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Anopheles gambiae
cluster # 6919 cluster # 6919       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6919#0 length = 1478 sequences # 5  
consensus_6919#1 length = 536 sequences # 1  

consensusID : consensus_6919#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1478
fasta sequence
                              [CCGCGGACGCGTGGGCGATATTACGAACTCATCCATCGAGGCCATCGTATTTTAGCTGTAAGAATGTAAACGCCCTTCTTCCCATCTCCCAATGAATACGCGAATGTACCAACACACACAAACAAACACACATACATACACAACGTAATGGAAGCAGCTCTCGAAACCGAAACCAAAAAGAGGAAGTAAAAAAACAAGCTCGATCAAATCGATGGGTGTCTGCGAGATCGCCCACAAGCAAGGCTAGCTTTTCGAATAGAAGAAAACCCGTAGTATGTTAAGGCGTTACTAAGTGTCGTGTGCGGTTCGGGTTTTGTGCCATTGGAACGGCTCTATCTTTTTACACTACTGGTGTTGAGTGCTGGGCTTGGGGTGGGGAGGGCATGGAAGGGGGATACGAAAATGTGTGTGTGTGTGTGTTTTGGTCTAGTTAATGCCAATAGGCTGAAAGGTACCCCGAACGTCGGTGTTTGTGTTGTGTACGTTGAATTTGCTAGTTTTAGTCACGAGAGCATCGTCGCATTCAAAACCACCGAAATCGTATGTGGACAGAAGAGCGCATAGAGATCCTCAACAATTTGTTTTTCATTAAAGTCTTTATGATTTATTTTCCAATTAGCTCCAATCATTCCCCATCCCATTAAAACAAACACACACACATAAAGGCACTGGCGTATCGATAGCTCGATCGTTTACCGAATTTGTCGAATACGAATACAGTTCGAAAACGGATGTGCTGTGGCCGGTACAAAGTACAAACCCCTCCTCTCCAGGAA--ACACACACACACACTAAAAGCGCCCTGCTGTGCATTACATGACAAGGCATCCGATTGCATCCCATGCCTGACTTCCCCCGAACCCGGCAAATTCGATGTGATAAGTTCAACACAACATTTAACTGTATTAAGCTCTGCGCGGG-AAAGGATGGGGCTGACGGAAGCGCTCTCGTCACACACACACACTTACAACTAGAGACAACTGGTCAGTTTAAATTTCCCACACAAGCAATAGACAGTGGTGAGAATGTGATGCGTTGCGTTGTTTCTGTGTGTATCCCAACCACCCTCCAGAACAAGGTAAACACAACAAAAAAAACACCCCAAACTGTTGCAGTATAGTAGAACTCTTACGTGCCTATAGTCTGTTAACAACTCGAACCGAACGCAACGCGCGGACATGGAAAACAAAAGTATTTGAATGAAAGATATAAAGAAGGGAGGAAAAACAAAGAAGAGCAGTGCAACAAAAAAAGAAGTACGAAATACACCGTAACACAACACAACACACACACCTAAATACGCAGAGCTAATATTTCCAAAACACGATACCAAAACAGAAAGACTTTGCCAACAAAAACAAAAAACAAAAACTGGCGGAAAAGCGAAGATGCAAACGAAACAAGGCGAATTAGGTAAACCCCGTGGAGGTGTTGACTAATGTCTCCCTCCACACCAACCAGCGGATGCCAGCCTATTGAT]

