These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6931#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1172 fasta sequence [CGGCTCCCTAATCTCATCGCTCGCCATCATCAACGCGGGCACACAAACCGGGCCCAGTACTACCATAGCCAGTGCGTGCGCGTGTCACGACCGACGACCACTGGCACCAGTCAGATCCACTGCAGCTACTCTTCCATCAAATCACGCAACCCACCCGGGTCCCGCTATCAGCCACGCTATCAAACACGCGTCGTGCCTGACGCCTGATCCCGGGGACGGGCGCTCCAGAAATTACCGACTCCCACCAGGCACCCATCCGACCCGCACGTTCTCTACGATGGCGTCGAGGAATATTAGTGGCACCGTCGGCAGGACTGATCGTGCCCGCTGCATCGTCTAGTGCACGTGCAAGTGTATGTGTGTGTGTGAAGGTGTGTGATGTTAGGGCAATTTTGCCTAGGCAGCTCTCTGACTCTCTAGCGCAGCATCTCAACCGCGCTCCCCCGGTGGGGGGAACACCACCCCAAAACACAGAACAGTACCACCTCCCCCCCCCCGCCACTCCTCAACAACGCGCAATCCAACCTCGTTTTGGTCCGGAAGAGGAGCATTATCAATTAGCAACTATTAAGAAACGAAGGAAAAGCAACAGAAAACCTGACGACGCTCTCAACACGCGCTGCCCGATCGACATGGAAGAAACAGAAACTCATGCAGTGGCAGCGGGCGTCAAGCACAGCGGCAGCATGTNCAACCTGAGCGACATATCGGGCAACACGGCGGTACCGGCCGGTGCGCATGCCGGGCCCGGCCGCCCCCGCATGGACATTGCGGCCGTGATTGACTGCGAGAAGAGCGCGTGCCTGAGCCACCGGAAGGCGGCCCTCGAGGAGGTGCAGCAGGCGTGCGCCGCGGTCGGTGCGAACCTGCAGCTGCTGCCGTTCGATGTGCTCGACTACCACAACGAGAACAACAACAAGCTCGAGTACTTCTACAACGCGGACGTGGTCGTGGTCGACCTGAGCGTCCAGACGCAGCAGAGCACGCTGTGCTACCTGCTCGGCGTGCGCGAAAGCTTCAAGATGAAGGAAAACATCGTCATCTACAACGACACGCAGACGGAGGCGACGCTGCGCATGAAGATCTCGTGCGGCAACTATCAGTTCCTCTCGTACCGGCTGCACGAGAATGGTGGCGCGATCGTCACCAGCCCGCTCAAGCTGGAGGAGACG] [+] EMBL BX620602 [CGGCTCCCTAATCTCATCGCTCGCCATCATCAACGCGGGCACACAAACCGGGCCCAGTACTACCATAGCCAGTGCGTGCGCGTGTCACGACCGACGACCACTGGCACCAGTCAGATCCACTGCAGCTACTCTTCCATCAAATCACGCAACCCACCCGGGTCCCGCTATCAGCCACGCTATCAAACACGCGTCGTGCCTGACGCCTGATCCCGGGGACGGGCGCTCCAGAAATTACCGACTCCCACCAGGCACCCATCCGACCCGCACGTTCTCTACGATGGCGTCGAGGAATATTAGTGGCACCGTCGGCAGGACTGATCGTGCCCGCTGCATCGTCTAGTGCACGTGCAAGTGTATGTGTGTGTGTGAAGGTGTGTGATGTTAGGGCAATTTTGCCTAGGCAGCTCTCTGACTCTCTAGCGCAGCATCTCAACCGCGCTCCCCCGGTGGGGGGAACACCACCCCAAAACACAGAACAGTACCACCTCCCCCCCCCCGCCACTCCTCAACAACGCGCAATCCAACCTCGTTTTGGTCCGGAAGAGGAGCATTATCAATTAGCAACTATTAAGAAACGAAGGAAAAGCAACAGAAAACCTGACGACGCTCTCAACACGCGCTGCCCGATCGACATGGAAGAAACAGAAACTCATGCAGTGGCAGCGGGCGTCAAGCACAGCGGCAGCATGTNCAACCTGAGCGACATATCGGGCAACACGGCGGTACCG ] [+] EMBL AGA285114 [ CATCGCTCGCCATCATCAACGCGGGCACACAAACCGGGCCCAGTACTACCATAGCCAGTGCGTGCGCGTGTCACGACCGACGACCACTGGCACCAGTCAGATCCACTGCAGCTACTCTTCCATCAAATCACGCAACCCACCCGGGTCCCGCTATCAGCCACGCTATCAAACACGCGTCGTGCCTGACGCCTGATCCCGGGGACGGGCGCTCCAGAAATTACCGACTCCCACCAGGCACCCATCCGACCCGCACGTTCTCTACGATGGCGTCGAGGAATATTAGTGGCACCGTCGGCAGGACTGATCGTGCCCGCTGCATCGTCTAGTGCACGTGCAAGTGTATGTGTGTGTGTGAAGGTGTGTGATGTTAGGGCAATTTTGCCTAGGCAGCTCTCTGACTCTCTAGCGCAGCATCTCAACCGCGCTCCCCCGGGGGGGGGAACACCACCC ] [+] EMBL AGA284749 [ AATTAGCAACTATTAAGAAACGAAGGAAAAGCAACAGAAAACCTGACGACGCTCTCAACACGCGCTGCCCGATCGACATGGAAGAAACAGAAACTCATGCAGTGGCAGCGGGCGTCAAGCACAGCGGCAGCATGTCCAACCTGAGCGACATATCGGGCAACACGGCGGTACCGGCCGGTGCGCATGCCGGGCCCGGCCGCCCCCGCATGGACATTGCGGCCGTGATTGACTGCGAGAAGAGCGCGTGCCTGAGCCACCGGAAGGCGGCCCTCGAGGAGGTGCAGCAGGCGTGCGCCGCGGTCGGTGCGAACCTGCAGCTGCTGCCGTTCGATGTGCTCGACTACCACAACGAGAACAACAACAAGCTCGAGTACTTCTACAACGCGGACGTGGTCGTGGTCGACCTGAGCGTCCAGACGCAGCAGAGCA ] [-] EMBL AGA283822 [ CGGCGGTACCGCCCGGTGCGCATGCCGGGCCCGGCCGCCCCGGCATGGACATTGCGCCCGTGATTGACTGCGAGAAGAGCGCGTGCCTGAGCCACCGGAAGGCGGCCCTCGAGGAGGTGCAGCAGGCGTGCGCCGCGGTCGGTGCGAACCTGCAGCTGCTGCCGTTCGATGTGCTCGACTACCACAACGAGAACAACAACAAGCTCGAGTACTTCTACAACGCGGACGTGGTCGTGGTCGACCTGAGCGTCCAGACGCAGCAGAGCACGCTGTGCTACCTGCTCGGCGTGCGCGAAAGCTTCAAGATGAAGGAAAACATCGTCATCTACAACGACACGCAGACGGAGGCGACGCTGCGCATGAAGATCTCGTGCGGCAACTATCAGTTCCTCTCGTACCGGCTGCACGAGAATGGTGGCGCGATCGTCACCAGCCCGCTCAAGCTGGAGGAGACG] [-] EMBL AGA283455 [ CAAGCTCGAGTACTTCTACAACGCGGACGTGGTCGTGGTCGACCTGAGCGTCCAGACGCAGCAGAGCACGCTGTGCTACCTGCTCGGCGTGCGCGAAAGCTTCAAGATGAAGGAAAACATCGTCATCTACAACGACACGCAGACGGAGGCGACGCTGCGCATGAAGATCTCGTGCGGCAACTATCAGTTCCTCTCGTACCGGCTGCACGAGAATGGTGGCGCGATCGTCACCAGCCCGCTCAAGCTGGAGGAGACG] consensusID : consensus_6931#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [CCGGAAAGGTTCGTTTCTTGGAGCGTGATTCTCGTGAACCTCTGTGGTTTTTTTTTTCGGAAACTCATGCAGTGGCAGCGGGCGTCAAGCACAGCGGCAGCATGTCCAACCTGAGCGACATATCGGGCAACACGGCGGTACCGGCCGGTGCGCATGCCGGGCCCGGCCGCCCCCGCATGGACATTGCGGCCGTGATTGACTGCGAGAAGAGCGCGTGCCTGAGCCACCGGAAGGCGGCCCTCGAGGAGGTGCAGCAGGCGTGCGCCGCGGTCGGTGCGAACCTGCAGCTGCTGCCGTTCGATGTGCTCGACTACCACAACGAGAACAACAACAAGCTCGAGTACTTCTACAACGCGGACGTGGTCGTGGTCGACCTGAGCGTCCAGACGCAGCAGAGCACGCTGTGCTACCTGCTCGGCGTGCGCGAAAGCTTCAAGATGAAGGAAAACATCGTCATCTACAACGACACGCAGACGGAGGCGACGCTGCGCATGAAGATCTCGTGCGGCAACTATCAGTTCCTCTCGTACCGGCTGCACGAGAATGGTGGCGCGATCGTCACCAGCCCGCTCAAGCTGGAGGAGA] [+] EMBL BM590578 [CCGGAAAGGTTCGTTTCTTGGAGCGTGATTCTCGTGAACCTCTGTGGTTTTTTTTTTCGGAAACTCATGCAGTGGCAGCGGGCGTCAAGCACAGCGGCAGCATGTCCAACCTGAGCGACATATCGGGCAACACGGCGGTACCGGCCGGTGCGCATGCCGGGCCCGGCCGCCCCCGCATGGACATTGCGGCCGTGATTGACTGCGAGAAGAGCGCGTGCCTGAGCCACCGGAAGGCGGCCCTCGAGGAGGTGCAGCAGGCGTGCGCCGCGGTCGGTGCGAACCTGCAGCTGCTGCCGTTCGATGTGCTCGACTACCACAACGAGAACAACAACAAGCTCGAGTACTTCTACAACGCGGACGTGGTCGTGGTCGACCTGAGCGTCCAGACGCAGCAGAGCACGCTGTGCTACCTGCTCGGCGTGCGCGAAAGCTTCAAGATGAAGGAAAACATCGTCATCTACAACGACACGCAGACGGAGGCGACGCTGCGCATGAAGATCTCGTGCGGCAACTATCAGTTCCTCTCGTACCGGCTGCACGAGAATGGTGGCGCGATCGTCACCAGCCCGCTCAAGCTGGAGGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6931#0 CGGCTCCCTAATCTCATCGCTCGCCATCATCAACGCGGGCACACAAACCGGGCCCAGTAC 60 consensus_6931#1 ------------------------------------------------------------ consensus_6931#0 TACCATAGCCAGTGCGTGCGCGTGTCACGACCGACGACCACTGGCACCAGTCAGATCCAC 120 consensus_6931#1 ------------------------------------------------------------ consensus_6931#0 TGCAGCTACTCTTCCATCAAATCACGCAACCCACCCGGGTCCCGCTATCAGCCACGCTAT 180 consensus_6931#1 ------------------------------------------------------------ consensus_6931#0 CAAACACGCGTCGTGCCTGACGCCTGATCCCGGGGACGGGCGCTCCAGAAATTACCGACT 240 consensus_6931#1 ------------------------------------------------------------ consensus_6931#0 CCCACCAGGCACCCATCCGACCCGCACGTTCTCTACGATGGCGTCGAGGAATATTAGTGG 300 consensus_6931#1 ------------------------------------------------------------ consensus_6931#0 CACCGTCGGCAGGACTGATCGTGCCCGCTGCATCGTCTAGTGCACGTGCAAGTGTATGTG 360 consensus_6931#1 ------------------------------------------------------------ consensus_6931#0 TGTGTGTGAAGGTGTGTGATGTTAGGGCAATTTTGCCTAGGCAGCTCTCTGACTCTCTAG 420 consensus_6931#1 ------------------------------------------------------------ consensus_6931#0 CGCAGCATCTCAACCGCGCTCCCCCGGTGGGGGGAACACCACCCCAAAACACAGAACAGT 480 consensus_6931#1 ------------------------------------------------------------ consensus_6931#0 ACCACCTCCCCCCCCCCGCCACTCCTCAACAACGCGCAATCCAACCTCGTTTTGGTCCGG 540 consensus_6931#1 ------------------------------------------------------------ consensus_6931#0 AAGAGGAGCATTATCAATTAGCAACTATTAAGAAACGAAGGAAAAGCAACAGAAAACCTG 600 consensus_6931#1 ---------------------------------------------CCGGAAAGGTTCGTT 