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Anopheles gambiae
cluster # 6933 cluster # 6933       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6933#0 length = 872 sequences # 4  
consensus_6933#1 length = 543 sequences # 1  
consensus_6933#2 length = 390 sequences # 1  

consensusID : consensus_6933#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 872
fasta sequence
                              [ATCGGTAGATTTCGAAAGTTTGTACTGTGGTTTTAGGGAAGAATCCTGAATAGTGGTTGTGCAGCAGTTGTGAAAAGTGCAGTACGATGAATACGGAAACGATCGATACGGGACCAGTGTTGGAGGGTGCACTGAATGTGGCCGAGTTCTATCGTGACGCGACCGTGCTGGTTACCGGTGGCACCGGCTTTATCGGCAAAGTGTTGGTGGAGAAGCTGCTGCGTTGCTTTGAGGTGAAGAAGATCTTTCTGCTGATCCGGCGCAAAGCGAACGTCAGTGCGACGGATCGTCTCCAGCAGATGCTGGAAGGACCGATCTTCGACACAATCCGTAGCACGGCACCGGATGCGAAGGAGCGCTTTGCTAAGGTCGTAGCAATGGATGCCGCATTCGATCGCGAGGACATTGTGGATGACGTCGACAAGACGAAACTTTGTAACGAAGTGCAGATCGTTTTCCACGTGATGGCCTCGATCCGGTTCAACGAGGTGCTGGACGAAGCGATCGCGATCAACGTCACCTCAGCGCAGCGGCTGTACGCCCTCGCCAGCTCGATGGCGGAACTGCGCTCGATCGTGCACGTGTCGACGTTCTACGCGAACTGTGATCGGCCATACATCGAGGAGCGCATCTACGACGACGTACCGTACGGAGGGCTCGAGCACATCCAGCTATTCTTCAAGAGCCTCAGCGTGGAGGAGAAGGAACGCATGACGCGGGTGGTGCTGGGCAATATGCCCAACTCGTACGTGTTTAGCAAAAAGTGTGCGGAGGCCATGGTTGGCCGCGAGTTTGGCCATCTGCCGATTGGGATCTTCCGGCCGCCGATCGTGATCTCGAGCTACCGCGAGCCGGAACCGGGCTGGGTGGAC]

