These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6922#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 803 fasta sequence [CACGCGTCCGCGGACGCGTGGGCGGACGCGTGGGAAACATTCTCCAGCGGAGGTGCCCAGTCCTAGCAAGGGGAAGCAACACTGCCATAAAGGAGAAGCTTCGAAACGCATTTCGTGTACAGTTGATTGAGTGATTTTAATCCCAAAAAAGAAAGATTATGGCAGAAGAAAACAAAAATGGAGCAGCACCGGCAACGGAAGTGGAACCGCAAGATGCGCCCGAAGAGCAAAAGGCTGCATCCGAGGAGGCAGCACCACCATCCGATGTTGAATCGGAACCAGAGCAGGAGCCTCAAATTTCAACTTTCGAACGGTTGAAACTATTCCTGGCGGAAACGAACAAGTTCCTGTTAATGTACGACGATCTGGTGGAGAACAAGGACAAGCACAAGAGCGTCTTCCTGTGTGCAGTGAACGAGCTGCGCGAGCGGCTGGTAACGTTGCTCCAACGGTACATCCTGCACACGATGGTCAAGGAGGATTTCCTGTACAAGCACATTGTGTGCTGCGGCGGAGAGGTAAGACACCGGAGCAAGAATGCTGGAGGTTCTGTAGAAATGTTTGTCTAATTTCCGTTTTCTCTATTCCCTGGAAAATAAGGATGCGGAGGCAATTAATACGGAAGAATTCGAAGAGCACTATCAGGAAGTTCACAGCGAGGCAGACAAGGCTATTTCCTTGCCAGAGGTAATATGAACGTTTTATATTTTTTTTTATTTTTCCGTTCCGATTGCTTACGTCTTTACGTTTTCTTATTTGCTTTCTTCGCGACAGCTTGACGAGATTCGTGCGTACTCGGCCGA] [+] EMBL BM578729 [CACGCGTCCGCGGACGCGTGGGCGGACGCGTGGGAAACATTCTCCAGCGGAGGTGCCCAGTCCTAGCAAGGGGAAGCAACACTGCCATAAAGGAGAAGCTTCGAAACGCATTTCGTGTACAGTTGATTGAGTGATTTTAATCCCAAAAAAGAAAGATTATGGCAGAAGAAAACAAAAATGGAGCAGCACCGGCAACGGAAGTGGAACCGCAAGATGCGCCCGAAGAGCAAAAGGCTGCATCCGAGGA ] [+] EMBL BX607418 [ GAGGTGCCCAGTCCTAGCAAGGGGAAGCAACACTGCCATAAAGGAGAAGCTTCGAAACGCATTTCGTGTACAGTTGATTGAGTGATTTTAATCCCAAAAAAGAAAGATTATGGCAGAAGAAAACAAAAATGGAGCAGCACCGGCAACGGAAGTGGAACCGCAAGATGCGCCCGAAGAGCAAAAGGCTGCATCCGAGGAGGCAGCACCACCATCCGATGTTGAATCGGAACCAGAGCAGGAGCCTCAAATTTCAACTTTCGAACGGTTGAAACTATTCCTGGCGGAAACGAACAAGTTCCTGTTAATGTACGACGATCTGGTGGAGAACAAGGACAAGCACAAGAGCGTCTTCCTGTGTGCAGTGAACGAGCTGCGCGAGCGGCTGGTAACGTTGCTCCAACGGTACATCCTGCACACGATGGTCAAGGAGGATTTCCTGTACAAGCACATTGTGTGCTGCGGCGGAGAGGTAAGACACCGGAGCAAGAATGCTGGAGGTTCTGTAGAAATGTTTGTCTAATTTCCGTTTTCTCTATTCCCTGGAAAATAAGGATGCGGAGGCAATTAATACGGAAGAATTCGAAGAGCACTATCAGGAAGTTCACAGCGAGGCAGACAAGGCTATTTCCTTGCCAGAGGTAATATGAACGTTTTATATTTTTTTTTATTTTTCCGTTCCGATTGCTTACGTCTTTACGTTTTCTTATTTGCTTTCTTCGCGACAGCTTGACGAGATTCGTGCGTACTCGGCCGA] consensusID : consensus_6922#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence [TTCGCAGCCGACGTGGAATCAAAACGGGACGCACGGCGAGAGAGAAAAAAAAGAACACAAACCACAGCCAAGATTGTTGAAACGCGTACATTCGCCTCTCATTGCGTCTTTGAATTCTGCTTGCGCTACACCACCGCGTTACTGAAAACATCTCAAACCCCGTAAAAGAGTCAACAAAAAAATGGATCAATTGACGAAATTCTACGAACCCGGCCGCTCGTTCGCCAAGGACTCGATCCGACTGATCAAGCGCTGCACCAAGCCGGACCGCCGGGAGTTCCAGAAGATTGCCAAGCGGCGCGTCTCGCCCGAGGATGTGGAGAAGTGTACGGAGCGGTTCTCCAAGGCGAAGGCGGTCAACTCGATCCTGCGCCACGTGGCCGACATTATGGGCTTCGACAACCAGAAGCTGGAGGAGCTGTACGAGAAGACGGCGTGGTACTTCGAGGAGAAGCACAACTACAAAGTGACCGCGTTCGATGTGTTCAAGCAGTGTGCCGTTGATCCTTCGCTGCTGGACGAGTGCGGCCTCGAGCCGGAGGTGAAAGAATCGCTGCTCAGCAACATCCAGCGCAAGCTCGTGTCGCAGGCGGGTGAAAATTCGGGGCCGCACATCGAGTGCGCCTGCTACG] [+] EMBL CNS09E2U [TTCGCAGCCGACGTGGAATCAAAACGGGACGCACGGCGAGAGAGAAAAAAAAGAACACAAACCACAGCCAAGATTGTTGAAACGCGTACATTCGCCTCTCATTGCGTCTTTGAATTCTGCTTGCGCTACACCACCGCGTTACTGAAAACATCTCAAACCCCGTAAAAGAGTCAACAAAAAAATGGATCAATTGACGAAATTCTACGAACCCGGCCGCTCGTTCGCCAAGGACTCGATCCGACTGATCAAGCGCTGCACCAAGCCGGACCGCCGGGAGTTCCAGAAGATTGCCAAGCGGCGCGTCTCGCCCGAGGATGTGGAGAAGTGTACGGAGCGGTTCTCCAAGGCGAAGGCGGTCAACTCGATCCTGCGCCACGTGGCCGACATTATGGGCTTCGACAACCAGAAGCTGGAGGAGCTGTACGAGAAGACGGCGTGGTACTTCGAGGAGAAGCACAACTACAAAGTGACCGCGTTCGATGTGTTCAAGCAGTGTGCCGTTGATCCTTCGCTGCTGGACGAGTGCGGCCTCGAGCCGGAGGTGAAAGAATCGCTGCTCAGCAACATCCAGCGCAAGCTCGTGTCGCAGGCGGGTGAAAATTCGGGGCCGCACATCGAGTGCGCCTGCTACG] consensusID : consensus_6922#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence [CCGAGCAGCAGCAACCAGCCAGCCAGCCAGCCAGCCAGCTCCGTTCGTTTGCGTCTCGGTGTGTACACGCGCGACTAAAAAAGAGAGAGAGAGAGAGAGAGAGTGAGAGTGTGTACTGAAAACCCCCGACGGTAACAACACCTTCCCGTTTTCCCACCCCGCTCGAAGTCCTTCCAGAGAGTGCGTGTAGTTGTGCTCTGGTGTGTGTCTCTGCGTGTGTGTTTTAGTAGTGTGCACGGGGTCGCGTTCTGGAGCGTGTTGTGCCGTGTGCGTGTGTGTGATTCGCGTTTCGTAAGCCGCATAAAGTGTGCGTGCCGCGGTGCGTCGTAGTGTCGTAGTAAGTGCGGGCGCGTGAAAAGCCACCCCCCCTCCCGATCCCTCCCAACAACAACAACACCCCGCTACTGTCCCACAAGAGTATACCCTAAACCACGGTTTTTACATCATCACGAGAGTGTTTGTGTGTGTAAGCGCAGAAAAAAAGTAAGCAAAAATACTACAAAAAGGAATAGCGCAATTCCTACAAAACAAAACACAAAACGCAGCCTTCCGTGTGTGACTGAACGCGTCCCGAGAACGGCGTGTTT] [+] EMBL BM606155 [CCGAGCAGCAGCAACCAGCCAGCCAGCCAGCCAGCCAGCTCCGTTCGTTTGCGTCTCGGTGTGTACACGCGCGACTAAAAAAGAGAGAGAGAGAGAGAGAGAGTGAGAGTGTGTACTGAAAACCCCCGACGGTAACAACACCTTCCCGTTTTCCCACCCCGCTCGAAGTCCTTCCAGAGAGTGCGTGTAGTTGTGCTCTGGTGTGTGTCTCTGCGTGTGTGTTTTAGTAGTGTGCACGGGGTCGCGTTCTGGAGCGTGTTGTGCCGTGTGCGTGTGTGTGATTCGCGTTTCGTAAGCCGCATAAAGTGTGCGTGCCGCGGTGCGTCGTAGTGTCGTAGTAAGTGCGGGCGCGTGAAAAGCCACCCCCCCTCCCGATCCCTCCCAACAACAACAACACCCCGCTACTGTCCCACAAGAGTATACCCTAAACCACGGTTTTTACATCATCACGAGAGTGTTTGTGTGTGTAAGCGCAGAAAAAAAGTAAGCAAAAATACTACAAAAAGGAATAGCGCAATTCCTACAAAACAAAACACAAAACGCAGCCTTCCGTGTGTGACTGAACGCGTCCCGAGAACGGCGTGTTT] consensusID : consensus_6922#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence [GCTGCCGGAAGTGTTCGGAGCTGCCCTCGGCTACTTTGTCAGCCAGCCGACGGAAGGGGACGGCATGGTGATTAAGGATCCGTTCAGCACTGCCAACGGTGCCGTCGTGGTGGTGGCGGAAGGGCTCGAATCCATAGCGGTGGAGGGTGCCAAGAACTACCAGCTGGACGGTAACACCGGCTCCGTGGCGCTGAGCGAGCTGATCCAGAAGTCAGCCGACCATCAGGGCGTCAGCTGCGAGGGCGACCTGAAGGAATCGTCCGACAGCTCCAACACCCCGCTCGGCACGGTCCAGCCGGACGACGAGGAGGTGAAGCCGCAGCACCTGAAGCCAAAATCGAACAAAGCCGACTCGGACTCCCTGCGCCAGCTCGCGTGCCTGAACGGGCTGAGCGAACTGCTCGTCACGTCAACCGATCGCATCCCGACCGTGCACATCGGGCGCGTAACGTACGAAGCCCTGCTGGCCGCGCACGAACCC] [+] EMBL BX608540 [GCTGCCGGAAGTGTTCGGAGCTGCCCTCGGCTACTTTGTCAGCCAGCCGACGGAAGGGGACGGCATGGTGATTAAGGATCCGTTCAGCACTGCCAACGGTGCCGTCGTGGTGGTGGCGGAAGGGCTCGAATCCATAGCGGTGGAGGGTGCCAAGAACTACCAGCTGGACGGTAACACCGGCTCCGTGGCGCTGAGCGAGCTGATCCAGAAGTCAGCCGACCATCAGGGCGTCAGCTGCGAGGGCGACCTGAAGGAATCGTCCGACAGCTCCAACACCCCGCTCGGCACGGTCCAGCCGGACGACGAGGAGGTGAAGCCGCAGCACCTGAAGCCAAAATCGAACAAAGCCGACTCGGACTCCCTGCGCCAGCTCGCGTGCCTGAACGGGCTGAGCGAACTGCTCGTCACGTCAACCGATCGCATCCCGACCGTGCACATCGGGCGCGTAACGTACGAAGCCCTGCTGGCCGCGCACGAACCC] consensusID : consensus_6922#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 164 fasta sequence [CCGCCCACGCGTCCGAAAAAAACCCAGATTGGCAGGAGGCAACCCCCCAACCAACAGCAGGAGGCAACAGCAAAGCAACCAAAACCCGAACCTACCGCTAACTAGTAGAACAATTACAGCACCAGACTGGGTAATAAATTGATTGGTAAAACGTTACTATAGTT] [+] EMBL BM650275 [CCGCCCACGCGTCCGAAAAAAACCCAGATTGGCAGGAGGCAACCCCCCAACCAACAGCAGGAGGCAACAGCAAAGCAACCAAAACCCGAACCTACCGCTAACTAGTAGAACAATTACAGCACCAGACTGGGTAATAAATTGATTGGTAAAACGTTACTATAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6922#3 ------------------GCTGCCGGAAGTGTTCGGAGCTGCCCTCGGCTACTTTGTCAG 42 consensus_6922#4 ------------------------------------------------------------ consensus_6922#0 -CACGCGTCCGCGGACGCGTGGGCGGACGCGTGGGAAACATTCTCCAGCGGAGGTGCCCA 59 consensus_6922#2 CCGAGCAGCAGCAACCAGCCAGCCAGCCAGCCAGCCAGCTCCGTTCGTTTGCGTCTCGGT 60 consensus_6922#1 ------------------------------------------------------------ consensus_6922#3 CCAG-CCGACGGAAGGGGACGGCATGGTGATTAAGGATCCGTTCAGCACTGCCAACGGTG 101 consensus_6922#4 ------------------------------------------------------------ consensus_6922#0 GTC--CTAGCAAGGGGAAGCAACACTGCCATAAAGGAGAAGCTTCGAAACGCATTTCGTG 117 consensus_6922#2 GTGTACACGCGCGACTAAAAAAGAGAGAGAGAGAGAGAGAGAGTGAGAGTGTGTACTGAA 120 consensus_6922#1 -TTCGCAGCCGACGTGGAATCAAAACGGGACGCACGGCGAGAGAGAAAAAAAAGAACACA 59 consensus_6922#3 CCGTCGTGGTGGTGGCGGAAGGGCTCGAATCCATAGCGGTGGAGGGTGCCAAGAACTACC 