These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6902#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 913 fasta sequence [CCGGCGGCCG-GGCAGATTCACAATCGGCAACGATCGCTCGCAACTCCCCATTTAGCACAATAAACGCTCTCGCAAACAGGCCCGCACCACCACCGAGCGTGCGCATCGCGGTGACGACGTTGTTTAACAACGGAAATCCCGCGCGGCAAAACCTGTTCGCGGCTATCGTTCGTGGTCGTGGTCGGGTGTGTGTGGCACACCGTGTAGTGTGGGCAGAGTGTAAGGTCGCTGTAAGGAAATCAGCACCTCGCATCAACACTCTCGGCTTTAGCGCCACTACCAACAGTC-AGTCAGTTCGTCACGATGAGTGTAACAAGTTTGGTGGATGGTGAATTTTTGCTCCGGCCAAGTAACCGGGCATGCTGGATTTTTCTCATTTTTGCCTCCTCGCTATGTCTGACAACGGCGCAAACTGTACAACAATTTGCATATAATACGGATTTCTTCTTTCGAAATCCCTCGGAAATCTATCCTCAACCGGTGTACGTACCGAAATCTCAACAGGAGACAATAAAAACATACGAAAAAATACAATTTGAAGACTCCTCTCTGCGGTTTCCGGCGCCGAAGCAGAATGAGCAACAGCAACCTCAGCCTCAACCGCCAAAAACGCCCGGAGCGATGCAGTTCGCCTGGAACATGATGAAGATGATGGTATTACCCCGACAGGACAACACAGTCATCTGTCCAATACTGCCACAAACCCTTCTGGCGACCCTGCACGATGGGGCCGATCGTGCTGCTCAAGCCGAGCTAAGCTCCTCATTACTTGCCACCTCGCAGGAACTAGGACAGATCGTGCGCAGTCAAGAGCTCGCCATTCGAGGGTCGAGTGTAAACAGGCTCGATCAGGCGATGGCCGTCTTTCTCGGAACGGATACGAAAATCAGCAAACCCATCCAGGATAAAGCAC] [+] EMBL BM612841 [CCGGCGGCCGAGGCAGATTCACAATCGGCAACGATCGCTCGCAACTCCCCATTTAGCACAATAAACGCTCTCGCAAACAGGCCCGCACCACCACCGAGCGTGCGCATCGCGGTGACGACGTTGTTTAACAACGGAAATCCCGCGCGGCAAAACCTGTTCGCGGCTATCGTTCGTGGTCGTGGTCGGGTGTGTGTGGCACACCGTGTAGTGTGGGCAGAGTGTAAGGTCGCTGTAAGGAAATCAGCACCTCGCATCAACACTCTCGGCTTTAGCGCCACTACCAACAGTC AGTCAGTTCGTCACGATGAGTGTAACAAGTTTGGTGGATGGTGAATTTTTGCTCCGGCCAAGTAACCGGGCATGCTGGATTTTTCTCATTTTTGCCTCCTCGCTATGTCTGACAACGGCGCAAACTGTACAACAATTTGCATATAATACGGATTTCTTCTTTCGAAATCCCTCGGAAATCTATCCTCAACCGGTGTACGTACCGAAATCTCAACAGGAGACAATAAAAACATACGAAAAAATACAATTTGAAGACTCCTCTCTGCGGTTTCCGGCGCCGAAGCAGAATGAGCAACAGCAACCTCAGCCTCAACCGCCAAAAACGCCCGGAGCGATGCAGTT ] [+] EMBL BM637596 [ CCG GGCAGATTCACAATCGGCAACGATCGCTCGCAACTCCCCATTTAGCACAATAAACGCTCTCGCAAACAGGCCCGCACCACCACCGAGCGTGCGCATCGCGGTGACGACGTTGTTTAACAACGGAAATCCCGCGCGGCAAAACCTGTTCGCGGCTATCGTTCGTGGTCGTGGTCGGGTGTGTGTGGCACACCGTGTAGTGTGGGCAGAGTGTAAGGTCGCTGTAAGGAAATCAGCACCTCGCATCAACACTCTCGGCTTTAGCGCCACTACCAACAGTC