15 * * * * consensus_6931#0 ACGACGCTCTCAACACGCGCTGCCCGATCGACATGGAAGAAACAGAAACTCATGCAGTGG 660 consensus_6931#1 TCTTGGAGCGTGATTCTCGTGAACCTCTGTGGTTTTTTTTTTCGGAAACTCATGCAGTGG 75 * * * * * ** ** * * * **************** consensus_6931#0 CAGCGGGCGTCAAGCACAGCGGCAGCATGTNCAACCTGAGCGACATATCGGGCAACACGG 720 consensus_6931#1 CAGCGGGCGTCAAGCACAGCGGCAGCATGTCCAACCTGAGCGACATATCGGGCAACACGG 135 ****************************** ***************************** consensus_6931#0 CGGTACCGGCCGGTGCGCATGCCGGGCCCGGCCGCCCCCGCATGGACATTGCGGCCGTGA 780 consensus_6931#1 CGGTACCGGCCGGTGCGCATGCCGGGCCCGGCCGCCCCCGCATGGACATTGCGGCCGTGA 195 ************************************************************ consensus_6931#0 TTGACTGCGAGAAGAGCGCGTGCCTGAGCCACCGGAAGGCGGCCCTCGAGGAGGTGCAGC 840 consensus_6931#1 TTGACTGCGAGAAGAGCGCGTGCCTGAGCCACCGGAAGGCGGCCCTCGAGGAGGTGCAGC 255 ************************************************************ consensus_6931#0 AGGCGTGCGCCGCGGTCGGTGCGAACCTGCAGCTGCTGCCGTTCGATGTGCTCGACTACC 900 consensus_6931#1 AGGCGTGCGCCGCGGTCGGTGCGAACCTGCAGCTGCTGCCGTTCGATGTGCTCGACTACC 315 ************************************************************ consensus_6931#0 ACAACGAGAACAACAACAAGCTCGAGTACTTCTACAACGCGGACGTGGTCGTGGTCGACC 960 consensus_6931#1 ACAACGAGAACAACAACAAGCTCGAGTACTTCTACAACGCGGACGTGGTCGTGGTCGACC 375 ************************************************************ consensus_6931#0 TGAGCGTCCAGACGCAGCAGAGCACGCTGTGCTACCTGCTCGGCGTGCGCGAAAGCTTCA 1020 consensus_6931#1 TGAGCGTCCAGACGCAGCAGAGCACGCTGTGCTACCTGCTCGGCGTGCGCGAAAGCTTCA 435 ************************************************************ consensus_6931#0 AGATGAAGGAAAACATCGTCATCTACAACGACACGCAGACGGAGGCGACGCTGCGCATGA 1080 consensus_6931#1 AGATGAAGGAAAACATCGTCATCTACAACGACACGCAGACGGAGGCGACGCTGCGCATGA 495 ************************************************************ consensus_6931#0 AGATCTCGTGCGGCAACTATCAGTTCCTCTCGTACCGGCTGCACGAGAATGGTGGCGCGA 1140 consensus_6931#1 AGATCTCGTGCGGCAACTATCAGTTCCTCTCGTACCGGCTGCACGAGAATGGTGGCGCGA 555 ************************************************************ consensus_6931#0 TCGTCACCAGCCCGCTCAAGCTGGAGGAGACG 1172 consensus_6931#1 TCGTCACCAGCCCGCTCAAGCTGGAGGAGA-- 585 ****************************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||