These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6933#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 872 fasta sequence [ATCGGTAGATTTCGAAAGTTTGTACTGTGGTTTTAGGGAAGAATCCTGAATAGTGGTTGTGCAGCAGTTGTGAAAAGTGCAGTACGATGAATACGGAAACGATCGATACGGGACCAGTGTTGGAGGGTGCACTGAATGTGGCCGAGTTCTATCGTGACGCGACCGTGCTGGTTACCGGTGGCACCGGCTTTATCGGCAAAGTGTTGGTGGAGAAGCTGCTGCGTTGCTTTGAGGTGAAGAAGATCTTTCTGCTGATCCGGCGCAAAGCGAACGTCAGTGCGACGGATCGTCTCCAGCAGATGCTGGAAGGACCGATCTTCGACACAATCCGTAGCACGGCACCGGATGCGAAGGAGCGCTTTGCTAAGGTCGTAGCAATGGATGCCGCATTCGATCGCGAGGACATTGTGGATGACGTCGACAAGACGAAACTTTGTAACGAAGTGCAGATCGTTTTCCACGTGATGGCCTCGATCCGGTTCAACGAGGTGCTGGACGAAGCGATCGCGATCAACGTCACCTCAGCGCAGCGGCTGTACGCCCTCGCCAGCTCGATGGCGGAACTGCGCTCGATCGTGCACGTGTCGACGTTCTACGCGAACTGTGATCGGCCATACATCGAGGAGCGCATCTACGACGACGTACCGTACGGAGGGCTCGAGCACATCCAGCTATTCTTCAAGAGCCTCAGCGTGGAGGAGAAGGAACGCATGACGCGGGTGGTGCTGGGCAATATGCCCAACTCGTACGTGTTTAGCAAAAAGTGTGCGGAGGCCATGGTTGGCCGCGAGTTTGGCCATCTGCCGATTGGGATCTTCCGGCCGCCGATCGTGATCTCGAGCTACCGCGAGCCGGAACCGGGCTGGGTGGAC] [+] EMBL BX621566 [ATCGGTAGATTTCGAAAGTTTGTACTGTGGTTTTAGGGAAGAATCCTGAATAGTGGTTGTGCAGCAGTTGTGAAAAGTGCAGTACGATGAATACGGAAACGATCGATACGGGACCAGTGTTGGAGGGTGCACTGAATGTGGCCGAGTTCTATCGTGACGCGACCGTGCTGGTTACCGGTGGCACCGGCTTTATCGGCAAAGTGTTGGTGGAGAAGCTGCTGCGTTGCTTTGAGGTGAAGAAGATCTTTCTGCTGATCCGGCGCAAAGCGAACGTCAGTGCGACGGATCGTCTCCAGCAGATGCTGGAAGGACCGATCTTCGACACAATCCGTAGCACGGCACCGGATGCGAAGGAGCGCTTTGCTAAGGTCGTAGCAATGGATGCCGCATTCGATCGCGAGGACATTGTGGATGACGTCGACAAGACGAAACTTTGTAACGAAGTGCAGATCGTTTTCCACGTGATGGCCTCGATCCGGTTCAACGAGGTGCTGGACGAAGCGATCGCGATCAACGTCACCTCAGCGCAGCGGCTGTACGCCCTCGCCAGCTCGATGGCGGAACTGCGCTCGATCGTGCACGTGTCGACGTTCTACGCGAACTGTGATCGGCCATACATCGAGGAGCGCATCTACGACGACGTACCGTACGGAGGGCTCGAGCACATCCAGCTATTCTTCAAGAGCCTCAGCGTGGAGGAGAAGGAACGCATGACGCGGGTGGTGCTGGGCAATATGCCCAACTCGTA ] [+] EMBL BX622546 [ AGGGAAGAATCCTGAATAGTGGTTGTGCAGCAGTTGTGAAAAGTGCAGTACGATGAATACGGAAACGATCGATACGGGACCAGTGTTGGAGGGTGCACTGAATGTGGCCGAGTTCTATCGTGACGCGACCGTGCTGGTTACCGGTGGCACCGGCTTTATCGGCAAAGTGTTGGTGGAGAAGCTGCTGCGTTGCTTTGAGGTGAAGAAGATCTTTCTGCTGATCCGGCGCAAAGCGAACGTCAGTGCGACGGATCGTCTCCAGCAGATGCTGGAAGGACCGATCTTCGACACAATCCGTAGCACGGCACCGGATGCGAAGGAGCGCTTTGCTAAGGTCGTAGCAATGGATGCCGCATTCGATCGCGAGGACATTGTGGATGACGTCGACAAGACGAAACTTTGTAACGAAGTGCAGATCGTTTTCCACGTGATGGCCTCGATCCGGTTCAACGAGGTGCTGGACGAAGCGATCGCGATCAACGTCACCTCAGCGCAGCGGCTGTACGCCCTCGCCAGCTCGATGGCGGAACTGCGCTCGATCGTGCACGTGTCGACGTTCTACGCGAACTGTGATCGGCCATACATCGAGGAGCGCATCTACGACGACGTACCGTACGGAGGGCTCGAGCACATCCAGCTATTCTTCAAGAGCCTCAGCGTGGAGGAGAANGAACGCATGACGCGGGTGGTGCTGGGCAATATGCCCAACTCGTACGTGTTTAGCAAAAAGTGTGCGGANGCCATGGTTGGCCGCGAGTTTGGNCATCTGCCGATTGGGATCTTCCGGNCGCCGATCGTGATCTCG ] [+] EMBL BX626306 [ CTATTCTTCAAGAGCCTCAGCGTGGAGGANAAGGAACGCATGACGCGGGTGGTGCTGGGTAATATGCCCAACTCGTACGTGTTTAGCAAAAAGTGTGCGGAGGCCATGGTTGGCCNCGAGTTTGGCCATCTGCCNATTGGGATCTTCCGGCCGCCGATCGNGATCTCCAGCTACCGC ] [+] EMBL BX622537 [ ACGCATGACGCGGGTGGTGCTGGGCAATATGCCCAACTCGTACGTGTTTAGCAAAAAGTGTGCGGAGGCCATGGTTGGCCGCGAGTTTGGCCATCTGCCGATTGGGATCTTCCGGCCGCCGATCGTGATCTCNAGCTACCGGGAGCCGGAACCGGGCTGGGTGGAC] consensusID : consensus_6933#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 543 fasta sequence [GAGGCAAGAATCGCCACGAGGTTGTAAACTTTGTAACGAAGTGCAGATCGTTTTCCACGTGATGGGCTCGATCCGGTTCAACGAGGTGCTGGACGAAGCGATCGCGATCAACGTCACCTCAGGCAGCGGNTGTACGCCCTCGCCAGCTCGATGGCGGAACTGCGCTCGATCGTGCACGTGTCGACGTTCTANGCGAACTGTGATCGGCATACATCGAGGAGCGCATCTACGACGACGTACCGTACGGAGGGCTCGAGCACATCCAGTATTCTTCAAGAGCCTCAGCGTGGAGGAGAAGGAACGCATGACGCGGGTGGTGCTGGGCCAATATGNCCAATCGTACGTGTTTAGCAAAAAGTGTGCGGAGGCCATGGTTTGGGCCGCCGAGGTTTTGGCATCTGCCGATTGGGATCTTCCGGCCGCCGATCGTGATCTCGAGCTACCGGGAGCCGGAACCGGGCTGGGTGGACTGTTTCCACGGTGCCACCGGGTTGTAGCGTGCCGGTCAGTCCTGGGCAAGACGATGTGGTACTATGGGAAGCC] [+] EMBL AL696996 [GAGGCAAGAATCGCCACGAGGTTGTAAACTTTGTAACGAAGTGCAGATCGTTTTCCACGTGATGGGCTCGATCCGGTTCAACGAGGTGCTGGACGAAGCGATCGCGATCAACGTCACCTCAGGCAGCGGNTGTACGCCCTCGCCAGCTCGATGGCGGAACTGCGCTCGATCGTGCACGTGTCGACGTTCTANGCGAACTGTGATCGGCATACATCGAGGAGCGCATCTACGACGACGTACCGTACGGAGGGCTCGAGCACATCCAGTATTCTTCAAGAGCCTCAGCGTGGAGGAGAAGGAACGCATGACGCGGGTGGTGCTGGGCCAATATGNCCAATCGTACGTGTTTAGCAAAAAGTGTGCGGAGGCCATGGTTTGGGCCGCCGAGGTTTTGGCATCTGCCGATTGGGATCTTCCGGCCGCCGATCGTGATCTCGAGCTACCGGGAGCCGGAACCGGGCTGGGTGGACTGTTTCCACGGTGCCACCGGGTTGTAGCGTGCCGGTCAGTCCTGGGCAAGACGATGTGGTACTATGGGAAGCC] consensusID : consensus_6933#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [TGGATCTTCGGCGCGATCGTGATCTCAGCTACGCGAGCCGGAACGGGCTGGTGGACTGTTCACGTGCCACCGGGTTGTGCGTGCCGGTCGTTCTGGGCAAGACGATGTGGTACTATGGGAAGCCGGAGGTAAAAGCCGTTCATGGTCGCCGGTCGATCATACGGTGTCGGGGATGTTGGCGGCGGCGTGCGACATCTATCGCCGACAGTGCACCATTCTGCCGGTGGAAAAGCCGGTCCCGGTGTATAACTTTACGTTCGAGAAGAACCGGTTCGCTTACGGCGATATGGTGGAGCTGGTCTGCTCTGGTTTGCCGAACGTGCTCGATCGATGGCTGAGTCGCATCAAATGCCGCATCAGTCCTTGGAAAATATTTCCCCAAATGCTGCT] [+] EMBL