[+] EMBL BX621566             [ATCGGTAGATTTCGAAAGTTTGTACTGTGGTTTTAGGGAAGAATCCTGAATAGTGGTTGTGCAGCAGTTGTGAAAAGTGCAGTACGATGAATACGGAAACGATCGATACGGGACCAGTGTTGGAGGGTGCACTGAATGTGGCCGAGTTCTATCGTGACGCGACCGTGCTGGTTACCGGTGGCACCGGCTTTATCGGCAAAGTGTTGGTGGAGAAGCTGCTGCGTTGCTTTGAGGTGAAGAAGATCTTTCTGCTGATCCGGCGCAAAGCGAACGTCAGTGCGACGGATCGTCTCCAGCAGATGCTGGAAGGACCGATCTTCGACACAATCCGTAGCACGGCACCGGATGCGAAGGAGCGCTTTGCTAAGGTCGTAGCAATGGATGCCGCATTCGATCGCGAGGACATTGTGGATGACGTCGACAAGACGAAACTTTGTAACGAAGTGCAGATCGTTTTCCACGTGATGGCCTCGATCCGGTTCAACGAGGTGCTGGACGAAGCGATCGCGATCAACGTCACCTCAGCGCAGCGGCTGTACGCCCTCGCCAGCTCGATGGCGGAACTGCGCTCGATCGTGCACGTGTCGACGTTCTACGCGAACTGTGATCGGCCATACATCGAGGAGCGCATCTACGACGACGTACCGTACGGAGGGCTCGAGCACATCCAGCTATTCTTCAAGAGCCTCAGCGTGGAGGAGAAGGAACGCATGACGCGGGTGGTGCTGGGCAATATGCCCAACTCGTA                                                                                                                            ]
[+] EMBL BX622546             [                                  AGGGAAGAATCCTGAATAGTGGTTGTGCAGCAGTTGTGAAAAGTGCAGTACGATGAATACGGAAACGATCGATACGGGACCAGTGTTGGAGGGTGCACTGAATGTGGCCGAGTTCTATCGTGACGCGACCGTGCTGGTTACCGGTGGCACCGGCTTTATCGGCAAAGTGTTGGTGGAGAAGCTGCTGCGTTGCTTTGAGGTGAAGAAGATCTTTCTGCTGATCCGGCGCAAAGCGAACGTCAGTGCGACGGATCGTCTCCAGCAGATGCTGGAAGGACCGATCTTCGACACAATCCGTAGCACGGCACCGGATGCGAAGGAGCGCTTTGCTAAGGTCGTAGCAATGGATGCCGCATTCGATCGCGAGGACATTGTGGATGACGTCGACAAGACGAAACTTTGTAACGAAGTGCAGATCGTTTTCCACGTGATGGCCTCGATCCGGTTCAACGAGGTGCTGGACGAAGCGATCGCGATCAACGTCACCTCAGCGCAGCGGCTGTACGCCCTCGCCAGCTCGATGGCGGAACTGCGCTCGATCGTGCACGTGTCGACGTTCTACGCGAACTGTGATCGGCCATACATCGAGGAGCGCATCTACGACGACGTACCGTACGGAGGGCTCGAGCACATCCAGCTATTCTTCAAGAGCCTCAGCGTGGAGGAGAANGAACGCATGACGCGGGTGGTGCTGGGCAATATGCCCAACTCGTACGTGTTTAGCAAAAAGTGTGCGGANGCCATGGTTGGCCGCGAGTTTGGNCATCTGCCGATTGGGATCTTCCGGNCGCCGATCGTGATCTCG                                 ]
[+] EMBL BX626306             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CTATTCTTCAAGAGCCTCAGCGTGGAGGANAAGGAACGCATGACGCGGGTGGTGCTGGGTAATATGCCCAACTCGTACGTGTTTAGCAAAAAGTGTGCGGAGGCCATGGTTGGCCNCGAGTTTGGCCATCTGCCNATTGGGATCTTCCGGCCGCCGATCGNGATCTCCAGCTACCGC                        ]
[+] EMBL BX622537             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ACGCATGACGCGGGTGGTGCTGGGCAATATGCCCAACTCGTACGTGTTTAGCAAAAAGTGTGCGGAGGCCATGGTTGGCCGCGAGTTTGGCCATCTGCCGATTGGGATCTTCCGGCCGCCGATCGTGATCTCNAGCTACCGGGAGCCGGAACCGGGCTGGGTGGAC]


>consensus_6933#0 ATCGGTAGATTTCGAAAGTTTGTACTGTGGTTTTAGGGAAGAATCCTGAATAGTGGTTGT GCAGCAGTTGTGAAAAGTGCAGTACGATGAATACGGAAACGATCGATACGGGACCAGTGT TGGAGGGTGCACTGAATGTGGCCGAGTTCTATCGTGACGCGACCGTGCTGGTTACCGGTG GCACCGGCTTTATCGGCAAAGTGTTGGTGGAGAAGCTGCTGCGTTGCTTTGAGGTGAAGA AGATCTTTCTGCTGATCCGGCGCAAAGCGAACGTCAGTGCGACGGATCGTCTCCAGCAGA TGCTGGAAGGACCGATCTTCGACACAATCCGTAGCACGGCACCGGATGCGAAGGAGCGCT TTGCTAAGGTCGTAGCAATGGATGCCGCATTCGATCGCGAGGACATTGTGGATGACGTCG ACAAGACGAAACTTTGTAACGAAGTGCAGATCGTTTTCCACGTGATGGCCTCGATCCGGT TCAACGAGGTGCTGGACGAAGCGATCGCGATCAACGTCACCTCAGCGCAGCGGCTGTACG CCCTCGCCAGCTCGATGGCGGAACTGCGCTCGATCGTGCACGTGTCGACGTTCTACGCGA ACTGTGATCGGCCATACATCGAGGAGCGCATCTACGACGACGTACCGTACGGAGGGCTCG AGCACATCCAGCTATTCTTCAAGAGCCTCAGCGTGGAGGAGAAGGAACGCATGACGCGGG TGGTGCTGGGCAATATGCCCAACTCGTACGTGTTTAGCAAAAAGTGTGCGGAGGCCATGG TTGGCCGCGAGTTTGGCCATCTGCCGATTGGGATCTTCCGGCCGCCGATCGTGATCTCGA GCTACCGCGAGCCGGAACCGGGCTGGGTGGAC



