These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6905#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1254 fasta sequence [CCGCATGGATTCGTGCCAAAAAAGTCGACTACCACGAACCTGGTTGAATTTGTAACCTATTGCACTAGTCAAATTGATGCCGGAGCTCAAGTCGATGCAATTTATACAGATCTAAAAGCAGCATTCGACTCTCTTCCGCACGCAATTCTTCTCGCTAAACTCGATAAGCTAGGAGTTCCCAGCCCGCTCGTACAGTGGCTTAAGTCCTATCTAATAAATCGCACATACATCGTTAAAATTGAAAAGCACATGTCCAAAGAAATAGTCAGCAGCTCGGGTGTGCCACAAGGAAGCAACATTGGCCCGCTTCTCTTCATATTGTTTATCAACGATGTTACCCTCGCTTTACCTTCCGACAGTATCAGTCTGTTTGCCGACGACGCAAAAATTTTTGCGCCTATTCACAACACAGGTGATTGTACATTCCTGCAAGACTGCATCGAAATTTTCTGTTCGTGGTGCAAGCGTAATGGACTGACTATCTGCATCGAGAAATGCTACTGTGTGTCTTTTAGTCGATGCAGGAGCCCAGTGACTGGGACCTACTTCATGGACGGCACTGCAGTTAATCGACAGAAACATGCCAAAGACCTGGGCGTTCTGCTTGACTCTAGTTTGAACTTTAAACAGCATATCGATAACGTTGTAGCCAGAGGAAATTAATTACTTGGCGTGGTTATCCGGACAACTAATGAATTCCGCAACCAACCATGTGCATCAAATCTGTCTACATCTGTATC-GTTCGTTCGGTTCTGGAATATTCGTGCGTAGTCTGGAGCCCAACTACTGCTTCTTCAATTGCTCGACTTGAGGCGATTCAACGTAAACTCACGCGATACGCCCTACACCTACTTCCCTGACAGGATCGCAATAATCTTCCTCCGTATGCTGCGCGGTGCCGTCTTCTAGGCCTTGAACCTCTTTCGGTTAGAAGACGCAATGCACAGTGTTCTTTCATCGCTGGATTGCTAAATGGCTCTATCGACTCATCGCCTTTGTTGCATCGAGTCGATATCTATCCGTTCCAGCGCTGGTCGGTCTGACCCTATGTTCCGCATGTCGGCTGTCTTCAATACTGTCTCGGATTGCTTCGACTTCGACATCTCGACTCAGTGCTTCAAGGAACGTCTCCGGCTTTTGCCGTGGCCGCAGTGAATTGCGATGCAAATCTTGGTTTTGTTATGTTTTTTTTTAATGAACTGTTACATCTTAATTAGGCCATACGGCCCGTTGAAGATTAAATAAATAATAATA] [+] EMBL BM656482 [CCGCATGGATTCGTGCCAAAAAAGTCGACTACCACGAACCTGGTTGAATTTGTAACCTATTGCACTAGTCAAATTGATGCCGGAGCTCAAGTCGATGCAATTTATACAGATCTAAAAGCAGCATTCGACTCTCTTCCGCACGCAATTCTTCTCGCTAAACTCGATAAGCTAGGAGTTCCCAGCCCGCTCGTACAGTGGCTTAAGTCCTATCTAATAAATCGCACATACATCGTTAAAATTGAAAAGCACATGTCCAAAGAAATAGTCAGCAGCTCGGGTGTGCCACAAGGAAGCAACATTGGCCCGCTTCTCTTCATATTGTTTATCAACGATGTTACCCTCGCTTTACCTTCCGACAGTATCAGTCTGTTTGCCGACGACGCAAAAATTTTTGCGCCTATTCACAACACAGGTGATTGTACATTCCTGCAAGACTGCATCGAAATTTTCTGTTCGTGGTGCAAGCGTAATGGACTGACTATCTGCATCGAGAAATGCTACTGTGTGTCTTTTAGTCGATGCAGGAGCCCAGTGACTGGGACCTACTTCATGGACGGCACTGCAGTTAATCGACAGAAACATGCCAAAGACCTGGGCGTTCTGCTTGACTCTAGTTTGAACTTTAAACAGCATATCGATGACGTTGTAGCCAGAGGAAATCAATTACTTGGCGTGGTTAT ] [+] EMBL BM599890 [ ccgCGGAGCTCAAGTCGATGCAATTTATACCGATCTAAAAGCAGCATTCGACTCTCTTCCGCACGCAATTCTTCTCGCTAAACTCGATAAGCTAGGAGTTCCCAGCCCGCTCGTACAGTGGCTTAAGTCGTACCTAATTAATCGCACATACATCGTGAAAATTGATAAGCACATGTCCAAAGAAATAGTCAGCAGCTCGGGTGTGCCACAAGGAAGCAACATTGGCCCGCTTCTCTTCATATTGTTTATCAACGATGTTACCCTCGCTTTACCTCCCGACAGTATCAGTCTGTTTGCCGACGACGCAAAAATTTTTGCGCCTATTAACAACACAGGTGATTGTACATTCCTGCAAGACTGCATCGAAATTTTCTGTTCGTGGTGCAAGCGTAATGGACTGACTATCTGCATCGAGAAATGCTACTGTGTGTCTTTTAGTCGATGCAGGAGCCCAGTGACTGGGACCTACTTCATGGACGGCACTGCAGTTAATCGACAGAATCATGCCAAAGACCTGGGCGTTCTGCTTGACTCTAGTTTGAACTTTAAACAGCATATCGATGACGTTGTAGCCAGAGGAAATCAATTACTTGGCGTGGTTATCCGGACAACTAATGAATTCCGCAACC