[+] EMBL BM613648             [CCGCGGACGCGTGGGCGATATTACGAACTCATCCATCGAGGCCATCGTATTTTAGCTGTAAGAATGTAAACGCCCTTCTTCCCATCTCCCAATGAATACGCGAATGTACCAACACACACAAACAAACACACATACATACACAACGTAATGGAAGCAGCTCTCGAAACCGAAACCAAAAAGAGGAAGTAAAAAAACAAGCTCGATCAAATCGATGGGTGTCTGCGAGATCGCCCACAAGCAAGGCTAGCTTTTCGAATAGAAGAAAACCCGTAGTATGTTAAGGCGTTACTAAGTGTCGTGTGCGGTTCGGGTTTTGTGCCATTGGAACGGCTCTATCTTTTTACACTACTGGTGTTGAGTGCTGGGCTTGGGGTGGGGAGGGCATGGAAGGGGGATACGAAAATGTGTGTGTGTGTGTGTTTTGGTCTAGTTAATGCCAATAGGCTGAAAGGTACCCCGAACGTCGGTGTTTGTGTTGTGTACGTTGAATTTGCTAGTTTTAGTCACGAGAGCATCGTCGCATTCAAAACCACCGAAATCGTATGTGGACAGAAGAGCGCATAGAGATCCTCAACAATTTGTTTTTCATTAAAGTCTTTATGATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM632939             [                                                                                                        ccgggaAACACACACAAACAAACACACATACATACACAACGTAATGGAAGCAGCTCTCGAAACCGAAACCAAAAAGAGGAAGTAAAAAAACAAGCTCGATCAAATCGATGGGTGTCTGCGAGATCGCCCACAAGCAAGGCTAGCTTTTCGAATAGAAGAAAACCCGTAGTATGTTAAGGCGTTACTAAGTGTCGTGTGCGGTTCGGGTTTTGTGCCATTGGAACGGCTCTATCTTTTTACACTACTGGTGTTGAGTGCTGGGCTTGGGGTGGGGAGGGCATGGAAGGGGGATACGAAAATGTGTGTGTGTGTGTGTTTTGGTCTAGTTAATGCCAATAGGCTGAAAGGTACCCCGAACGTCGGTGTTTGTGTTGTGTACGTTGAATTTGCTAGTTTTAGTCACGAGAGCATCGTCGCATTCAAAACCACCGAAATCGTATGTGGACAGAAGAGCGCATAGAGATCCTCAACAATTTGTTTTTCATTAAAGTCTTTATGATTTATTTTCCAATTAGCTCCAATCATTCCCCATCCCATTAAAACAAACACACACACATAAAGGCACTGGCGTATCGATAGCTCGATCGTTTACCGAATTTGTCGAATACGAATACAGTTCGAAAACGGATGTGCTGTGGCCGGTACAAAGTACAAACCCCTCCTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM624662             [                                                                                                                                                                                                                                                                                                         ccGTGCGGTTCGGGTTTTGTGCCATTGGAACGGCTCTATCTTTTTACACTACTGGTGTTGAGTGCTGGGCTTGGGGTGGGGAGGGCATGGAAGGGGGATACGAAAATGTGTGTGTGTGTGTGTTTTGGTCTAGTTAATGCCAATAGGCTGAAAGGTACCCCGAACGTCGGTGTTTGTGTTGTGTACGTTGAATTTGCTAGTTTTAGTCACGAGAGCATCGTCGCATTCAAAACCACCGAAATCGTATGTGGACAGAAGAGCGCATAGAGATCCTCAACAATTTGTTTTTCATTAAAGTCTTTATGATTTATTTTCCAATTAGCTCCAATCATTCCCCATCCCATTAAAACAAACACACACACATAAAGGCACTGGCGTATCGATAGCTCGATCGTTTACCGAATTTGTCGAATACGAATACAGTTCGAAAACGGATGTGCTGTGGCCGGTACAAAGTACAAACCCCTCCTCTCCAGGAA  ACACACACACACACTAAAAGCGCCCTGCTGTGCATTACATGACAAGGCATCCGATTGCATCCCATGCCTGACTTCCCCCGAACCCGGCAAATTCGATGTGATAAGTTCAACACAACATTTAACTGTATTAAGCTCTGCGCGGGAAAAGGATGGGGCTGACGGAAGCGCTCTCGTCACACACAact                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BX627778             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TTCCAATTAGCTCCAATCATTCCCCATCCCATGAAAACAAATACACACACATAAAGGCACTGGCGTATCGATAGCTCGATCGTTTACCGAATTTGTCGAATACGAATACAGTTCGAAAACGGATGTGCTGTGGCCGGTACAAAGTACAAACCCCTCCTCTCCAGGAAACACACACACACACACTAAAAGCGCCCTGCTGTGCATTACATGACAAGGCATCCGATTGCATCCCATGCCTGACTTCCCCCGAACCCGGTAAATTCGATGTGATAAGTTCAACACAACATTTAACTGTATTAAGCTCTGCGCGGG AGAGGATGGAGATGACGGAAGCGCTCTCGTCACACACACACACTTACAACTAGAGACAACTGGTCAGTTTAAATTTCCCACACAAGCAATAGACAGTGGTGAGAATGTGATGCGTTGCGTTGTTTCTGTGTGTATCCCAACCACCCTCCAGAACAAGGTAAACACAACAAAAAAAACACCCCAAACTGTTGCAGTATAGTAGAACTCTTACGTGCCTATAGTCTGTTAACAACTCGAACCGAACGCAACGCGCGGACATGGAAAACAAAAGTATTTGAATGAAAGATATAAAGAAGGGAGGAAAAACAAAGAAGAGCAGTGCAACAAAAAAAGAAGTACGAAATACACCGTAACACAACACAACACACACACCTAAATACGCAGAGCTAATATTTCCAAAACACGATA                                                                                                                                                       ]
[+] EMBL BX611010             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCTCTCGTCACACACACACACTTACAACTAGAGACAACTGGTCAGTTTAAATTTCCCACACAAGCAATAGACAGTGGTGAGAATGTGATGCGTTGCTTTGTTTCGGTGTGTATCCCAACCCCCCTCCCGAACAAGGTAAACAAAAC AAAAAAACACCCCAAACTGTTGCAGTATAGTAGAACTCTTACGTGCCTATAGTCTGTTAACAACTCGAACCGAACGCAACGCGCGGACATGGAAAACAAAAGTATTTGAGTGAAAGATATAAAAAAGGAAGGAAAAACAAAGAAGAGCAGTGCAACAAAACAAGAAGTACGAAATACACCGTAACACAACAC ACACACACACCTAAATACGCAGAGCTAATATTTCCAAAACACGATACCAAAACAGAAAGACTTTGCCAACAAAAACAAAAAACAAAAACTGGCGGAAAAGCGAAGATGCAAACGAAACAAGGCGAATTAGGTAAACCCCGTGGAGGTGTTGACTAATGTCTCCCTCCACACCAACCAGCGGATGCCAGCCTATTGAT]