AGTCAGTTCGTCACGATGAGTGTAACAAGTTTGGTGGATGGTGAATTTTTGCTCCGGCCAAGTAACCGGGCATGCTGGATTTTTCTCATTTTTGCCTCCTCGCTATGTCTGACAACGGCGCAAACTGTACAACAATTTGCATATAATACGGATTTCTTCTTTCGAAATCCCTCGGAAATCTATCCTCAACCGGTGTACGTACCGAAATCTCAACAGGAGACAATAAAAACATACGAAAAAATACAATTTGAAGACTCCTCTCTGCGGTTTCCGGCGCCGAAGCAGAATGAGCAACAGCAACCTCAGCCTCAACCGCCAAAAACGCCCGGAGCGATGCAGTTCGCCTGGAACATGATGAAGATGATGGTATTACCCCGACAGGACAACACAGTCATCTGTCCAATACTGCCACAAACCCTTC ] [+] EMBL BX607824 [ ACCTGTTCGCGGCTATCGTTCGTGGTCGTGGTCGGGTGTGTGTGGCACACCGTGTAGTGTGGGCAGAGTGTAAGGTCGCTGTAAGGAAATCAGCACCGCGCATCATCACTCTCGGCCTTAGCGCCACTACCAACAGTCAAGTCAGTTCGTCACGATGAGTGTAACAAGCTTGGTGGATGGTGAATTTTTGCTCCGGCCAAGTAACCGGGCATGCTGGATTTTTCTCATTTTTGCCTCCTCGCTATATCTGACAACGGCGCAAACTGTACAACAATTTGCATATAATACGGATTTCTTCTTTCGAAATCCCTCGGAAATCTATCCTCAACCGGTGTACGTACCGAAATCTCAACAGGAGACAATAAAAACATACGAAAAAATACAATTTGAAGACTCTTCTCTGCGGTTTCCGGCGCCGAAGCAGAATGAGCAACAGCAACCTCAGCCTCAACCGCCAAAAACGCCCGGAGCGATGCAGTTCGCCTGGAACATGATGAAGATGATGGTATTACCCCGACAGGACAACACAGTCATCTGTCCAATACTGCCACAAACCCTTCTGGCGACCCTGCACGATGGGGCCGATCGTGCTGCTCAAGCCGAGCTAAGCTCCTCATTACTTGCCACCTCGCAGGAACTAGGACAGATCGTGCGCAGTCAAGAGCTCGCCATTCGAGGGTCGAGTGTAAACAGGCTCGATCAGGCGATGGCCGTCTTTCTCGGAACGGATACGAAAATCAGCAAACCCATCCAGGATAAAGCAC] [+] EMBL BX603784 [ AAGTAACCGGGCATGCTGGATTTTTCTCATTTTTGCCTCCTCGCTATGTCTGACAACGGCGCAAACTGTACAACAATTTGCATATAATACGGATTTCTTCTTTCGAAATCCCTCGGAAATCTATCCTCAACCGGTGTACGTACCGAAATCTCAACAGGAGACAATAAAAACATACGAAAAAATACAATTTGAAGACTCCTCTCTGCGGTTTCCGGCGCCGAAGCAGAATGAGCAACAGCAACCTCAGCCTCAACCGCCAAAAACGCCCGGAGCGATGCAGTTCGCCTGGAACATGATGAAGATGATGGTATTACCCCGACAGGACAACACAGTCATCTGTCCAATACTGCCACAAACCCTTCTGGCGACCCTGCACGATGGGGCCGATCGTGCTGCTCAAGCCGAGCTAAGCTCCTCATTACTTGCCACCTCGCAGGAACTAGGACAGATCGTGCGCAGTCAAGAGCTCGCCATTCGAGGGTCGAGTGTAAACAGGCTCGATCAGGCGATGGCCGTC ] [+] EMBL BX606918 [ cgAACATACGAAAAAATACAATTTGAAGACTCCTCTCTGCGGTTTCCGGCGCCGAAGCAGAATGAGCAACAGCAACCTCAGCCTCAACCGCCAAAAACGCCCGGAGCGATGCAGTTCGCCTGGAACATGATGAAGATGATGGTATTACCCCGACAGGACAACACAGTCATCTGTCCAATACTGCCACAAACCCTTCTGGCGACCCTGCACGATGGGGCCGATCGTGCTGCTCAAGCCGAGCTAAGCTCCTCATTACTTGCCACCTCGCAGGAACTAGGACAG ] consensusID : consensus_6902#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence [CAAGAATCGGCCCGAGGTATTACCCGACAGGACAACACAGTCATCTGTCCAATACTGCCACAAACCCTTCTGGCGACCCTGCACGATGGGGCCGATCGTGCTGCTCAAGCCGAGCTAAGCTCCTCATTACTTGCCACCTCGCAGGAACTAGGACAGATCGTGCGCAGTCAAGAGCTCGCCATTCGAGGGTCGAGTGTAAACAGGCTCGATCAGGCGATGGCCGTCTTTCTCGGAACGGATACGAAAATCAGCAAACCCATCCAGGATAAAGCACTCCAGAATGGGGTAGAGTTTGTGCCGGTGAATTTCCTCAATCGCAACACCGCTGCCGCTACTGCCAATGATTGGGTGGCGCGAAAATCGCAAGGCCTTATCCGTGAAATCGTTGCACCCAGTAAGTCTTGCTAATTACTCACAAAGAAAACCAAAAACTAATTCGAGTCTTGTTTGCAATAATTTCAGCTGCGTCTCGACGCCTCAAGCACGTCTACTTATGGCGAGCGTGATCTATT] [+] EMBL BX468640 [CAAGAATCGGCCCGAGGTATTACCCGACAGGACAACACAGTCATCTGTCCAATACTGCCACAAACCCTTCTGGCGACCCTGCACGATGGGGCCGATCGTGCTGCTCAAGCCGAGCTAAGCTCCTCATTACTTGCCACCTCGCAGGAACTAGGACAGATCGTGCGCAGTCAAGAGCTCGCCATTCGAGGGTCGAGTGTAAACAGGCTCGATCAGGCGATGGCCGTCTTTCTCGGAACGGATACGAAAATCAGCAAACCCATCCAGGATAAAGCACTCCAGAATGGGGTAGAGTTTGTGCCGGTGAATTTCCTCAATCGCAACACCGCTGCCGCTACTGCCAATGATTGGGTGGCGCGAAAATCGCAAGGCCTTATCCGTGAAATCGTTGCACCCAGTAAGTCTTGCTAATTACTCACAAAGAAAACCAAAAACTAATTCGAGTCTTGTTTGCAATAATTTCAGCTGCGTCTCGACGCCTCAAGCACGTCTACTTATGGCGAGCGTGATCTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6902#0 CCGGCGGCCGGGCAGATTCACAATCGGCAACGATCGCTCGCAACTCCCCATTTAGCACAA 60 consensus_6902#1 ------------------------------------------------------------ consensus_6902#0 TAAACGCTCTCGCAAACAGGCCCGCACCACCACCGAGCGTGCGCATCGCGGTGACGACGT 120 consensus_6902#1 ------------------------------------------------------------ consensus_6902#0 TGTTTAACAACGGAAATCCCGCGCGGCAAAACCTGTTCGCGGCTATCGTTCGTGGTCGTG 180 consensus_6902#1 ------------------------------------------------------------ consensus_6902#0 GTCGGGTGTGTGTGGCACACCGTGTAGTGTGGGCAGAGTGTAAGGTCGCTGTAAGGAAAT 240 consensus_6902#1 ------------------------------------------------------------ consensus_6902#0 CAGCACCTCGCATCAACACTCTCGGCTTTAGCGCCACTACCAACAGTCAGTCAGTTCGTC 300 consensus_6902#1 ------------------------------------------------------------ consensus_6902#0 ACGATGAGTGTAACAAGTTTGGTGGATGGTGAATTTTTGCTCCGGCCAAGTAACCGGGCA 360 consensus_6902#1 ------------------------------------------------------------ consensus_6902#0 TGCTGGATTTTTCTCATTTTTGCCTCCTCGCTATGTCTGACAACGGCGCAAACTGTACAA 420 consensus_6902#1 ------------------------------------------------------------ consensus_6902#0 CAATTTGCATATAATACGGATTTCTTCTTTCGAAATCCCTCGGAAATCTATCCTCAACCG 480 consensus_6902#1 ------------------------------------------------------------ consensus_6902#0 GTGTACGTACCGAAATCTCAACAGGAGACAATAAAAACATACGAAAAAATACAATTTGAA 540 consensus_6902#1 ------------------------------------------------------------ consensus_6902#0 GACTCCTCTCTGCGGTTTCCGGCGCCGAAGCAGAATGAGCAACAGCAACCTCAGCCTCAA 600 consensus_6902#1 ------------------------------------------------------------ consensus_6902#0 CCGCCAAAAACGCCCGGAGCGATGCAGTTCGCCTGGAACATGATGAAGATGATGGTATTA 660 consensus_6902#1 --------------------------------------CAAGAATCGGCCCGAGGTATTA 22 ** ** * ******* consensus_6902#0 CCCCGACAGGACAACACAGTCATCTGTCCAATACTGCCACAAACCCTTCTGGCGACCCTG 720 consensus_6902#1 CCC-GACAGGACAACACAGTCATCTGTCCAATACTGCCACAAACCCTTCTGGCGACCCTG 81 *** ******************************************************** consensus_6902#0 CACGATGGGGCCGATCGTGCTGCTCAAGCCGAGCTAAGCTCCTCATTACTTGCCACCTCG 780 consensus_6902#1 CACGATGGGGCCGATCGTGCTGCTCAAGCCGAGCTAAGCTCCTCATTACTTGCCACCTCG 141 ************************************************************ consensus_6902#0 CAGGAACTAGGACAGATCGTGCGCAGTCAAGAGCTCGCCATTCGAGGGTCGAGTGTAAAC 840 consensus_6902#1 CAGGAACTAGGACAGATCGTGCGCAGTCAAGAGCTCGCCATTCGAGGGTCGAGTGTAAAC 201 ************************************************************ consensus_6902#0 AGGCTCGATCAGGCGATGGCCGTCTTTCTCGGAACGGATACGAAAATCAGCAAACCCATC 900 consensus_6902#1 AGGCTCGATCAGGCGATGGCCGTCTTTCTCGGAACGGATACGAAAATCAGCAAACCCATC 261 ************************************************************ consensus_6902#0 CAGGATAAAGCAC----------------------------------------------- 913 consensus_6902#1 CAGGATAAAGCACTCCAGAATGGGGTAGAGTTTGTGCCGGTGAATTTCCTCAATCGCAAC 321 ************* consensus_6902#0 ------------------------------------------------------------ consensus_6902#1 ACCGCTGCCGCTACTGCCAATGATTGGGTGGCGCGAAAATCGCAAGGCCTTATCCGTGAA 381 consensus_6902#0 ------------------------------------------------------------ consensus_6902#1 ATCGTTGCACCCAGTAAGTCTTGCTAATTACTCACAAAGAAAACCAAAAACTAATTCGAG 441 consensus_6902#0 ------------------------------------------------------------ consensus_6902#1 TCTTGTTTGCAATAATTTCAGCTGCGTCTCGACGCCTCAAGCACGTCTACTTATGGCGAG 501 consensus_6902#0 ----------- consensus_6902#1 CGTGATCTATT 512 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||