CCATGTGCATCAAAGCTGTGTACAACTGTATCAGTTCGTTCGGTTCTGGAATATTC ] [+] EMBL BX614189 [ TCTGCTTGACTCTAGTTTGAACTTTAAACAGCATATCGATAACGTTGTAGCCAGAGGAAATTAATTACTTGGCGTGGTTATCCGGACAACTAATGCATTCCGCAACCAACCATGTGCATCAAATCTGTCTACATCTGTATC GTTCGTTCGGTTCTGGAATATTCGTGCGTAGTCTGGAGCCCAACTACTGCTTCTTCAATTGCTCGACTTGAGGCGATTCAACGTAAACTCACGCGATACGCCCTACACCTACTTCCCTGACAGGATCGCAATAATCTTCCTCCGTATGCTGCGCGGTGCCGTCTTCTAGGCCTTGAACCTCTTTCGGTTAGAAGACGCAATGCACAGTGTTCTTTCATCGCTGGATTGCTAAATGGCTCTATCGACTCATCGCCTTTGTTGCATCGAGTCGATATCTATCCGTTCCAGCGCTGGTCGGTCTGACCCTATGTTCCGCATGTCGGCTGTCTTCAATACTGT ] [+] EMBL BX611826 [ ACTCTAGTGTGAACTTTAAACAGCATATCGATAACGTTGTAGCCAGAGGAAATTAATTACTTGGCGTGGTTATCCGGACAACTAATGAATTCCGCAACCAACCATGTGCATCAAATCTGTCTACATCTGTATC GTTCGTTCGGTTCTGGAATATTCGTGCGTAGTCTGGAGCCCAACTACTGCTTCTTCAATTGCTCGACTTGAGGCGATTCAACGTAAACTCACGCGATACGCCCTACACCTACTTCCCTGACAGGATCGCAATAATCTTCCTCCGTATGCTGCGCGGTGCCGTCTTCTAGGCCTTGAACCTCTTTCGGTTAGAAGACGCAATGCACAGTGTTCTTTCATCGCTGGATTGCTAAATGGCTCTATCGACTCATCGCCTTTGTTGCATCGAGTCGATATCTATCCGTTCCAGCGCTGGTCGGTCTGACCCTATGTTCCGCATGTCGGCTGTCTTCAATACTGTCTCGGATTGCTTCGACTTCGACATCTCGACTCAGTGCTTCAAGGAACGTCTCCGGCTTTTGCCGTGGCCGCAGTGAATTGCGATGCAAATCTTGGTTTTGTTATGTTTTTTTTTAATGAACTGTTACATCTTAATTAGGCCATACGGCCCGTTGAAGATTAAATAAATAATAATA] [+] EMBL BX612031 [ ACTCTAGTTTGAACTTTAAACAGCATATCGATAACGTTGTAGCCAGAGGAAATTAATTACTTGGCGTGGTTATCCGGACAACTAATGAATTCCGCAACCAACCATGTGCATCAAATCTGTCTACATCTGTATC GTTCGTTCGGTTCTGGAATATTCGTGCGTAGTCTGGAGCCCAACTACTGCTTCTTCAATTGCTCGACTTGAGGCGATTCAACGTAAACTCACGCGATACGCCCTACACCTACTTCCCTGACAGGATCGCAATAATCTTCCTCCGTATGCTGCGCGGTGCCGTCTTCTAGGCCTTGAACCTCTTTCGGTTAGAAGACGCAATGCACAGTGTTCTTTCATCGCTGGATTGCTAAATGGCTCTATCGACTCATCGCCTTTGTTGCATCGAGTCGATATCTATCCGTTCCAGCGCTGGTCGGTCTGACCCTATGTTCCGCATGTCGGCTGTCTTCAATACTGTCTCGGATTGCTTCGACTTCGACATCTCGACTCAGTGCTTCAAGGAACGTCTCCGGCTTTTGCCGTGGCCGCAGTGAATTGCGATGCAAATCTTGGTTTTGTTATGTTTTTTTTTAATGAACTGTTACATCTTAATTAGGCCATACGGCCCGTTGAAGATTAA ] consensusID : consensus_6905#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [GTTAGTGGGGTAGCCACCCAGTGGAGCGTTCCTCGTTTTGATAGCTTTATGCTTCCCTCTGTACTGCTATATCGACTTCATGGACGGCACTGCAGTTAATCGACAAAATCATGCCAAAGACCTGGGCGTTCTGCTTGACTCAATTACTTGGCGTGGTTATCCGGACAACTAATGAATTCCGCAACCCCATGTGCATCAAAGCTATCTACAACTGTATCGTTCGTTCGGTTCTGGAATATTCGTGCGTAGTCTGGAGCCCAACTACTGCTTCTTCAATTGCTCGACTTGAGGCGATTCAACGTAATCTCACGCGATATGCCCTACGTTTACTTTCCTGGCAGGATCGCAATAATCTTCCTCCGTATGCTGCGCGGTGCCGTCTTCTAGGCCTTGAACCTCTTTCGGTTAGAAGACGCAATGCACAGTGTTCTTTCATCGCTGGATTGCTAAATGGCTCTATCGACTCATCGCCTTTGTTGCATGGAGTCGACATCTATGCACCATCTCGAACACTTAGGTGTAGAGAAACTCGACGGCTCGCTCAACCCCGTTCCAGCGCTGGTCGGTCTGACCCTATGTTCCGCATGTCGGCTGTCTTCAATACTGTCTCGGACTGCTTCGATTTCGACATCTCGACTCAGTGCTTCAAAGAACGTCTCCGGCTTTTGCCGTGGCCGCAGTGAA] [-] EMBL