGGGGGACAGTGAGATAGAAGGAAGA 702
consensus_6884#1      ------------------------------------------------------------
                                                                                  

consensus_6884#0      CATTGACATTGGATCTTACTACTACCACCGTTGTGTCTGGAAGAAGAGGGGTAAAGGTGG 762
consensus_6884#1      ------------------------------------------------------------
                                                                                  

consensus_6884#0      CGCCACACTTACTGTGCGTGCTGCGCTATTTTATTCGCGCGACTGTGTGTAGGCAAGCGT 822
consensus_6884#1      ------------------------------------------------------------
                                                                                  

consensus_6884#0      GTTCCGCGGGGTGTATTGTGACCCTCCCCCTCGGCCGAAAAGACCGTGACTGATTTTACT 882
consensus_6884#1      ------------------------------------------------------------
                                                                                  

consensus_6884#0      AGCCGACACTAGAGAGACACACACACAGACATACACACAAAACGGAGAATAAGGGAAGCG 942
consensus_6884#1      ------------------------------------------------------------
                                                                                  

consensus_6884#0      AAACAAACGCGCCTGTGTGTGTGCAGTACTGTTTAAGCAAATCTTCTATAACCCGACTCC 1002
consensus_6884#1      ------------------------------------------------------------
                                                                                  

consensus_6884#0      CCTTTCTCAGCATTTTATATATCACGTGCCCGTTTTTTCTCGCGCATGGTCTTTAGTAAT 1062
consensus_6884#1      ------------------------------------------------------------
                                                                                  

consensus_6884#0      TATTGCACTGCGATAAAGCATAGAAGAAGCAAGAGAAGAAAAAATACCCAAAAAAAA 1119
consensus_6884#1      ---------------------------------------------------------
                                                                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)