consensusID : consensus_6933#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 543
fasta sequence
                              [GAGGCAAGAATCGCCACGAGGTTGTAAACTTTGTAACGAAGTGCAGATCGTTTTCCACGTGATGGGCTCGATCCGGTTCAACGAGGTGCTGGACGAAGCGATCGCGATCAACGTCACCTCAGGCAGCGGNTGTACGCCCTCGCCAGCTCGATGGCGGAACTGCGCTCGATCGTGCACGTGTCGACGTTCTANGCGAACTGTGATCGGCATACATCGAGGAGCGCATCTACGACGACGTACCGTACGGAGGGCTCGAGCACATCCAGTATTCTTCAAGAGCCTCAGCGTGGAGGAGAAGGAACGCATGACGCGGGTGGTGCTGGGCCAATATGNCCAATCGTACGTGTTTAGCAAAAAGTGTGCGGAGGCCATGGTTTGGGCCGCCGAGGTTTTGGCATCTGCCGATTGGGATCTTCCGGCCGCCGATCGTGATCTCGAGCTACCGGGAGCCGGAACCGGGCTGGGTGGACTGTTTCCACGGTGCCACCGGGTTGTAGCGTGCCGGTCAGTCCTGGGCAAGACGATGTGGTACTATGGGAAGCC]

[+] EMBL AL696996             [GAGGCAAGAATCGCCACGAGGTTGTAAACTTTGTAACGAAGTGCAGATCGTTTTCCACGTGATGGGCTCGATCCGGTTCAACGAGGTGCTGGACGAAGCGATCGCGATCAACGTCACCTCAGGCAGCGGNTGTACGCCCTCGCCAGCTCGATGGCGGAACTGCGCTCGATCGTGCACGTGTCGACGTTCTANGCGAACTGTGATCGGCATACATCGAGGAGCGCATCTACGACGACGTACCGTACGGAGGGCTCGAGCACATCCAGTATTCTTCAAGAGCCTCAGCGTGGAGGAGAAGGAACGCATGACGCGGGTGGTGCTGGGCCAATATGNCCAATCGTACGTGTTTAGCAAAAAGTGTGCGGAGGCCATGGTTTGGGCCGCCGAGGTTTTGGCATCTGCCGATTGGGATCTTCCGGCCGCCGATCGTGATCTCGAGCTACCGGGAGCCGGAACCGGGCTGGGTGGACTGTTTCCACGGTGCCACCGGGTTGTAGCGTGCCGGTCAGTCCTGGGCAAGACGATGTGGTACTATGGGAAGCC]


>consensus_6933#1 GAGGCAAGAATCGCCACGAGGTTGTAAACTTTGTAACGAAGTGCAGATCGTTTTCCACGT GATGGGCTCGATCCGGTTCAACGAGGTGCTGGACGAAGCGATCGCGATCAACGTCACCTC AGGCAGCGGNTGTACGCCCTCGCCAGCTCGATGGCGGAACTGCGCTCGATCGTGCACGTG TCGACGTTCTANGCGAACTGTGATCGGCATACATCGAGGAGCGCATCTACGACGACGTAC CGTACGGAGGGCTCGAGCACATCCAGTATTCTTCAAGAGCCTCAGCGTGGAGGAGAAGGA ACGCATGACGCGGGTGGTGCTGGGCCAATATGNCCAATCGTACGTGTTTAGCAAAAAGTG TGCGGAGGCCATGGTTTGGGCCGCCGAGGTTTTGGCATCTGCCGATTGGGATCTTCCGGC CGCCGATCGTGATCTCGAGCTACCGGGAGCCGGAACCGGGCTGGGTGGACTGTTTCCACG GTGCCACCGGGTTGTAGCGTGCCGGTCAGTCCTGGGCAAGACGATGTGGTACTATGGGAA GCC



consensusID : consensus_6933#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence
                              [TGGATCTTCGGCGCGATCGTGATCTCAGCTACGCGAGCCGGAACGGGCTGGTGGACTGTTCACGTGCCACCGGGTTGTGCGTGCCGGTCGTTCTGGGCAAGACGATGTGGTACTATGGGAAGCCGGAGGTAAAAGCCGTTCATGGTCGCCGGTCGATCATACGGTGTCGGGGATGTTGGCGGCGGCGTGCGACATCTATCGCCGACAGTGCACCATTCTGCCGGTGGAAAAGCCGGTCCCGGTGTATAACTTTACGTTCGAGAAGAACCGGTTCGCTTACGGCGATATGGTGGAGCTGGTCTGCTCTGGTTTGCCGAACGTGCTCGATCGATGGCTGAGTCGCATCAAATGCCGCATCAGTCCTTGGAAAATATTTCCCCAAATGCTGCT]