161 consensus_6922#4 ------------------------------------------------------------ consensus_6922#0 TACAGTTGATTGAGTGATTTTAATCCCAAAAAAGAAAGATT-ATGGCAGAAGAAAACAAA 176 consensus_6922#2 AACCCCCGACGGTAACAACACCTTCCCGTTTTCCCACCCCGCTCGAAGTCCTTCCAGAGA 180 consensus_6922#1 AACCACAGCCAAGATTGTTG-AAACGCGTACATTCGCCTCTCATTGCGTCTTTGAATTCT 118 consensus_6922#3 AGCTGGACGGTAACACCGGCTCCGTGGCGCTGAGCGAGCTGATCCAGAAGTCAGCCGACC 221 consensus_6922#4 ------------------------------------------------------------ consensus_6922#0 AATGGAGCAGCACCGGCAACGGAAGTGGAACCGCAAGATGCGCCCGAAGAGCAAAAGGCT 236 consensus_6922#2 GTGCGTGTAGTTGTGCTCTGGTGTGTGTCTCTGCGTGTGTGTTTTAGTAGTGTGCACGGG 240 consensus_6922#1 GCTTGCGCTACACCACCGCGTTACTGAAAACATCTCAAACCCCGTAAAAGAGTCAACAAA 178 consensus_6922#3 ATCAGGGCGTCAGCTGCGAGGGCGACCTGAA--------GGAATCGTCCGACAGCTCCAA 273 consensus_6922#4 -------------CCGCCCACGCGTCCGAAA--------AAAA----CCCAGATTGGCAG 35 consensus_6922#0 GCATCCGAGGAGGCAGCACCACCATCCGATGTTGAATCGGAACCAGAGCAGGAGCCTCAA 296 consensus_6922#2 GTCGCGTTCTGGAGCGTGT-TGTGCCGTGTGCGTGTGTGTGATTCGCGTTTCGTAAGCCG 299 consensus_6922#1 AAAATGGATCAATTGACGAAATTCTACGAACCCGGCCGCTCGTTCGCCAAGGACTCGATC 238 consensus_6922#3 CACCCCGCT--CGGCACGGTCCAGCCGGACGACGAGGAGGTGAAGCCGCAGCACCTGAAG 331 consensus_6922#4 GAGGCAACC--C-------CCCAACCA-ACAGC-AGGAGGCAACAGCAAAGCAACCAAAA 84 consensus_6922#0 ATTTCAACTTTCGAACGGTTGAAACTATTCCTGGCGGAAACGAACAAGTTCCTGTTAATG 356 consensus_6922#2 CATAAAGTGTGCGTGCCG-CGGTGCGTCGTAGTGTCGTAGTAAGTGCGGGCGCGTGAAAA 358 consensus_6922#1 CGACTGATCAAGCGCTGCACCAAGCCGGACCGCCGGGAGTT--CCAGAAGATTGCCAAGC 296 * * * consensus_6922#3 CCAAA--ATCGAACAAA-GCCGACTCGGAC--TCCCTGCGCCAGCTCG-CGTGCC----- 380 consensus_6922#4 CCCGA--ACCTACCGCT-AACTAGTAGAACAATTACAGCACCAGACTG-GGTAA------ 134 consensus_6922#0 TACGACGATCTGGTGGAGAACAAGGACAAGCACAAGAGCGTCTTCCTG-TGTGCAG---- 411 consensus_6922#2 GCCAC--CCCCCCTCCCGATCCCTCCCAACAACAACAACACCCCGCTACTGTCCCA---- 412 consensus_6922#1 GGCGCGTCTCGCCCGAGGATGTGGAGAAGTGTACGGAGCGGTTCTCCAAGGCGAAGGCGG 356 * * * consensus_6922#3 -TGAACGGGCTGAGCGAACTGCTCGT-----CACGTCAACCGATCGCATCCCGACCGTGC 434 consensus_6922#4 -TAAATTGATTG-GTAAAACGTTACT-----ATAGTT----------------------- 164 consensus_6922#0 -TGAACGAGCTGCGCGAGCGGCTGGT-----AACGTTGCTCCAACGGTACATCCTGCACA 465 consensus_6922#2 -CAAGAGTATACCCTAAACCACGGTTTTTACATCATCACGAGAGTGTTTGTGTGTGTAAG 471 consensus_6922#1 