BX627466 [GTTAGTGGGGTAGCCACCCAGTGGAGCGTTCCTCGTTTTGATAGCTTTATGCTTCCCTCTGTACTGCTATATCGACTTCATGGACGGCACTGCAGTTAATCGACAAAATCATGCCAAAGACCTGGGCGTTCTGCTTGACTCAATTACTTGGCGTGGTTATCCGGACAACTAATGAATTCCGCAACCCCATGTGCATCAAAGCTATCTACAACTGTATCGTTCGTTCGGTTCTGGAATATTCGTGCGTAGTCTGGAGCCCAACTACTGCTTCTTCAATTGCTCGACTTGAGGCGATTCAACGTAATCTCACGCGATATGCCCTACGTTTACTTTCCTGGCAGGATCGCAATAATCTTCCTCCGTATGCTGCGCGGTGCCGTCTTCTAGGCCTTGAACCTCTTTCGGTTAGAAGACGCAATGCACAGTGTTCTTTCATCGCTGGATTGCTAAATGGCTCTATCGACTCATCGCCTTTGTTGCATGGAGTCGACATCTATGCACCATCTCGAACACTTAGGTGTAGAGAAACTCGACGGCTCGCTCAACCCCGTTCCAGCGCTGGTCGGTCTGACCCTATGTTCCGCATGTCGGCTGTCTTCAATACTGTCTCGGACTGCTTCGATTTCGACATCTCGACTCAGTGCTTCAAAGAACGTCTCCGGCTTTTGCCGTGGCCGCAGTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6905#0 CCGCATGGATTCGTGCCAAAAAAGTCGACTACCACGAACCTGGTTGAATTTGTAACCTAT 60 consensus_6905#1 ------------------------------------------------------------ consensus_6905#0 TGCACTAGTCAAATTGATGCCGGAGCTCAAGTCGATGCAATTTATACAGATCTAAAAGCA 120 consensus_6905#1 ------------------------------------------------------------ consensus_6905#0 GCATTCGACTCTCTTCCGCACGCAATTCTTCTCGCTAAACTCGATAAGCTAGGAGTTCCC 180 consensus_6905#1 ------------------------------------------------------------ consensus_6905#0 AGCCCGCTCGTACAGTGGCTTAAGTCCTATCTAATAAATCGCACATACATCGTTAAAATT 240 consensus_6905#1 ------------------------------------------------------------ consensus_6905#0 GAAAAGCACATGTCCAAAGAAATAGTCAGCAGCTCGGGTGTGCCACAAGGAAGCAACATT 300 consensus_6905#1 ------------------------------------------------------------ consensus_6905#0 GGCCCGCTTCTCTTCATATTGTTTATCAACGATGTTACCCTCGCTTTACCTTCCGACAGT 360 consensus_6905#1 ------------------------------------------------------------ consensus_6905#0 ATCAGTCTGTTTGCCGACGACGCAAAAATTTTTGCGCCTATTCACAACACAGGTGATTGT 420 consensus_6905#1 ------------------------------------------------------------ consensus_6905#0 ACATTCCTGCAAGACTGCATCGAAATTTTCTGTTCGTGGTGCAAGCGTAATGGACTGACT 480 consensus_6905#1 ---------------------------------------------GTTAGTGGGGTAGCC 15 ** *** * * consensus_6905#0 ATCTGCATCGAGAAATGCTACTGTGTGTCTTTTAGTCGATGCAGGAGCCCAGTGACTGGG 540 consensus_6905#1 ACCCA----GTGGAGCGTTCCT-CGTTTTGATAGCTTTATGCTTCCCTCTGTACTGCTAT 70 * * * * * * * ** ** * * * **** * consensus_6905#0 ACCTACTTCATGGACGGCACTGCAGTTAATCGACAGAAACATGCCAAAGACCTGGGCGTT 600 consensus_6905#1 