These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6927#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 814 fasta sequence [CCGGACTAGTTCTAGCCCACGCGTCCGGCCTTGCCCCGTACAAGCGTACAGCGCACGAGATCATTCACCACACAGTTCGCCAGTGTGCTGATTCGTATGCGGTTGCGTGTAGTAGCGGATCATAGTTAGCGTCGCTCCAAACATGTCCACCACGCTTCGCCGAGTGTTTGTTTACGGGACGCTGAAGAGGGGCGAACCGAACCACCACTGGCTGACGGATGCGGCCAACGGGCAGGCCCGCTTCATCGCCAAAGGACGTACGGTTGGGCGCTATCCGCTCGTCGTTGCCACCCGGCACAACGTGCCCTTTCTGCTGGACGTTCGCGGCACCGGGCACTCGGTCGTGGGCGAAATTTACGAAATCGACGATCGCATGCTGGGCCGGCTCGACGTGCTGGAGGACTATCCGCAGCTGTACGATCGCCGGCCAGAAGAGATACGGAACGAGACGAGCAGTGCGGTGGAGTGCTGCTGGGTCTATCTGATACGAAGCTTTCCGAAGCGTTTGCTGGAGCTGCCCCTGCTGGAGGAGTACCGGGACACGCCCGAAAAGCCGTACGCGGAATCGGATGATATCGTGTTTGATGAGTGATCTGTATTGGATGGGGTGGTACGGTTGGTACGATGCCGCCAATAATAGCAGGCGCTGGTACTAATTAGACATTCAGGGCGCGTGCACAACAAAAATAAAGATAAGCTGCAGCGGCAAAGAAGAGCCAACAGATTCGCAATGAGTCGTCAAACATTATTGAAGGTCATTTGAAATCGCTTAAACACATCTTTTATAATCTACATTGGGGAACATGATGGGAAG] [+] EMBL BM652293 [CCGGACTAGTTCTAGCCCACGCGTCCGGCCTTGCCCCGTACAAGCGTACAGCGCACGAGATCATTCACCACACAGTTCGCCAGTGTGCTGATTCGTATGCGGTTGCGTGTAGTAGCGGATCATAGTTAGCGTCGCTCCAAACATGTCCACCACGCTTCGCCGAGTGTTTGTTTACGGGACGCTGAAGAGGGGCGAACCGAACCACCACTGGCTGACGGATGCGGCCAACGGGCAGGCCCGCTTCATCGCCAAAGGACGTACGGTTGGGCGCTATCCGCTCGTCGTTGCCACCCGGCACAACGTGCCCTTTCTGCTGGACGTTCGCGGCACCGGGCACTCGGTCGTGGGCGAAATTTACGAAATCGACGATCGCATGCTGGGCCGGCTCGACGTGCTGGAGGACTATCCGCAGCTGTACGATCGCCGGCCAGAAGAGATACGGAACGAGACGAGCAGTGCGGTGGAGTGCTGCTGGGTCTATCTGATACGAAGCTTTCCGAAGCGTTTGCTGGAGCTGCCCCTGCTGGAGGAGTACCGGGACACGCCCGAAAAGCCGTACGCGGAATCGGATGATATCGTGTTTGATGAGTGATCTGTATTGGATGGGGTGGTACGGTTGGTACGATGCCGCCAATAATAGCAGGCGCTGGTACTAATTAGACAT ] [-] EMBL BX627418 [ TTTACGGGACGCTGAAGAGGGGCGANCCGANCCACCACTGGCTGACGGATGCGGCCAACGGGCAGGCCCGCTTCATCGCCAAAGGACGTACGGTTGGGCGCTATCCGCTCGTCGTTGCCACCCGGCACAACGTGCCCTTTCTGCTGGACGTTCGCGGCACCGGGCACTCGGTCGTGGGCGAAATTTACGAAATCGACGATCGCATGCTGGGCCGGCTCGACGTGCTGGAGGACTATCCGCAGCTGTACGATCGCCGGCCAGAAGAGATACGGAACGAGACGAGCAGTGCGGTGGAGTGCTGCTGGGTCTATCTGATACGAAGCTTTCCGAAGCGTTTGCTGGAGCTGCCCCTGCTGGAGGAGTACCGGGACACGCCCGAAAAGCCGTACGCGGAATCGGATGATATCGTGTTTGATGAGTGATCTGTATTGGATGGGGTGGTACGGTTGGTACGATGCCGCCAATAATAGCAGGCGCTGGTACTAATTAGACATTCAGGGCGCGTGCACAACAAAAATAAAGATAAGCTGCAGCGGCAAAGAAG ] [+] EMBL BX613773 [ CCCTTTCTGCTGGACGTTCGCGGCACCGGGCACTCGGTCGTGGGCGAAATTTACGAAATCGACGATCGCATGCTGGGCCGGCTCGACGTGCTGGAGGACTATCCGCAGCTGTACGATCGCCGGCCAGAAGAGATACGGAACGAGACGAGCAGTGCGGTGGAGTGCTGCTGGGTCTATCTGATACGAAGCTTTCCGAAGCGTTTGCTGGAGCTGCCCCTGCTGGAGGAGTACCGGGACACGCCCGAAAAGCGGTACGCGGAATCGGATGATATCGTGTTTGATGAGTGATCTGTATTGGATGGGGTGGTACGGTTGGTACAATGCCGCCAATAATAGCAGGCGCTGGTACTAATTAGACATTCAGGGCGCGTGCACAACAAAAATAAAGATAAGCTGCAGCGACAAAGAAGAGCCAACAGATTCGCAATGAGTCGTCAAACATTATTGAAGGTCATTTGAAATCGCTTAAACACATCTTTTATAATCTACATTGGGGAACATGATGGGAAG] consensusID : consensus_6927#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence [TGAGATTGGCATAGTGCGCTAGCCTTGCCCCGTACAAGCGTACAGCGCACGAGATCATTCACCACACAGTTCGCCAGTGTGCTGATTCGTATGCGGTTGCGTGTAGTAGCGGATCATAGTTAGCGTCGCTCCAAACATGTCCACCACGCTTCGCCGAGTGTTTGTTTACGGGACGCTGAAGAGGGGCGAACCGAACCACCACTGGCTGACGGATGCGGCCAACGGGCAGGCCCGCTTCATCGCCAAAGGACGTACGGTTGGGCGCTATCCGCTCGTCGTTGCCACCCGGCACAACGTGCCCTTTCTGCTGGACGTTCGCGGCACCGGGCACTCGGTCGTGGGCGAAATTTACGAAATCGACGATCGCATGCTGGGCCGGCTCGACGTGCTGGAGGACTATCCGCAGCTGTACGATCGCCGGCCAGAAGAGATACGGAACGAGACGAGCAGTGCGGTGGAGTGCTGCTGGGTCTATCTGATACGAAGCTTTCCGAAGCGTTTGCTGGAGCTGCCCCTGCTGGAGGAGTACCGGGACACGCCCGAAAAGCCGTACGCGGAATCGGATGATATCGTGTTTGATGAGTGATCTGTATTGGATGGGGTGGTACGGTTGGTACGATGCCGCCAATAATAGCAGGCGCTGGTACTAATTAGACAT] [-] EMBL BX620333 [TGAGATTGGCATAGTGCGCTAGCCTTGCCCCGTACAAGCGTACAGCGCACGAGATCATTCACCACACAGTTCGCCAGTGTGCTGATTCGTATGCGGTTGCGTGTAGTAGCGGATCATAGTTAGCGTCGCTCCAAACATGTCCACCACGCTTCGCCGAGTGTTTGTTTACGGGACGCTGAAGAGGGGCGAACCGAACCACCACTGGCTGACGGATGCGGCCAACGGGCAGGCCCGCTTCATCGCCAAAGGACGTACGGTTGGGCGCTATCCGCTCGTCGTTGCCACCCGGCACAACGTGCCCTTTCTGCTGGACGTTCGCGGCACCGGGCACTCGGTCGTGGGCGAAATTTACGAAATCGACGATCGCATGCTGGGCCGGCTCGACGTGCTGGAGGACTATCCGCAGCTGTACGATCGCCGGCCAGAAGAGATACGGAACGAGACGAGCAGTGCGGTGGAGTGCTGCTGGGTCTATCTGATACGAAGCTTTCCGAAGCGTTTGCTGGAGCTGCCCCTGCTGGAGGAGTACCGGGACACGCCCGAAAAGCCGTACGCGGAATCGGATGATATCGTGTTTGATGAGTGATCTGTATTGGATGGGGTGGTACGGTTGGTACGATGCCGCCAATAATAGCAGGCGCTGGTACTAATTAGACAT] consensusID : consensus_6927#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [CCTCGAGGCACGACTCGGGCTTTAGGCGTATGCGGTTGCGTGTAGTAGCGGATCATAGTTAGCGTCGCTCCAAACATGTTCACCNCACGGCTTCGCCGAGTGTTTGTTTACGGGACGCTTAAAGGGGCGAACCGGAAACCACCACTGGCTGACGGATGCTGGGCAACGGGGCAGGGCCCGGCGTTCATACGCGCAAAGGTCGTACGGTGGGCGCGCTATACCGCTACGTCGGTTTGGCACACCGGGGACAACGTGCCCTTTCTNGGCTGGANCGTATCCGCGGGCGACCCGTGTGGCGACTCTGNGTCCGTGGGCGAACATTTTACTGGAAAATTCGGANCGGATACCGCCATTAGCTAGGGAGCCCAGGGGTTCTGNACACGTTGCTAGGAGGGGACTAATTCCCGGCG] [+] EMBL BX469056 [CCTCGAGGCACGACTCGGGCTTTAGGCGTATGCGGTTGCGTGTAGTAGCGGATCATAGTTAGCGTCGCTCCAAACATGTTCACCNCACGGCTTCGCCGAGTGTTTGTTTACGGGACGCTTAAAGGGGCGAACCGGAAACCACCACTGGCTGACGGATGCTGGGCAACGGGGCAGGGCCCGGCGTTCATACGCGCAAAGGTCGTACGGTGGGCGCGCTATACCGCTACGTCGGTTTGGCACACCGGGGACAACGTGCCCTTTCTNGGCTGGANCGTATCCGCGGGCGACCCGTGTGGCGACTCTGNGTCCGTGGGCGAACATTTTACTGGAAAATTCGGANCGGATACCGCCATTAGCTAGGGAGCCCAGGGGTTCTGNACACGTTGCTAGGAGGGGACTAATTCCCGGCG] consensusID : consensus_6927#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence [TCAGCAGAATCGGNCCGAGGTGCGATCATAGTTAGCGTCGCTCCAAAACATGTNCACCACGCTTCGCCGAGTGTTGTTTACGGGACGCTAAGAGGGGCGAACCGAACCACCACTGGCTGACGGATGCGGCCAACGGGCAGGCCCGCTTCATCGCCAAAGGTCGTACGGTGGGGCGCTATCCGCTCGTCGTTGCCACCCGGCACAACGTGCCCTTTCTGCTGGACGTTCGCGGCACCGGGCACTCGGTCGTGGGCGAAATTTACGAAATCGACGATCGCATGCTGGGCCGGCTCGACGTGCTGGAGGACTATCCGCAGCTGTACGATCGCCGGCCAGAAGAGATACGGAACGAGACGAGCAGTGCGGTGGAGTGCTGCTGGGTCTATC] [+] EMBL BX466619 [TCAGCAGAATCGGNCCGAGGTGCGATCATAGTTAGCGTCGCTCCAAAACATGTNCACCACGCTTCGCCGAGTGTTGTTTACGGGACGCTAAGAGGGGCGAACCGAACCACCACTGGCTGACGGATGCGGCCAACGGGCAGGCCCGCTTCATCGCCAAAGGTCGTACGGTGGGGCGCTATCCGCTCGTCGTTGCCACCCGGCACAACGTGCCCTTTCTGCTGGACGTTCGCGGCACCGGGCACTCGGTCGTGGGCGAAATTTACGAAATCGACGATCGCATGCTGGGCCGGCTCGACGTGCTGGAGGACTATCCGCAGCTGTACGATCGCCGGCCAGAAGAGATACGGAACGAGACGAGCAGTGCGGTGGAGTGCTGCTGGGTCTATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6927#0 CCGGACTAGTTCTAGCCCACGCGTCCGGCCTTGCCCCGTACAAGCGTACAGCGCACGAGA 60 consensus_6927#1 ------TGAGATTGGCATAGTGCGCTAGCCTTGCCCCGTACAAGCGTACAGCGCACGAGA 54 consensus_6927#3 ------------------------------------------------------------ consensus_6927#2 ------------------------------------------------------------ consensus_6927#0 TCATTCACCACACAGTTCGCCAGTGTGCTGATTCGTATGCGGTTGCGTGTAGTAGCG-GA 119 consensus_6927#1 TCATTCACCACACAGTTCGCCAGTGTGCTGATTCGTATGCGGTTGCGTGTAGTAGCG-GA 113 consensus_6927#3 -----------------------------------TCAGCAGAATCGGNCCGAGGTGCGA 25 consensus_6927#2 -------CCTCGAGGCACGACTCGGGCTTTAGGCGTATGCGGTTGCGTGTAGTAGCG-GA 52 * ** * ** * * * ** consensus_6927#0 TCATAGTTAGCGTCGCTCCAAA-CATGTCCACCAC---GCTTCGCCGAGTGTTTGTTTAC 175 consensus_6927#1 TCATAGTTAGCGTCGCTCCAAA-CATGTCCACCAC---GCTTCGCCGAGTGTTTGTTTAC 169 consensus_6927#3 TCATAGTTAGCGTCGCTCCAAAACATGTNCACCAC---GCTTCGCCGAGTGTT-GTTTAC 81 consensus_6927#2 TCATAGTTAGCGTCGCTCCAAA-CATGTTCACCNCACGGCTTCGCCGAGTGTTTGTTTAC 111 ********************** ***** **** * *************** ****** consensus_6927#0 GGGACGCTGAAGAGGGGCGAACCG--AACCACCACTGGCTGACGGATGC-GGCCAACGGG 232 consensus_6927#1 GGGACGCTGAAGAGGGGCGAACCG--AACCACCACTGGCTGACGGATGC-GGCCAACGGG 226 consensus_6927#3 GGGACGCT-AAGAGGGGCGAACCG--AACCACCACTGGCTGACGGATGC-GGCCAACGGG 137 consensus_6927#2 GGGACGCTTAA-AGGGGCGAACCGGAAACCACCACTGGCTGACGGATGCTGGGCAACGGG 170 ******** ** ************ *********************** ** ******* consensus_6927#0 C--AGGCCCGC--TTCAT-CGC-CAAAGGACGTACGGTTGG-GCGCTAT-CCGCT-CGTC 283 consensus_6927#1 C--AGGCCCGC--TTCAT-CGC-CAAAGGACGTACGGTTGG-GCGCTAT-CCGCT-CGTC 277 consensus_6927#3 C--AGGCCCGC--TTCAT-CGC-CAAAGGTCGTACGGTGGG-GCGCTAT-CCGCT-CGTC 188 consensus_6927#2 GCAGGGCCCGGCGTTCATACGCGCAAAGGTCGTACGGTGGGCGCGCTATACCGCTACGTC 230 ****** ***** *** ****** ******** ** ******* ***** **** consensus_6927#0 GTTGC----CACCCGGCACAACGTGCCCTTTCTG--CTGGACGTTCGCGGCACCGGGCAC 337 consensus_6927#1 GTTGC----CACCCGGCACAACGTGCCCTTTCTG--CTGGACGTTCGCGGCACCGGGCAC 331 consensus_6927#3 GTTGC----CACCCGGCACAACGTGCCCTTTCTG--CTGGACGTTCGCGGCACCGGGCAC 242 consensus_6927#2 GGTTTGGCACACCGGGGACAACGTGCCCTTTCTNGGCTGGAN---CGTATCCGCGGGCGA 287 * * **** ** **************** ***** ** * ***** consensus_6927#0 TCGGTCGTGGGCGAAATTTACGAAATCGACGATCGCATGCTGGGCCGGCTCGACGTGCTG 397 consensus_6927#1 TCGGTCGTGGGCGAAATTTACGAAATCGACGATCGCATGCTGGGCCGGCTCGACGTGCTG 391 consensus_6927#3 TCGGTCGTGGGCGAAATTTACGAAATCGACGATCGCATGCTGGGCCGGCTCGACGTGCTG 302 consensus_6927#2 CC---CGTGTGGCGACTCTGNG---TCCGTGGGCGAACATTTTACTGG---AAAATTCGG 338 * **** * * * * * ** * ** * * * ** * * * * consensus_6927#0 GAGGACTATCCGCAGCTGTACGATCGCCGGCCAGAAGAGATACGGAACGAGACGAGCAGT 457 consensus_6927#1 