cluster # 69

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Anopheles gambiae
cluster # 69 cluster # 69 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_69#0 length = 636 sequences # 1

consensus_69#1 length = 575 sequences # 1

consensusID : consensus_69#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 636
fasta sequence

                              [CCGCAAAGAAATACCCAAGTTCATGGGCATGCCACTGTACGCCGCACGGCAGCAAATGTCTGGCGGGAGCGTTGGTGCAGGTGCATCGCCGCTGGAAGGTGGTTCGGCCAGCGGACAGCAGGCCGCATTCGTAAGTAGCCATCTGTACGGTTCACGCATTGGTAGCGGTGGCATTGGCAACAGCAGCAGTAGTGGTGGTGGTGGTGGTGCTGGTGGCGGTAGTAGTGGTAGTTACTATAGCAACTCCGACTTTAATCATCCTTCGTACGCTCGCTATCGTAGTCGCTTTGAGCGATTTGAATCGTAGTTGTCTTCTCTGTTTTGCGTATGTGATTGCGTGCGTGCATGCGTGCAACAACGCCACGTGCATCTTTATTAATTTCTGTGTTGTATGTGGTTCGTGTGCATAACATTGGTTGTATAGCTTCGGAAAAACGGGGGTGGTGGTAATTCTGTACATTTGGCAGGTGTGTTCAATAGTGCTTTGCAGGTTAAAGGCAATTCGGCTCTTCTTAACCCCTTCTTATGTGTGGTGATGGTAATGTTTTCCGTTGGAAAATTGTCCACGCTGTACAGACACGCACGCTGCTGTGTGGAATAGAATTAAGGCGCATGAACAAAATTACAACTTTTTCT]

[+] EMBL BM629505             [CCGCAAAGAAATACCCAAGTTCATGGGCATGCCACTGTACGCCGCACGGCAGCAAATGTCTGGCGGGAGCGTTGGTGCAGGTGCATCGCCGCTGGAAGGTGGTTCGGCCAGCGGACAGCAGGCCGCATTCGTAAGTAGCCATCTGTACGGTTCACGCATTGGTAGCGGTGGCATTGGCAACAGCAGCAGTAGTGGTGGTGGTGGTGGTGCTGGTGGCGGTAGTAGTGGTAGTTACTATAGCAACTCCGACTTTAATCATCCTTCGTACGCTCGCTATCGTAGTCGCTTTGAGCGATTTGAATCGTAGTTGTCTTCTCTGTTTTGCGTATGTGATTGCGTGCGTGCATGCGTGCAACAACGCCACGTGCATCTTTATTAATTTCTGTGTTGTATGTGGTTCGTGTGCATAACATTGGTTGTATAGCTTCGGAAAAACGGGGGTGGTGGTAATTCTGTACATTTGGCAGGTGTGTTCAATAGTGCTTTGCAGGTTAAAGGCAATTCGGCTCTTCTTAACCCCTTCTTATGTGTGGTGATGGTAATGTTTTCCGTTGGAAAATTGTCCACGCTGTACAGACACGCACGCTGCTGTGTGGAATAGAATTAAGGCGCATGAACAAAATTACAACTTTTTCT]




>consensus_69#0
CCGCAAAGAAATACCCAAGTTCATGGGCATGCCACTGTACGCCGCACGGCAGCAAATGTC
TGGCGGGAGCGTTGGTGCAGGTGCATCGCCGCTGGAAGGTGGTTCGGCCAGCGGACAGCA
GGCCGCATTCGTAAGTAGCCATCTGTACGGTTCACGCATTGGTAGCGGTGGCATTGGCAA
CAGCAGCAGTAGTGGTGGTGGTGGTGGTGCTGGTGGCGGTAGTAGTGGTAGTTACTATAG
CAACTCCGACTTTAATCATCCTTCGTACGCTCGCTATCGTAGTCGCTTTGAGCGATTTGA
ATCGTAGTTGTCTTCTCTGTTTTGCGTATGTGATTGCGTGCGTGCATGCGTGCAACAACG
CCACGTGCATCTTTATTAATTTCTGTGTTGTATGTGGTTCGTGTGCATAACATTGGTTGT
ATAGCTTCGGAAAAACGGGGGTGGTGGTAATTCTGTACATTTGGCAGGTGTGTTCAATAG
TGCTTTGCAGGTTAAAGGCAATTCGGCTCTTCTTAACCCCTTCTTATGTGTGGTGATGGT
AATGTTTTCCGTTGGAAAATTGTCCACGCTGTACAGACACGCACGCTGCTGTGTGGAATA
GAATTAAGGCGCATGAACAAAATTACAACTTTTTCT

consensusID : consensus_69#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence

