These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6891#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1228 fasta sequence [TTAGTGATCGTAGGGAAAGGGGCTGCATATGCGCGCTCAGAGCTACAAGTTCGTCAATTAATACACCAAACTAATCTTCCCCTCCTTCCCACACCCATGGGAAAAGGAGTCGTGCCAGATCTTGATCCACAGTGCATTGCACCTGCTCGTACCTTAGCATTGCAGAAAGCCGACGTCGTGCTATTGCTAGGCGCGCGTTTGAACTGGATATTGCATTTCGGTAGACCACCGCGTTATAGTTCGGATGTAAAAATTATTCAAGTAGATGTAAATGCAGAAGAAATGCATAATAGCGTACCGAGCAAAGTAGCGATTCAATCACACATCACACCTTTTACTGAGCAATTAATTGACGCACTTGCCAAAAATCATTTCCGTTTTGGTTACGAAAATGCATGGTGGAAGGATCTGAAGGCAAAGTGTGAGACTAACCGGAAAGTAGTCGATGCAATGGCACTAAATGTGGAAACTCCTCTGAATTACTACGCAGTATTTCATCATTTGCAGCAGTACATTCCCAAGGATGCCATCATAGTTAGCGAGGGTGCCAACACGATGGATATTGGCCGAACCCTTTTGCACAACAAGTTCGCCCGGCATCGTCTGGACGCTGGTACCTTTGGCACAATGGGCGTAGGACCTGGTTTTGCAATTGCTGCAG-CTCTTTACTGCAGGGATCATTGCCCAGAGAAGAAAGTGATTTGTGTGGAAGGAGATTCTGCTTTCGGATTTTCAGGAATGGAAATTGAAACGATGGTACGCTATCAGCTTCCAATAGTGATAGTAATAGTGAACAACGGAGGAATATACGCGGGATTTGATAAGCAAACATATGATGATATGCGTTCCGGAGGAGATTTGACGCATGTAACTCCAGCATCAGCATTGACGCATGAAACACGTTACGAAAACATGATGAGTATGTTTGGCATGAAAGGCAATTTCGTACGCACCATTGTAGAGCTGCAGGCTGTTGTCAAGGATGCACTAACGGCAACAGACCGTCCACATATTATCAATATTGCAATCAGTCCGCAAGCGGACCGCAAACCGCAAGATTTTAAGTGGCTTACAGAATCGAAGCTTTAATCAGGGACCGCAAGATTTTAAGTGGCTTACAGAATCGAAGCTTTAATCAGGGAAAGAGTGAACATGTGGCATATGTTAATCGTTGGTGTTGGGGACTATTATTAACTGGTGGGTACAGATGGGAAAAATTGTGAAATGA] [+] EMBL BX626252 [TTAGTGATCGTAGGGAAAGGGGCTGCATATGCGCGCTCAGAGCTACAAGTTCGTCAATTAATACACCAAACTAATCTTCCCCTCCTTCCCACACCCATGGGAAAAGGAGTCGTGCCAGATCTTGATCCACAGTGCATTGCACCTGCTCGTACCTTAGCATTGCAGAAAGCCGACGTCGTGCTATTGCTAGGCGCGCGTTTGAACTGGATATTGCATTTCGGTAGACCACCGCGTTATAGTTCGGATGTAAAAATTATTCAAGTAGATGTAAATGCAGAAGAAATGCATAATAGCGTACCGAGCAAAGTAGCGATTCAATCACACATCACACCTTTTACTGAGCAATTAATTGACGCACTTGCCAAAAATCATTTCCGTTTTGGTTACGAAAATGCATGGTGGAAGGATCTGAAGGCAAAGTGTGAGACTAACCGGAAAGTAGTCGATGCAATGGCACTAAATGTGGAAACTCCTCTGAATTACTACGCAGTATTTCATCATTTGCAGCAGTACATTCCCAAGGATGCCATCATAGTTAGCGAGGGTGCCAACACGATGGATATTGGCCGAACCCTTTTGCACAACAAGTTCGCCCGGCATCGTCTGGACGCTGGTACCTTTGGCACNATGGGCGTANGACCTGGTTTTGCNATTGCTGCAGCCTCTTTACTGCAGGG ] [+] EMBL BX606556 [ CATCACACCTTTTACTGAGCAATTAATTGACGCACTTGCCAAAAATCATTTCCGTTTTGGTTACGAAAATGCATGGTGGAAGGATCTGAAGGCAAAGTGTGAGACTAACCGGAAAGTAGTCGATGCAATGGCACTAAATGTGGAAACTCCTCTGAATTACTACGCAGTATTTCATCATTTGCAGCAGTACATTCCCAAGGATGCCATCATAGTTAGCGAGGGTGCCAACACGATGGATATTGGCCG ] [+] EMBL BX625118 [ TCCTCTGAATTACTACGCAGTATTTCATCATTTGCAGCAGTACATTCCCAAGGATGCCATCATAGTTAGCGAGGGTGCCAACACGATGGATATTGGCCGAACCCTTTTGCACAACAAGTTCGCCCGGCATCGTCTGGACGCTGGTACCTTTGGCACAATGGGCGTAGGACCTGGTTTTGCAATTGCTGCAG CTCTTTACTGCAGGGATCATTGCCCAGAGAAGAAAGTGATTTGTGTGGAAGGAGATTCTGCTTTCGGATTTTCAGGAATGGAAATTGAAACGATGGTACGCTATCAGCTTCCAATAGTGATAGTAATAGTGAACAACGGAGGAATATACGCGGGATTTGATAAGCAAACATATGATGATATGCGTTCCGGAGGAGATTTGACGCATGTAACTCCAGCATCAGCATTGACGCATGAAACACGTTACGAAAACATGATGAGTATGTTTGGCATGAAAGGCAATTTCGTACGCACCATTGTAGAGCTGCAGGCTGTTGTCAAGGATGCACTAACGGCAACAGACCGTCCACATATTATCAATATTGCAATCAGTCCGCAAGCGGACCGCAAACCGCAAGATTTTAAGTGGCTTACAGAATCGAAGCTTTAATCAGGGACCGCAAGATTTTAAGTGGCTTACAGAATCGAAGCTTTAATCAGGGAAAGAGTGAACATGTGGCATATGTTAATCGTTGGTGTTGGGGACTATTATTAACTGGTGGGTACAGATGGGAAAAATTGTGAAATGA] [+] EMBL CNS08KFQ [ caTATTTCATCATTTGCAGCAGTACATTCCCAAGGATGCCATCATAGTTAGCGAGGGTGCCAACACGATGGATATTGGCCGAACCCTTTTGCACAACAAGTTCGCCCGGCATCGTCTGGACGCTGGTACCTTTGGCACAATGGGCGTAGGACCTGGTTTTGCAATTGCTGCAG CTCTTTACTGCAGGGA ] consensusID : consensus_6891#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 732 fasta sequence [CCCCGGATTATGTAAATTAATACACCAAACTAATCTTCCCTTCCTTTCCACACCCATGGGAAAAGGAGTCGTGCCAGATCTTGATCCACAGTGCATTGCACCTGCTACGTACCTTAGCATATGCAGAAAGCCGAGCGTCGTGCTATTGCTAGGCGCGCGTTTGAACTGGATATTGCATTTCGGTAGACCACCGCGTTATACGTGTCGGACTGTAANAACAGTTATTCANAGTAGACTGTAAATGCAGAATGAAATGCATAATAGCGTACCGAGTCAAAGTAGCGAGTTCAAATCACAGCTATCTAAACCTTTTACTTGAGCAATTAAATTGAACGCACTTTGCCAAGAAATCATATATCCCCGCNTCCAGGNTGTCCACCGAAAACATGGCATGGGTTGGCAAGCGTACTCCTGGAAGNGTCCCACAGGCTGGTGAAGGCAACTTAAACCCCGGCGACACAAGTAGTGTCGGACATGGCNAAACTGGGGCCAACCTAANACTGCTGGGACACAAACTTCNCCCTCCCCTGGAAACATTCNAACCGGTAAACACAGGCCAACGCTTNACTTATAGTACACACTTCCACCTTTTATCGGGGCCACAGGCAAAAGNNCTCTAACCAAATTNTAACNCTCCCATAAGCGGGGGNACCTAGGGGNCCCCAACACATCCTAAGCTTCACGANTANCTAAAAGGGCACTGTNAAACACGGGACGTTGNGGCCCCAAGAN] [+] EMBL AL695768 [CCCCGGATTATGTAAATTAATACACCAAACTAATCTTCCCTTCCTTTCCACACCCATGGGAAAAGGAGTCGTGCCAGATCTTGATCCACAGTGCATTGCACCTGCTACGTACCTTAGCATATGCAGAAAGCCGAGCGTCGTGCTATTGCTAGGCGCGCGTTTGAACTGGATATTGCATTTCGGTAGACCACCGCGTTATACGTGTCGGACTGTAANAACAGTTATTCANAGTAGACTGTAAATGCAGAATGAAATGCATAATAGCGTACCGAGTCAAAGTAGCGAGTTCAAATCACAGCTATCTAAACCTTTTACTTGAGCAATTAAATTGAACGCACTTTGCCAAGAAATCATATATCCCCGCNTCCAGGNTGTCCACCGAAAACATGGCATGGGTTGGCAAGCGTACTCCTGGAAGNGTCCCACAGGCTGGTGAAGGCAACTTAAACCCCGGCGACACAAGTAGTGTCGGACATGGCNAAACTGGGGCCAACCTAANACTGCTGGGACACAAACTTCNCCCTCCCCTGGAAACATTCNAACCGGTAAACACAGGCCAACGCTTNACTTATAGTACACACTTCCACCTTTTATCGGGGCCACAGGCAAAAGNNCTCTAACCAAATTNTAACNCTCCCATAAGCGGGGGNACCTAGGGGNCCCCAACACATCCTAAGCTTCACGANTANCTAAAAGGGCACTGTNAAACACGGGACGTTGNGGCCCCAAGAN] consensusID : consensus_6891#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 731 fasta sequence [GATCTGAAGGCAAAGTGTGAGACTATTCGGAAAGTAGTCGATGCAATGGCACTAAATGTGGAAACTCCTCTGAATTACTACGCAGTATTTCATCATTTGCACCAGTACATTCCCAAGGATGCCATCATAGTTAGCGAGGGTGCCAACACGATGGATATTGGCCGAACCCTTTTGCATAACAAGTTCGCCCGGCATCGTCTGGACGCTGGTACCTTTGGCACAATGGGCGTAGGACCTGGTTTTGCAATTGCTGCAGCTCTTTACTGCAGGGATCATTGCCCAGAGAAGAAAGTGATTTGTGTGGAAGGAGATTCTGCTTTCGGATTTTCAGGAATGGAAATTGAAACGATGGTACGCTATCAGCTTCCAATAGTGATAGTAATAGTGAACAACGGAGGAATATACGCGGGATTTGATAAGCAAACATATGATGATATGCGTTCCGGAGGAGATTTGACGCAAGTAACTCCAGCATCAGCATTGACGCATGAAACACGTTACGAAAACATGATGAGTATGTTTGGCATGAAAGGCAATTTCGTACGCACCATTGTAGAGCTGCAGGCTGTTGTCAAGGATGCACTAACGGCAACAGACCGTCCACATATTATCAATATTGCAATCAGTCCGCAAGCGGACCGCAAACCGCAAGATTTTAAGTGGCTTACAGAATCGAAGCTTTAATCAGGGAAAGAGTGAACATGTGGCATATGTTAATCGTTGGTGTTGGG] [+] EMBL BX608881 [GATCTGAAGGCAAAGTGTGAGACTATTCGGAAAGTAGTCGATGCAATGGCACTAAATGTGGAAACTCCTCTGAATTACTACGCAGTATTTCATCATTTGCACCAGTACATTCCCAAGGATGCCATCATAGTTAGCGAGGGTGCCAACACGATGGATATTGGCCGAACCCTTTTGCATAACAAGTTCGCCCGGCATCGTCTGGACGCTGGTACCTTTGGCACAATGGGCGTAGGACCTGGTTTTGCAATTGCTGCAGCTCTTTACTGCAGGGATCATTGCCCAGAGAAGAAAGTGATTTGTGTGGAAGGAGATTCTGCTTTCGGATTTTCAGGAATGGAAATTGAAACGATGGTACGCTATCAGCTTCCAATAGTGATAGTAATAGTGAACAACGGAGGAATATACGCGGGATTTGATAAGCAAACATATGATGATATGCGTTCCGGAGGAGATTTGACGCAAGTAACTCCAGCATCAGCATTGACGCATGAAACACGTTACGAAAACATGATGAGTATGTTTGGCATGAAAGGCAATTTCGTACGCACCATTGTAGAGCTGCAGGCTGTTGTCAAGGATGCACTAACGGCAACAGACCGTCCACATATTATCAATATTGCAATCAGTCCGCAAGCGGACCGCAAACCGCAAGATTTTAAGTGGCTTACAGAATCGAAGCTTTAATCAGGGAAAGAGTGAACATGTGGCATATGTTAATCGTTGGTGTTGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6891#0 TTAGTGATCGTAGGGAAAGGGGCTGCATATGCGCGCTCAGAGCTACAAGTTCGTCAATTA 60 consensus_6891#2 ------------------------------------------------------------ consensus_6891#1 ------------------------------------------------------------ consensus_6891#0 ATACACCAAACTAATCTTCCCCTCCTTCCCACACCCATGGGAAAAGGAGTCGTGCCAGAT 120 consensus_6891#2 ------------------------------------------------------------ consensus_6891#1 ------------------------------------------------------------ consensus_6891#0 CTTGATCCACAGTGCATTGCACCTGCTCGTACCTTAGCATTGCAGAAAGCCGACGTCGTG 180 consensus_6891#2 ------------------------------------------------------------ consensus_6891#1 ------------------------------------------------------------ consensus_6891#0 