AL932825 [TGGATCTTCGGCGCGATCGTGATCTCAGCTACGCGAGCCGGAACGGGCTGGTGGACTGTTCACGTGCCACCGGGTTGTGCGTGCCGGTCGTTCTGGGCAAGACGATGTGGTACTATGGGAAGCCGGAGGTAAAAGCCGTTCATGGTCGCCGGTCGATCATACGGTGTCGGGGATGTTGGCGGCGGCGTGCGACATCTATCGCCGACAGTGCACCATTCTGCCGGTGGAAAAGCCGGTCCCGGTGTATAACTTTACGTTCGAGAAGAACCGGTTCGCTTACGGCGATATGGTGGAGCTGGTCTGCTCTGGTTTGCCGAACGTGCTCGATCGATGGCTGAGTCGCATCAAATGCCGCATCAGTCCTTGGAAAATATTTCCCCAAATGCTGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6933#0 ATCGGTAGATTTCGAAAGTTTGTACTGTGGTTTTAGGGAAGAATCCTGAATAGTGGTTGT 60 consensus_6933#1 ------------------------------------------------------------ consensus_6933#2 ------------------------------------------------------------ consensus_6933#0 GCAGCAGTTGTGAAAAGTGCAGTACGATGAATACGGAAACGATCGATACGGGACCAGTGT 120 consensus_6933#1 ------------------------------------------------------------ consensus_6933#2 ------------------------------------------------------------ consensus_6933#0 TGGAGGGTGCACTGAATGTGGCCGAGTTCTATCGTGACGCGACCGTGCTGGTTACCGGTG 180 consensus_6933#1 ------------------------------------------------------------ consensus_6933#2 ------------------------------------------------------------ consensus_6933#0 GCACCGGCTTTATCGGCAAAGTGTTGGTGGAGAAGCTGCTGCGTTGCTTTGAGGTGAAGA 240 consensus_6933#1 ------------------------------------------------------------ consensus_6933#2 ------------------------------------------------------------ consensus_6933#0 AGATCTTTCTGCTGATCCGGCGCAAAGCGAACGTCAGTGCGACGGATCGTCTCCAGCAGA 300 consensus_6933#1 ------------------------------------------------------------ consensus_6933#2 ------------------------------------------------------------ consensus_6933#0 TGCTGGAAGGACCGATCTTCGACACAATCCGTAGCACGGCACCGGATGCGAAGGAGCGCT 360 consensus_6933#1 ------------------------------------------------------------ consensus_6933#2 ------------------------------------------------------------ consensus_6933#0 TTGCTAAGGTCGTAGCAATGGATGCCGCATTCGATCGCGAGGACATTGTGGATGACGTCG 420 consensus_6933#1 --------------------------------------------GAGGCAAGAATCGCCA 16 consensus_6933#2 ------------------------------------------------------------ consensus_6933#0 ACAAGACG-AAACTTTGTAACGAAGTGCAGATCGTTTTCCACGTGATGGCCTCGATCCGG 479 consensus_6933#1 CGAGGTTGTAAACTTTGTAACGAAGTGCAGATCGTTTTCCACGTGATGGGCTCGATCCGG 