>consensus_6919#0 CCGCGGACGCGTGGGCGATATTACGAACTCATCCATCGAGGCCATCGTATTTTAGCTGTA AGAATGTAAACGCCCTTCTTCCCATCTCCCAATGAATACGCGAATGTACCAACACACACA AACAAACACACATACATACACAACGTAATGGAAGCAGCTCTCGAAACCGAAACCAAAAAG AGGAAGTAAAAAAACAAGCTCGATCAAATCGATGGGTGTCTGCGAGATCGCCCACAAGCA AGGCTAGCTTTTCGAATAGAAGAAAACCCGTAGTATGTTAAGGCGTTACTAAGTGTCGTG TGCGGTTCGGGTTTTGTGCCATTGGAACGGCTCTATCTTTTTACACTACTGGTGTTGAGT GCTGGGCTTGGGGTGGGGAGGGCATGGAAGGGGGATACGAAAATGTGTGTGTGTGTGTGT TTTGGTCTAGTTAATGCCAATAGGCTGAAAGGTACCCCGAACGTCGGTGTTTGTGTTGTG TACGTTGAATTTGCTAGTTTTAGTCACGAGAGCATCGTCGCATTCAAAACCACCGAAATC GTATGTGGACAGAAGAGCGCATAGAGATCCTCAACAATTTGTTTTTCATTAAAGTCTTTA TGATTTATTTTCCAATTAGCTCCAATCATTCCCCATCCCATTAAAACAAACACACACACA TAAAGGCACTGGCGTATCGATAGCTCGATCGTTTACCGAATTTGTCGAATACGAATACAG TTCGAAAACGGATGTGCTGTGGCCGGTACAAAGTACAAACCCCTCCTCTCCAGGAAACAC ACACACACACTAAAAGCGCCCTGCTGTGCATTACATGACAAGGCATCCGATTGCATCCCA TGCCTGACTTCCCCCGAACCCGGCAAATTCGATGTGATAAGTTCAACACAACATTTAACT GTATTAAGCTCTGCGCGGGAAAGGATGGGGCTGACGGAAGCGCTCTCGTCACACACACAC ACTTACAACTAGAGACAACTGGTCAGTTTAAATTTCCCACACAAGCAATAGACAGTGGTG AGAATGTGATGCGTTGCGTTGTTTCTGTGTGTATCCCAACCACCCTCCAGAACAAGGTAA ACACAACAAAAAAAACACCCCAAACTGTTGCAGTATAGTAGAACTCTTACGTGCCTATAG TCTGTTAACAACTCGAACCGAACGCAACGCGCGGACATGGAAAACAAAAGTATTTGAATG AAAGATATAAAGAAGGGAGGAAAAACAAAGAAGAGCAGTGCAACAAAAAAAGAAGTACGA AATACACCGTAACACAACACAACACACACACCTAAATACGCAGAGCTAATATTTCCAAAA CACGATACCAAAACAGAAAGACTTTGCCAACAAAAACAAAAAACAAAAACTGGCGGAAAA GCGAAGATGCAAACGAAACAAGGCGAATTAGGTAAACCCCGTGGAGGTGTTGACTAATGT CTCCCTCCACACCAACCAGCGGATGCCAGCCTATTGAT