GAGGACTATCCGCAGCTGTACGATCGCCGGCCAGAAGAGATACGGAACGAGACGAGCAGT 451 consensus_6927#3 GAGGACTATCCGCAGCTGTACGATCGCCGGCCAGAAGAGATACGGAACGAGACGAGCAGT 362 consensus_6927#2 ANCGGATACC----GCCATTAGCTAGGGAGCCCAGGGGTTCTGNACACGTTGCTAGGAG- 393 * ** * ** * * * * *** * *** * ** ** consensus_6927#0 GCGGTGGAGTGCTGCTGGGTCTATCTGATACGAAGCTTTCCGAAGCGTTTGCTGGAGCTG 517 consensus_6927#1 GCGGTGGAGTGCTGCTGGGTCTATCTGATACGAAGCTTTCCGAAGCGTTTGCTGGAGCTG 511 consensus_6927#3 GCGGTGGAGTGCTGCTGGGTCTATC----------------------------------- 387 consensus_6927#2 GGGACTAATTCCCGGCG------------------------------------------- 410 * * * * * * * consensus_6927#0 CCCCTGCTGGAGGAGTACCGGGACACGCCCGAAAAGCCGTACGCGGAATCGGATGATATC 577 consensus_6927#1 CCCCTGCTGGAGGAGTACCGGGACACGCCCGAAAAGCCGTACGCGGAATCGGATGATATC 571 consensus_6927#3 ------------------------------------------------------------ consensus_6927#2 ------------------------------------------------------------ consensus_6927#0 GTGTTTGATGAGTGATCTGTATTGGATGGGGTGGTACGGTTGGTACGATGCCGCCAATAA 637 consensus_6927#1 GTGTTTGATGAGTGATCTGTATTGGATGGGGTGGTACGGTTGGTACGATGCCGCCAATAA 631 consensus_6927#3 ------------------------------------------------------------ consensus_6927#2 ------------------------------------------------------------ consensus_6927#0 TAGCAGGCGCTGGTACTAATTAGACATTCAGGGCGCGTGCACAACAAAAATAAAGATAAG 697 consensus_6927#1 TAGCAGGCGCTGGTACTAATTAGACAT--------------------------------- 658 consensus_6927#3 ------------------------------------------------------------ consensus_6927#2 ------------------------------------------------------------ consensus_6927#0 CTGCAGCGGCAAAGAAGAGCCAACAGATTCGCAATGAGTCGTCAAACATTATTGAAGGTC 757 consensus_6927#1 ------------------------------------------------------------ consensus_6927#3 ------------------------------------------------------------ consensus_6927#2 ------------------------------------------------------------ consensus_6927#0 ATTTGAAATCGCTTAAACACATCTTTTATAATCTACATTGGGGAACATGATGGGAAG 814 consensus_6927#1 --------------------------------------------------------- consensus_6927#3 --------------------------------------------------------- consensus_6927#2 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||