CTATTGCTAGGCGCGCGTTTGAACTGGATATTGCATTTCGGTAGACCACCGCGTTATAGT 240 consensus_6891#2 ------------------------------------------------------------ consensus_6891#1 ------------------------------------------------------------ consensus_6891#0 TCGGATGTAAAAATTATTCAAGTAGATGTAAATGCAGAAGAAATGCATAATAGCGTACCG 300 consensus_6891#2 ------------------------------------------------------------ consensus_6891#1 ------------------------------------------------------------ consensus_6891#0 AGCAAAGTAGCGATTCAATCACACATCACACCTTTTACTGAGCAATTAATTGACGCACTT 360 consensus_6891#2 ------------------------------------------------------------ consensus_6891#1 ------------------------------------------------------------ consensus_6891#0 GCCAAAAATCATTTCCGTTTTGGTTACGAAAATGCATGGTGGAAGGATCTGAAGGCAAAG 420 consensus_6891#2 ---------------------------------------------GATCTGAAGGCAAAG 15 consensus_6891#1 ------------------------------------------------CCCCGGATTATG 12 * * * * consensus_6891#0 TGTGAGACTAACCGGAA--AGTAGTCGATGCAATGGCAC-TAAATGTGGAAACTCCTCTG 477 consensus_6891#2 TGTGAGACTATTCGGAA--AGTAGTCGATGCAATGGCAC-TAAATGTGGAAACTCCTCTG 72 consensus_6891#1 TAAATTAATACACCAAACTAATCTTCCCTTCCTTTCCACACCCATGGGAAAAGGAGTC-G 71 * * ** * ** * * ** * * * *** *** * *** ** * consensus_6891#0 AATTACTACGCAGTATTTCATCATTTGCAGCAG-TACATTCCCAAGGATGCCATCATAGT 536 consensus_6891#2 AATTACTACGCAGTATTTCATCATTTGCACCAG-TACATTCCCAAGGATGCCATCATAGT 131 consensus_6891#1 TGCCAGATCTTGATCCACAGTGCATTGCACCTGCTACGTACCTTAGCATATGCAGAAAGC 131 * * * * ***** * * *** * ** ** ** * ** consensus_6891#0 TAGCGAGGGTGCCAACACGATGGATATTGGCCGAACCCTTTTGCACAACAAGTTCGCCCG 596 consensus_6891#2 TAGCGAGGGTGCCAACACGATGGATATTGGCCGAACCCTTTTGCATAACAAGTTCGCCCG 191 consensus_6891#1 CGAGCGTCGTGCTATTGCTAGGCGCGC-GTTTGAACTGGATATTGCATTTCGGTAGACCA 190 **** * * * * * **** * * * * * ** consensus_6891#0 GCATCGTCTGGACGCTGGTACCTTTGGCACAATGGGCGTAGGACCTGGTTTTGCAATTGC 656 consensus_6891#2 GCATCGTCTGGACGCTGGTACCTTTGGCACAATGGGCGTAGGACCTGGTTTTGCAATTGC 251 consensus_6891#1 CCGCGTTATACGTGTCGG----ACTGTAANAACAGTTATTCANAGTAGACT-GTAAATGC 245 * * * * ** ** * ** * * * * * * ** *** consensus_6891#0 TGCAGCTCTTTACTGCAGGGATCATTGCCCAGAGAAGAAAGTGATTTGTGTGGAAGGAGA 716 consensus_6891#2 TGCAGCTCTTTACTGCAGGGATCATTGCCCAGAGAAGAAAGTGATTTGTGTGGAAGGAGA 311 consensus_6891#1 AGAA----TGAAATGCATAATAGCGTACCGAGTCAAAGTAGCGAGTTCAAATCACAGCTA 301 * * * * **** * ** ** ** ** ** ** * * * consensus_6891#0 TTCTGCTTTCGGATTTTCAGGAATGGAAATTGAAACGATGGTACGCTATCAGCTTCCAAT 