consensusID : consensus_6919#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 536
fasta sequence
                              [GTCTGGGAGATCGCCCACAAGCAAGGCTAGCTTTTCGAATAGAAGAAAACCCGTAGTATGTTAAGGCGTTACTAAGTGTCGTGTGCGGTTCGGGTTTTGTGCCATTGGAACGGCTCTATCTTTTTACACTAAAAGCGCCCTGCTGTGCATTACATGACAAGGCATCCGATTGCATCCCATGCCTGACTTCCCCCGAACCCGGTAAATTCGATGTGATAAGTTCAACACAACATTTAACTGTATTAAGCTCTGCGAGGGAGAGGATGGAGATGACGGAAGCGCTCTCGTCACACACACACACTTACAACTAGAGACAACTGGTCAGTTTAAATTTCCCACACAAGCAATAGACAGTGGTGAGAATGTGATGCGTTGCTTTGTTTCGGTGTGTATCCCAACCCCCCTCCCGAACAAGGTAAACAAAACAAAAAAACACCCCAAACTGTTGCAGTATAGTAGAACTCTTACGTGCCTATAGTCTGTTAACAACTCGAACCGAACGCAACGCGCGGACATGGAAAACAAAAGTATTTGAG]

[+] EMBL BX612673             [GTCTGGGAGATCGCCCACAAGCAAGGCTAGCTTTTCGAATAGAAGAAAACCCGTAGTATGTTAAGGCGTTACTAAGTGTCGTGTGCGGTTCGGGTTTTGTGCCATTGGAACGGCTCTATCTTTTTACACTAAAAGCGCCCTGCTGTGCATTACATGACAAGGCATCCGATTGCATCCCATGCCTGACTTCCCCCGAACCCGGTAAATTCGATGTGATAAGTTCAACACAACATTTAACTGTATTAAGCTCTGCGAGGGAGAGGATGGAGATGACGGAAGCGCTCTCGTCACACACACACACTTACAACTAGAGACAACTGGTCAGTTTAAATTTCCCACACAAGCAATAGACAGTGGTGAGAATGTGATGCGTTGCTTTGTTTCGGTGTGTATCCCAACCCCCCTCCCGAACAAGGTAAACAAAACAAAAAAACACCCCAAACTGTTGCAGTATAGTAGAACTCTTACGTGCCTATAGTCTGTTAACAACTCGAACCGAACGCAACGCGCGGACATGGAAAACAAAAGTATTTGAG]


>consensus_6919#1 GTCTGGGAGATCGCCCACAAGCAAGGCTAGCTTTTCGAATAGAAGAAAACCCGTAGTATG TTAAGGCGTTACTAAGTGTCGTGTGCGGTTCGGGTTTTGTGCCATTGGAACGGCTCTATC TTTTTACACTAAAAGCGCCCTGCTGTGCATTACATGACAAGGCATCCGATTGCATCCCAT GCCTGACTTCCCCCGAACCCGGTAAATTCGATGTGATAAGTTCAACACAACATTTAACTG TATTAAGCTCTGCGAGGGAGAGGATGGAGATGACGGAAGCGCTCTCGTCACACACACACA CTTACAACTAGAGACAACTGGTCAGTTTAAATTTCCCACACAAGCAATAGACAGTGGTGA GAATGTGATGCGTTGCTTTGTTTCGGTGTGTATCCCAACCCCCCTCCCGAACAAGGTAAA CAAAACAAAAAAACACCCCAAACTGTTGCAGTATAGTAGAACTCTTACGTGCCTATAGTC TGTTAACAACTCGAACCGAACGCAACGCGCGGACATGGAAAACAAAAGTATTTGAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6919#0      CCGCGGACGCGTGGGCGATATTACGAACTCATCCATCGAGGCCATCGTATTTTAGCTGTA 60
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      AGAATGTAAACGCCCTTCTTCCCATCTCCCAATGAATACGCGAATGTACCAACACACACA 120
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      AACAAACACACATACATACACAACGTAATGGAAGCAGCTCTCGAAACCGAAACCAAAAAG 180
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      AGGAAGTAAAAAAACAAGCTCGATCAAATCGATGGGTGTCTGCGAGATCGCCCACAAGCA 240
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      AGGCTAGCTTTTCGAATAGAAGAAAACCCGTAGTATGTTAAGGCGTTACTAAGTGTCGTG 300
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      TGCGGTTCGGGTTTTGTGCCATTGGAACGGCTCTATCTTTTTACACTACTGGTGTTGAGT 360
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      GCTGGGCTTGGGGTGGGGAGGGCATGGAAGGGGGATACGAAAATGTGTGTGTGTGTGTGT 420
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      TTTGGTCTAGTTAATGCCAATAGGCTGAAAGGTACCCCGAACGTCGGTGTTTGTGTTGTG 480
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      TACGTTGAATTTGCTAGTTTTAGTCACGAGAGCATCGTCGCATTCAAAACCACCGAAATC 540
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      GTATGTGGACAGAAGAGCGCATAGAGATCCTCAACAATTTGTTTTTCATTAAAGTCTTTA 600
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      TGATTTATTTTCCAATTAGCTCCAATCATTCCCCATCCCATTAAAACAAACACACACACA 660
consensus_6919#1      ---------------------------------------GTCTGGGAGATCGCCCACAAG 21
                                                              *       * * * ****  