[+] EMBL AL932825             [TGGATCTTCGGCGCGATCGTGATCTCAGCTACGCGAGCCGGAACGGGCTGGTGGACTGTTCACGTGCCACCGGGTTGTGCGTGCCGGTCGTTCTGGGCAAGACGATGTGGTACTATGGGAAGCCGGAGGTAAAAGCCGTTCATGGTCGCCGGTCGATCATACGGTGTCGGGGATGTTGGCGGCGGCGTGCGACATCTATCGCCGACAGTGCACCATTCTGCCGGTGGAAAAGCCGGTCCCGGTGTATAACTTTACGTTCGAGAAGAACCGGTTCGCTTACGGCGATATGGTGGAGCTGGTCTGCTCTGGTTTGCCGAACGTGCTCGATCGATGGCTGAGTCGCATCAAATGCCGCATCAGTCCTTGGAAAATATTTCCCCAAATGCTGCT]


>consensus_6933#2 TGGATCTTCGGCGCGATCGTGATCTCAGCTACGCGAGCCGGAACGGGCTGGTGGACTGTT CACGTGCCACCGGGTTGTGCGTGCCGGTCGTTCTGGGCAAGACGATGTGGTACTATGGGA AGCCGGAGGTAAAAGCCGTTCATGGTCGCCGGTCGATCATACGGTGTCGGGGATGTTGGC GGCGGCGTGCGACATCTATCGCCGACAGTGCACCATTCTGCCGGTGGAAAAGCCGGTCCC GGTGTATAACTTTACGTTCGAGAAGAACCGGTTCGCTTACGGCGATATGGTGGAGCTGGT CTGCTCTGGTTTGCCGAACGTGCTCGATCGATGGCTGAGTCGCATCAAATGCCGCATCAG TCCTTGGAAAATATTTCCCCAAATGCTGCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6933#0      ATCGGTAGATTTCGAAAGTTTGTACTGTGGTTTTAGGGAAGAATCCTGAATAGTGGTTGT 60
consensus_6933#1      ------------------------------------------------------------
consensus_6933#2      ------------------------------------------------------------
                                                                                  

consensus_6933#0      GCAGCAGTTGTGAAAAGTGCAGTACGATGAATACGGAAACGATCGATACGGGACCAGTGT 120
consensus_6933#1      ------------------------------------------------------------
consensus_6933#2      ------------------------------------------------------------
                                                                                  

consensus_6933#0      TGGAGGGTGCACTGAATGTGGCCGAGTTCTATCGTGACGCGACCGTGCTGGTTACCGGTG 180
consensus_6933#1      ------------------------------------------------------------
consensus_6933#2      ------------------------------------------------------------
                                                                                  

consensus_6933#0      GCACCGGCTTTATCGGCAAAGTGTTGGTGGAGAAGCTGCTGCGTTGCTTTGAGGTGAAGA 240
consensus_6933#1      ------------------------------------------------------------
consensus_6933#2      ------------------------------------------------------------
                                                                                  

consensus_6933#0      AGATCTTTCTGCTGATCCGGCGCAAAGCGAACGTCAGTGCGACGGATCGTCTCCAGCAGA 300
consensus_6933#1      ------------------------------------------------------------
consensus_6933#2      ------------------------------------------------------------
                                                                                  

consensus_6933#0      TGCTGGAAGGACCGATCTTCGACACAATCCGTAGCACGGCACCGGATGCGAAGGAGCGCT 360
consensus_6933#1      ------------------------------------------------------------
consensus_6933#2      ------------------------------------------------------------
                                                                                  

consensus_6933#0      TTGCTAAGGTCGTAGCAATGGATGCCGCATTCGATCGCGAGGACATTGTGGATGACGTCG 420
consensus_6933#1      --------------------------------------------GAGGCAAGAATCGCCA 16
consensus_6933#2      ------------------------------------------------------------
                                                                                  