ATCGACTTCATGGACGGCACTGCAGTTAATCGACAAAATCATGCCAAAGACCTGGGCGTT 130 * * ******************************* ** ********************* consensus_6905#0 CTGCTTGACTCTAGTTTGAACTTTAAACAGCATATCGATAACGTTGTAGCCAGAGGAAAT 660 consensus_6905#1 CTGCTTGACTC------------------------------------------------- 141 *********** consensus_6905#0 TAATTACTTGGCGTGGTTATCCGGACAACTAATGAATTCCGCAACCAACCATGTGCATCA 720 consensus_6905#1 -AATTACTTGGCGTGGTTATCCGGACAACTAATGAATTCCGCAACC--CCATGTGCATCA 198 ********************************************* ************ consensus_6905#0 AATCTGTCTACATCTGTATCGTTCGTTCGGTTCTGGAATATTCGTGCGTAGTCTGGAGCC 780 consensus_6905#1 AAGCTATCTACAACTGTATCGTTCGTTCGGTTCTGGAATATTCGTGCGTAGTCTGGAGCC 258 ** ** ****** *********************************************** consensus_6905#0 CAACTACTGCTTCTTCAATTGCTCGACTTGAGGCGATTCAACGTAAACTCACGCGATACG 840 consensus_6905#1 CAACTACTGCTTCTTCAATTGCTCGACTTGAGGCGATTCAACGTAATCTCACGCGATATG 318 ********************************************** *********** * consensus_6905#0 CCCTACACCTACTTCCCTGACAGGATCGCAATAATCTTCCTCCGTATGCTGCGCGGTGCC 900 consensus_6905#1 CCCTACGTTTACTTTCCTGGCAGGATCGCAATAATCTTCCTCCGTATGCTGCGCGGTGCC 378 ****** ***** **** **************************************** consensus_6905#0 GTCTTCTAGGCCTTGAACCTCTTTCGGTTAGAAGACGCAATGCACAGTGTTCTTTCATCG 960 consensus_6905#1 GTCTTCTAGGCCTTGAACCTCTTTCGGTTAGAAGACGCAATGCACAGTGTTCTTTCATCG 438 ************************************************************ consensus_6905#0 CTGGATTGCTAAATGGCTCTATCGACTCATCGCCTTTGTTGCATCGAGTCGATATCTAT- 1019 consensus_6905#1 CTGGATTGCTAAATGGCTCTATCGACTCATCGCCTTTGTTGCATGGAGTCGACATCTATG 498 ******************************************** ******* ****** consensus_6905#0 -------------------------------------------------CCGTTCCAGCG 1030 consensus_6905#1 CACCATCTCGAACACTTAGGTGTAGAGAAACTCGACGGCTCGCTCAACCCCGTTCCAGCG 558 *********** consensus_6905#0 CTGGTCGGTCTGACCCTATGTTCCGCATGTCGGCTGTCTTCAATACTGTCTCGGATTGCT 1090 consensus_6905#1 CTGGTCGGTCTGACCCTATGTTCCGCATGTCGGCTGTCTTCAATACTGTCTCGGACTGCT 618 ******************************************************* **** consensus_6905#0 TCGACTTCGACATCTCGACTCAGTGCTTCAAGGAACGTCTCCGGCTTTTGCCGTGGCCGC 1150 consensus_6905#1 TCGATTTCGACATCTCGACTCAGTGCTTCAAAGAACGTCTCCGGCTTTTGCCGTGGCCGC 678 **** ************************** **************************** consensus_6905#0 AGTGAATTGCGATGCAAATCTTGGTTTTGTTATGTTTTTTTTTAATGAACTGTTACATCT 1210 consensus_6905#1 AGTGAA------------------------------------------------------ 684 ****** consensus_6905#0 TAATTAGGCCATACGGCCCGTTGAAGATTAAATAAATAATAATA 1254 consensus_6905#1 -------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||