consensus_6919#0      TAAAGGCACTGGCGTATCGATAGCTCGATCGTTTACCGAATTTGTCGAATACGAATACAG 720
consensus_6919#1      CAAGG---CTAGCTTTTCGAATAGAAGA---------AAACCCGTAGTATGTTAAGGCGT 69
                       ** *   ** ** * ****      **          **   ** * **   **  *  

consensus_6919#0      TTCGAAAACGGATGTGCTGTGGCCGGTACAAAGTACAAACCCCTCCTCTCCAGGAAACAC 780
consensus_6919#1      TACTAA-------GTGTCGTGTGCGGTTCGGGTTTTGTGCCATTGGAAC---GGCTCTAT 119
                      * * **       ***  ***  **** *    *     **  *        **    * 

consensus_6919#0      ACACACACACTAAAAGCGCCCTGCTGTGCATTACATGACAAGGCATCCGATTGCATCCCA 840
consensus_6919#1      CTTTTTACACTAAAAGCGCCCTGCTGTGCATTACATGACAAGGCATCCGATTGCATCCCA 179
                            ******************************************************

consensus_6919#0      TGCCTGACTTCCCCCGAACCCGGCAAATTCGATGTGATAAGTTCAACACAACATTTAACT 900
consensus_6919#1      TGCCTGACTTCCCCCGAACCCGGTAAATTCGATGTGATAAGTTCAACACAACATTTAACT 239
                      *********************** ************************************

consensus_6919#0      GTATTAAGCTCTGCGCGGGAAAGGATGGGGCTGACGGAAGCGCTCTCGTCACACACACAC 960
consensus_6919#1      GTATTAAGCTCTGCGAGGGAGAGGATGGAGATGACGGAAGCGCTCTCGTCACACACACAC 299
                      *************** **** ******* * *****************************

consensus_6919#0      ACTTACAACTAGAGACAACTGGTCAGTTTAAATTTCCCACACAAGCAATAGACAGTGGTG 1020
consensus_6919#1      ACTTACAACTAGAGACAACTGGTCAGTTTAAATTTCCCACACAAGCAATAGACAGTGGTG 359
                      ************************************************************

consensus_6919#0      AGAATGTGATGCGTTGCGTTGTTTCTGTGTGTATCCCAACCACCCTCCAGAACAAGGTAA 1080
consensus_6919#1      AGAATGTGATGCGTTGCTTTGTTTCGGTGTGTATCCCAACCCCCCTCCCGAACAAGGTAA 419
                      ***************** ******* *************** ****** ***********

consensus_6919#0      ACACAACAAAAAAAACACCCCAAACTGTTGCAGTATAGTAGAACTCTTACGTGCCTATAG 1140
consensus_6919#1      ACAAAACAAAAAAA-CACCCCAAACTGTTGCAGTATAGTAGAACTCTTACGTGCCTATAG 478
                      *** ********** *********************************************

consensus_6919#0      TCTGTTAACAACTCGAACCGAACGCAACGCGCGGACATGGAAAACAAAAGTATTTGAATG 1200
consensus_6919#1      TCTGTTAACAACTCGAACCGAACGCAACGCGCGGACATGGAAAACAAAAGTATTTGAG-- 536
                      *********************************************************   

consensus_6919#0      AAAGATATAAAGAAGGGAGGAAAAACAAAGAAGAGCAGTGCAACAAAAAAAGAAGTACGA 1260
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      AATACACCGTAACACAACACAACACACACACCTAAATACGCAGAGCTAATATTTCCAAAA 1320
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      CACGATACCAAAACAGAAAGACTTTGCCAACAAAAACAAAAAACAAAAACTGGCGGAAAA 1380
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      GCGAAGATGCAAACGAAACAAGGCGAATTAGGTAAACCCCGTGGAGGTGTTGACTAATGT 1440
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      CTCCCTCCACACCAACCAGCGGATGCCAGCCTATTGAT 1478
consensus_6919#1      --------------------------------------
                                                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)