776 consensus_6891#2 TTCTGCTTTCGGATTTTCAGGAATGGAAATTGAAACGATGGTACGCTATCAGCTTCCAAT 371 consensus_6891#1 TCTAAACCTTTTACTTG-AGCAATT-AAATTGAACGCACTTTGC-CAAGAAATCATATAT 358 * * * ** ** *** ******** * * * * * * ** consensus_6891#0 AGTGATAGTAATAGTGAACAACGGAGGAATATACGCGGGATTTGATAAGCAAACATATGA 836 consensus_6891#2 AGTGATAGTAATAGTGAACAACGGAGGAATATACGCGGGATTTGATAAGCAAACATATGA 431 consensus_6891#1 CCCCGCNTCCAGGNTGTCCACCGAAAACATG---GCATGGGTTGGCAAGCGTACTCCTGG 415 * ** ** ** * ** ** * *** **** ** ** consensus_6891#0 TGATATGCGTTCCGGAGGAGATTTGACGCATGT--AACTCCAGCATCAGCATTGACGCAT 894 consensus_6891#2 TGATATGCGTTCCGGAGGAGATTTGACGCAAGT--AACTCCAGCATCAGCATTGACGCAT 489 consensus_6891#1 ----AAGNGTCCCACAGGCTGGTGAAGGCAACTTAAACCCCGGCGACACAAGTAGTGTCG 471 * * ** ** *** * * *** * *** ** ** ** * * * consensus_6891#0 GAAACACGTTA--CGAAAACATGATGAGTATGTTTGG-CATGAAAGGCAATTTCGTACGC 951 consensus_6891#2 GAAACACGTTA--CGAAAACATGATGAGTATGTTTGG-CATGAAAGGCAATTTCGTACGC 546 consensus_6891#1 GACATGGCNAAACTGGGGCCAACCTAANACTGCTGGGACACAAACTTCNCCCTCCCCTGG 531 ** * * * ** * * ** * ** ** ** * ** * consensus_6891#0 ACCATTGTAGAGCTGCAGGCTGTTGTCAAGGATGCACTAACGGCAACAGACCGTCCACAT 1011 consensus_6891#2 ACCATTGTAGAGCTGCAGGCTGTTGTCAAGGATGCACTAACGGCAACAGACCGTCCACAT 606 consensus_6891#1 AAACATTCNAACCGGTAAACACAGGCCAACGCTTNACTTATAGTA-CACACT-TCCACCT 589 * * * * * * * * *** * * *** * * * ** ** ***** * consensus_6891#0 ATTATCAATATTGCAATCA----GTCCGCAAGCGGACCGCAA-ACCGCAAGATTTTAAGT 1066 consensus_6891#2 ATTATCAATATTGCAATCA----GTCCGCAAGCGGACCGCAA-ACCGCAAGATTTTAAGT 661 consensus_6891#1 TTTATCGGGGCCACAGGCAAAAGNNCTCTAACCAAATTNTAACNCTCCCATAAGCGGGGG 649 ***** ** ** * ** * * ** * * * * * consensus_6891#0 GGCTTACAGAATCGAAGCTTTAATCAGGGACCGCAAGATTTTAAGTGGCTTACAGAATCG 1126 consensus_6891#2 GGCTTACAGAATCGAAGCTTTAATCAGGGA------------------------------ 691 consensus_6891#1 NACCTAGGGGNCCCCAACACATCCTAAGCTTC---------------------------- 681 * ** * * * * * * consensus_6891#0 AAGCTTTAATCAGGGAAAGAGTGAACATGTGGCATATGTTAATCGTTGG-TGTTGGGGAC 1185 consensus_6891#2 ----------------AAGAGTGAACATGTGGCATATGTTAATCGTTGG-TGTTGGG--- 731 consensus_6891#1 ----------------ACGANTANCTAAAAGGGCACTGTNAAACACGGGACGTTGNGGCC 725 * ** * * ** *** ** * ** **** * consensus_6891#0 TATTATTAACTGGTGGGTACAGATGGGAAAAATTGTGAAATGA 1228 consensus_6891#2 ------------------------------------------- consensus_6891#1 CCAAGAN------------------------------------ 732 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||