76 consensus_6933#2 ---------------TGGATCTTCGGCGCGATCGTGATCTCAGCTACG----CGAGCCGG 41 ** * * * ****** ** * * * *** **** consensus_6933#0 TTCAACGAGGTGCTGGACGAAGCGATCGCGATCAACGTCACCTCAGCGCAGCGGCTGTAC 539 consensus_6933#1 TTCAACGAGGTGCTGGACGAAGCGATCGCGATCAACGTCACCTCAG-GCAGCGGNTGTAC 135 consensus_6933#2 ---AACGGGCTGGTGGAC----TGTTCACG-----TGCCACCGGGTTGTGCGTGCCGGTC 89 **** * ** ***** * ** ** * **** * * * * consensus_6933#0 GCCCTCGCCAGCTCGATGGCGGAACTGCGCTCGATCGTGCACGTGTCGACGTTCTACGCG 599 consensus_6933#1 GCCCTCGCCAGCTCGATGGCGGAACTGCGCTCGATCGTGCACGTGTCGACGTTCTANGCG 195 consensus_6933#2 GTTCTGGGCAAGACGATG-TGGTACTATGGGAAGCCGGAG----GTAAAAGCCGTTCATG 144 * ** * ** ***** ** *** * ** ** * * * * consensus_6933#0 AACTGTGATCGGCCATACATCGAGGAGCGCATCTACGACGACGTACCGTACGGAGGGCTC 659 consensus_6933#1 AACTGTGATCGGC-ATACATCGAGGAGCGCATCTACGACGACGTACCGTACGGAGGGCTC 254 consensus_6933#2 GTCGCCGGTCGATCATACGGTGTCGGGGATGTTGGCGGCGGCGTGCGACATCTATCGCCG 204 * * *** **** * * * * ** ** *** * * * ** consensus_6933#0 G-AGCACATCCAGCTATTCTTCAAGA-----GCCTCAGCGTGGAGGAGAAGGAACGCATG 713 consensus_6933#1 G-AGCACATCCAG-TATTCTTCAAGA-----GCCTCAGCGTGGAGGAGAAGGAACGCATG 307 consensus_6933#2 ACAGTGCACCATTCTGCCGGTGGAAAAGCCGGTCCCGGTGTATAACTTTACGTTCGAGAA 264 ** ** * * * * * * * * * ** * * * ** consensus_6933#0 ACGCGGGTGGTGCTGGGC-AATATGCCCAACTCGTACGTGTTTAGCAAA--AAGTGTGCG 770 consensus_6933#1 ACGCGGGTGGTGCTGGGCCAATATGNCCAA-TCGTACGTGTTTAGCAAA--AAGTGTGCG 364 consensus_6933#2 GAACCGGTTCGCTTACGGCGATATGGTGGAGCTGGTCTGCTCTGGTTTGCCGAACGTGCT 324 * *** * * ***** * * * * * * * **** consensus_6933#0 GAGGCCATGGTT--GGCCGC--GAGTTTGGCCATCTGCCGATTGGGATCTTCCGGCCGCC 826 consensus_6933#1 GAGGCCATGGTTTGGGCCGCCGAGGTTTTGGCATCTGCCGATTGGGATCTTCCGGCCGCC 424 consensus_6933#2 CGATCGATGGCT-GAGTCGCATCAAATGCCGCATCAGTCCTTGGAAAATATTT--CCCCA 381 * **** * * *** * **** * * * * * * ** * consensus_6933#0 GATCGTGATCTCGAGCTACCGCGAGCCGGAACCGGGCTGGGTGGAC-------------- 872 consensus_6933#1 GATCGTGATCTCGAGCTACCGGGAGCCGGAACCGGGCTGGGTGGACTGTTTCCACGGTGC 484 consensus_6933#2 AATGCTGCT--------------------------------------------------- 390 ** ** * consensus_6933#0 ----------------------------------------------------------- consensus_6933#1 CACCGGGTTGTAGCGTGCCGGTCAGTCCTGGGCAAGACGATGTGGTACTATGGGAAGCC 543 consensus_6933#2 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||