                              [ATTCGGCTGTTCTTCATCGGCATGACGATGCTGCAGCTGCTGTGGGACCTGATGCTGGTCGGCACGATGCTGTACCACCATCGGATGGTGGAGAAGGTGCTGAGCGGCATCATTGCCGTCGTGACGTGGTTCGTGACGTACCGGGCCTGGTACCCGCTACCGACCGTGCTGCCCGATCCGGTTGGCAAGGGGCTGTTCAACTACCAGTCCGTCAGCAAGCCGGAAATTGGGCTGCGCCGAAGGGCCAGCTTACTGCAGCCCGGTTCCTCTGCAGCGGCCGGAGCCAATGCGGGTGGCAGCCCCAAAGAAATACCCAAGTTCATGGGCATGCCACTGTACGCCGCAAGGCAGCAAATGTCTGGCGGGAGCGTTGGTGCAGGTGCATCGCCGCTGGAAGGTGGTTCGGCCAGCGGACAGCAGGCCGCATTCGGTACGGCCACTTCGAAGCGTCGAAAAATGCTGGACAATCGGTTTCATCCCTCTGGCTGATAAGAAGTCGGTCCTTCATACTCACTTTGGATGGGCTACGACGAAGTGGGAGGGGGGGTACAGTAAGAGAGATAGGTTATATTTTT]

[+] EMBL BX617702             [ATTCGGCTGTTCTTCATCGGCATGACGATGCTGCAGCTGCTGTGGGACCTGATGCTGGTCGGCACGATGCTGTACCACCATCGGATGGTGGAGAAGGTGCTGAGCGGCATCATTGCCGTCGTGACGTGGTTCGTGACGTACCGGGCCTGGTACCCGCTACCGACCGTGCTGCCCGATCCGGTTGGCAAGGGGCTGTTCAACTACCAGTCCGTCAGCAAGCCGGAAATTGGGCTGCGCCGAAGGGCCAGCTTACTGCAGCCCGGTTCCTCTGCAGCGGCCGGAGCCAATGCGGGTGGCAGCCCCAAAGAAATACCCAAGTTCATGGGCATGCCACTGTACGCCGCAAGGCAGCAAATGTCTGGCGGGAGCGTTGGTGCAGGTGCATCGCCGCTGGAAGGTGGTTCGGCCAGCGGACAGCAGGCCGCATTCGGTACGGCCACTTCGAAGCGTCGAAAAATGCTGGACAATCGGTTTCATCCCTCTGGCTGATAAGAAGTCGGTCCTTCATACTCACTTTGGATGGGCTACGACGAAGTGGGAGGGGGGGTACAGTAAGAGAGATAGGTTATATTTTT]




>consensus_69#1
ATTCGGCTGTTCTTCATCGGCATGACGATGCTGCAGCTGCTGTGGGACCTGATGCTGGTC
GGCACGATGCTGTACCACCATCGGATGGTGGAGAAGGTGCTGAGCGGCATCATTGCCGTC
GTGACGTGGTTCGTGACGTACCGGGCCTGGTACCCGCTACCGACCGTGCTGCCCGATCCG
GTTGGCAAGGGGCTGTTCAACTACCAGTCCGTCAGCAAGCCGGAAATTGGGCTGCGCCGA
AGGGCCAGCTTACTGCAGCCCGGTTCCTCTGCAGCGGCCGGAGCCAATGCGGGTGGCAGC
CCCAAAGAAATACCCAAGTTCATGGGCATGCCACTGTACGCCGCAAGGCAGCAAATGTCT
GGCGGGAGCGTTGGTGCAGGTGCATCGCCGCTGGAAGGTGGTTCGGCCAGCGGACAGCAG
GCCGCATTCGGTACGGCCACTTCGAAGCGTCGAAAAATGCTGGACAATCGGTTTCATCCC
TCTGGCTGATAAGAAGTCGGTCCTTCATACTCACTTTGGATGGGCTACGACGAAGTGGGA
GGGGGGGTACAGTAAGAGAGATAGGTTATATTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_69#0      CCGCAAAGAAATACCCAAGTTCATGGGCATGCCACTGTACGCCGCACGGCAGCAAATGTC 60
consensus_69#1      ----------------------------ATTCGGCTGTTCTTCAT-CGGCATGACGATGC 31
                                                ** *  **** *  *   *****  *     *