consensus_6933#0      ACAAGACG-AAACTTTGTAACGAAGTGCAGATCGTTTTCCACGTGATGGCCTCGATCCGG 479
consensus_6933#1      CGAGGTTGTAAACTTTGTAACGAAGTGCAGATCGTTTTCCACGTGATGGGCTCGATCCGG 76
consensus_6933#2      ---------------TGGATCTTCGGCGCGATCGTGATCTCAGCTACG----CGAGCCGG 41
                                     ** * *   *    ******  **   *  * *    *** ****

consensus_6933#0      TTCAACGAGGTGCTGGACGAAGCGATCGCGATCAACGTCACCTCAGCGCAGCGGCTGTAC 539
consensus_6933#1      TTCAACGAGGTGCTGGACGAAGCGATCGCGATCAACGTCACCTCAG-GCAGCGGNTGTAC 135
consensus_6933#2      ---AACGGGCTGGTGGAC----TGTTCACG-----TGCCACCGGGTTGTGCGTGCCGGTC 89
                         **** * ** *****     * ** **      * ****     *     *  *  *

consensus_6933#0      GCCCTCGCCAGCTCGATGGCGGAACTGCGCTCGATCGTGCACGTGTCGACGTTCTACGCG 599
consensus_6933#1      GCCCTCGCCAGCTCGATGGCGGAACTGCGCTCGATCGTGCACGTGTCGACGTTCTANGCG 195
consensus_6933#2      GTTCTGGGCAAGACGATG-TGGTACTATGGGAAGCCGGAG----GTAAAAGCCGTTCATG 144
                      *  ** * **   *****  ** ***  *      **       **  * *   *    *

consensus_6933#0      AACTGTGATCGGCCATACATCGAGGAGCGCATCTACGACGACGTACCGTACGGAGGGCTC 659
consensus_6933#1      AACTGTGATCGGC-ATACATCGAGGAGCGCATCTACGACGACGTACCGTACGGAGGGCTC 254
consensus_6933#2      GTCGCCGGTCGATCATACGGTGTCGGGGATGTTGGCGGCGGCGTGCGACATCTATCGCCG 204
                        *   * ***   ****   *  * *    *   ** ** *** *   *   *  **  

consensus_6933#0      G-AGCACATCCAGCTATTCTTCAAGA-----GCCTCAGCGTGGAGGAGAAGGAACGCATG 713
consensus_6933#1      G-AGCACATCCAG-TATTCTTCAAGA-----GCCTCAGCGTGGAGGAGAAGGAACGCATG 307
consensus_6933#2      ACAGTGCACCATTCTGCCGGTGGAAAAGCCGGTCCCGGTGTATAACTTTACGTTCGAGAA 264
                        **  ** *    *     *  * *     * * * * **  *     * *  **    

consensus_6933#0      ACGCGGGTGGTGCTGGGC-AATATGCCCAACTCGTACGTGTTTAGCAAA--AAGTGTGCG 770
consensus_6933#1      ACGCGGGTGGTGCTGGGCCAATATGNCCAA-TCGTACGTGTTTAGCAAA--AAGTGTGCG 364
consensus_6933#2      GAACCGGTTCGCTTACGGCGATATGGTGGAGCTGGTCTGCTCTGGTTTGCCGAACGTGCT 324
                         * ***     *  *   *****    *   *  *   * * *       *  **** 

consensus_6933#0      GAGGCCATGGTT--GGCCGC--GAGTTTGGCCATCTGCCGATTGGGATCTTCCGGCCGCC 826
consensus_6933#1      GAGGCCATGGTTTGGGCCGCCGAGGTTTTGGCATCTGCCGATTGGGATCTTCCGGCCGCC 424
consensus_6933#2      CGATCGATGGCT-GAGTCGCATCAAATGCCGCATCAGTCCTTGGAAAATATTT--CCCCA 381
                          * **** *   * ***      *    **** * *  * *  *   *    ** * 

consensus_6933#0      GATCGTGATCTCGAGCTACCGCGAGCCGGAACCGGGCTGGGTGGAC-------------- 872
consensus_6933#1      GATCGTGATCTCGAGCTACCGGGAGCCGGAACCGGGCTGGGTGGACTGTTTCCACGGTGC 484
consensus_6933#2      AATGCTGCT--------------------------------------------------- 390
                       **  ** *                                                   

consensus_6933#0      -----------------------------------------------------------
consensus_6933#1      CACCGGGTTGTAGCGTGCCGGTCAGTCCTGGGCAAGACGATGTGGTACTATGGGAAGCC 543
consensus_6933#2      -----------------------------------------------------------
                                                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)