TCAACTCGATCCTGCGCCACGTGGCCGACATTATGGGCTTCGACAACCAGAAGCTGGAGG 416 * consensus_6922#3 ACATCGGGCGCGTAACGTACGAAGCCCTGCTGGCCGCGCACGAACCC------------- 481 consensus_6922#4 ------------------------------------------------------------ consensus_6922#0 CGATGGTCAAGGAGGATTTCCTGTACAAGCACATTGTGTGCTGCGGCGGAGAGGTAAGAC 525 consensus_6922#2 CGCAGAAAAAAAGTAAGCAAAAATACTACAAAAAGGAATAGCGCAATTCCTACAAAACAA 531 consensus_6922#1 AGCTGTACGAGAAGACGGCGTGGTACTTCGAGGAGAAGCACAACTACAAAGTGACCGCGT 476 consensus_6922#3 ------------------------------------------------------------ consensus_6922#4 ------------------------------------------------------------ consensus_6922#0 ACCGGAGCAAGAATGCTGGAGGTTCTGTAGAAATGTTTGTCTAATTTCCGTTTTCTCTAT 585 consensus_6922#2 AACACAAAACGCAGCCTTCCGTGTGTGACTGAACGCGTCCCGAGAACGGCGTGTTT---- 587 consensus_6922#1 TCGATGTGTTCAAGCAGTGTGCCGTTGATCCTTCGCTGCTGGACGAGTGCGGCCTCGAGC 536 consensus_6922#3 ------------------------------------------------------------ consensus_6922#4 ------------------------------------------------------------ consensus_6922#0 TCCCTGGAAAATAAGGATGCGGAGGCAATTAATACGGAAGAATTCGAAGAGCACTATCAG 645 consensus_6922#2 ------------------------------------------------------------ consensus_6922#1 CGGAGGTGAAAGAATCGCTGCTCAGCAACATCCAGCGCAAGCTCGTGTCGCAGGCGGGTG 596 consensus_6922#3 ------------------------------------------------------------ consensus_6922#4 ------------------------------------------------------------ consensus_6922#0 GAAGTTCACAGCGAGGCAGACAAGGCTATTTCCTTGCCAGAGGTAATATGAACGTTTTAT 705 consensus_6922#2 ------------------------------------------------------------ consensus_6922#1 AAAATTCGGGGCCGCACATCGAGTGCGCCTGCTACG------------------------ 632 consensus_6922#3 ------------------------------------------------------------ consensus_6922#4 ------------------------------------------------------------ consensus_6922#0 ATTTTTTTTTATTTTTCCGTTCCGATTGCTTACGTCTTTACGTTTTCTTATTTGCTTTCT 765 consensus_6922#2 ------------------------------------------------------------ consensus_6922#1 ------------------------------------------------------------ consensus_6922#3 -------------------------------------- consensus_6922#4 -------------------------------------- consensus_6922#0 TCGCGACAGCTTGACGAGATTCGTGCGTACTCGGCCGA 803 consensus_6922#2 -------------------------------------- consensus_6922#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||