consensus_69#0      TGGCGGGAGCGTTGGTGCAGGTGCATCGCCGCTGGAAGGTGGTTCGGCCAGCGGACAGCA 120
consensus_69#1      TGCAGCTGCTGTGGGACCTGATGC-TGGTCGGCACGATGCTGTACCACCATCGGATGGTG 90
                    **  *     ** **  * * *** * * **     * *  ** *  *** ****  *  

consensus_69#0      GGCCGCATTCGTAAGTAGCCATCTGTACGGTTCACGCATTGGTAGCGGTGGCATTGGCAA 180
consensus_69#1      GAGAAGGTGC-TGAGCGGC-ATCATTGCCGTCGTGACGTGGTTCGTGACG-TACCGGGCC 147
                    *      * * * **  ** ***  * * **     * * * * * *  *  *  **   

consensus_69#0      CAGCAGCAG-TAGTGGTGGTGGTGGTGGTGCTGGTGGCGGTAGTAGTGGTAGTTACTATA 239
consensus_69#1      TGGTACCCGCTACCGACCGTGCTGCCCGATCCGGT--TGGCA--AGGGGCTGTT------ 197
                      * * * * **  *   *** **   *  * ***   ** *  ** **  ***      

consensus_69#0      GCAACTCCGACTTTAATCATCCTTCGTACGCTCGCTATCGTAGTCGCTTTGAGCGATTTG 299
consensus_69#1      -CAACTACCAGT-------CCGTCAGCAAGCCGGAAATTG-GGCTGCGCCGAAGGGCC-- 246
                     ***** * * *        * *  * * **  *  ** *  *  **   **  *     

consensus_69#0      AATCGTAGTTGTCTTCTCTGTTTTGCGTATGTGATTGCGTGCGTGCATGCGTGCAACAAC 359
consensus_69#1      ------AGCTTACTGCAGCCCGGTTCCTCTGCAGCGGCCGGAGCCAATGCGGGTGGCAGC 300
                          ** *  ** *       * * * **     **  * *   ***** *   ** *

consensus_69#0      GCCACGTGCATCTTTATTAATTTCTGTGTTGTATGTGGTTCGTGTGCATAACATTGGTTG 419
consensus_69#1      CCCAAAGAAATACCCA--AGTTCATGGGCATGCCACTGTACGC-CGCAAGGCAGCAAATG 357
                     ***     **    *  * **  ** *         ** **   ***   **     **

consensus_69#0      TATAGCTTCGGAAAAACGGGGGTGGTGGTAATTCTGTACATTTGGCAGGTGTGTTCAATA 479
consensus_69#1      TCTGGC-----GGGAGCGTTGGTGCAGGTGCATC---GCCGCTGGAAGGTGGTTCGGCCA 409
                    * * **        * **  ****  ***   **    *   *** *****  *     *

consensus_69#0      GTGCTTTGCAGGTTAAAGGCAATTCGGCT-CTTCTTAACCCCTTCTTATGTGTGGTGATG 538
consensus_69#1      GCGGACAGCAGGCCGCATTCGGTACGGCCACTTCGAAGCGTCGAAAAATGCTGGACAATC 469
                    * *    *****    *  *  * ****  ****  * *  *     ***   *   ** 

consensus_69#0      G---TAATGTTTTCCGTTGGAAAATTGTCCACGCTGTACAGACACGCACGCTG--CTGTG 593
consensus_69#1      GGTTTCATCCCTCTGGCTGATAAGAAGTCGGTCCTTCATACTCACTTTGGATGGGCTACG 529
                    *   * **   *   * **  **   ***    **  * *  ***    * **  **  *

consensus_69#0      TGGAATAGAATTAAGGCGCATGAACAAAATTACAACTTTTTCT--- 636
consensus_69#1      ACGAAGTGGGAGGGGGGGTACAGTAAGAGAGATAGGTTATATTTTT 575
                      ***  *      ** * *     * *   * *  ** *  *