These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6935#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 763 fasta sequence [GGCCAGTTGTCGCACGAAGAAGAAGCAGCAAGGAAAGCGGAAAAAAGCAAGAATAAGTATGCGTAGTGCAATCTGTGATTTTTCTCTGCGCACAGCAGCATAAGCGTCGTAAGCGTGTGTGTGTGTGTGTGTTTGTGTGGAACGATTTGCTTGATTTGAAATCATCTCCTCCACCCGACAGCATCGCAAGCAGCGCACACACACAAAACCCCCCCTTCGAACTGTGATTATGTGATTATGATATGCGCTCGAATCGAATTGTTTTGTTTGTGAATGGAGAAGAAGAAGAGGAAGAAGAAGAATACGAAGCAGAAGAAAGCCAAATATGCCATCGAACCGGANAGCTGGGGAAAGGAAGTTCTCTTGGCGAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTTATTTGGCGGGCCCATCGCGTGTGGCTCCCCGTGGTCGTGGGTGGTGGTGGTGGTGGTGGTGGTACGTGGAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCACGGGCAGCCGCTATCTCNCTCTCTGCATCGTTATCATCATCGTAGTCGTCACCATCATCGCCTCCCGTNCCCACGTCGGTCGCAAAAGGGGTCGAGCGATGCGGGCAAANCCCTTCGTTCGGGGCTTCGNAAAGGGAATAACTCCCCCCCGGGCAGCCAGGCAGGACACCNAGGCATTGGAGGCNAAANCAATTGGGGGGAAGGANGGTTGAGCNNGCCGGATAGATCTGGGGTTCTCA] [+] EMBL BX467601 [GGCCAGTTGTCGCACGAAGAAGAAGCAGCAAGGAAAGCGGAAAAAAGCAAGAATAAGTATGCGTAGTGCAATCTGTGATTTTTCTCTGCGCACAGCAGCATAAGCGTCGTAAGCGTGTGTGTGTGTGTGTGTTTGTGTGGAACGATTTGCTTGATTTGAAATCATCTCCTCCACCCGACAGCATCGCAAGCAGCGCACACACACAAAACCCCCCCTTCGAACTGTGATTATGTGATTATGATATGCGCTCGAATCGAATTGTTTTGTTTGTGAATGGAGAAGAAGAAGAGGAAGAAGAAGAATACGAAGCAGAAGAAAGCCAAATATGCCATCGAACCGGANAGCTGGGGAAAGGAAGTTCTCTTGGCGAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTTATTTGGCGGGCCCATCGCGTGTGGCTCCCCGTGGTCGTGGGTGGTGGTGGTGGTGGTGGTGGTACGTGGAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCACGGGCAGCCGCTATCTCNCTCTCTGCATCGTTATCATCATCGTAGTCGTCACCATCATCGCCTCCCGTNCCCACGTCGGTCGCAAAAGGGGTCGAGCGATGCGGGCAAANCCCTTCGTTCGGGGCTTCGNAAAGGGAATAACTCCCCCCCGGGCAGCCAGGCAGGACACCNAGGCATTGGAGGCNAAANCAATTGGGGGGAAGGANGGTTGAGCNNGCCGGATAGATCTGGGGTTCTCA] consensusID : consensus_6935#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 641 fasta sequence [CCGCGGACGCGTGGGTGTTTGTGTGGAACGATTTGCTTGATTTGAAATCATCTCCTCCACCCGACAGCATCGCAAGCAGCGCACACACACAAAACCCCCCCTTCGAACTGTGATTATGTGATTATGATATGCGCTCGAATCGAATTGTTTTGTTTGTGAATGGAGAAGAAGAAGAGGAAGAAGAAGAATACGAAGCAGAAGAAAGCCAAAATGCCATCGAACCGGAAGCTGGGGAAAGGAAGTTCTCTTGGGAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTTTTTGGCGGGCCCATCGCGTGTGGCTCCCCGTGGTCGTGGTGGGGTGGGTGGGTGGTTGTTGATTATGAAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCACGGGCAGCCGCTATCTCTCTCTCTGCATCGTTAATCATCATCGTAGTCGTCACCATCATCGCCTCCCCTCCCCACGTCGTCGCAAAAGGTCGGCGTGGGCAACCCTCGTCGGCTCGAAGGATACTCCCCCGGCAGCAGCAGCACCAGCTGAGCAAACATGGGGGAGGA-GTTGGGGGCGGTGATCTGCGTTCTTCAAATCATCCTGTGATCGTCCCTCCGTTTGTTTTCTCCGTTT] [+] EMBL BM591247 [CCGCGGACGCGTGGGTGTTTGTGTGGAACGATTTGCTTGATTTGAAATCATCTCCTCCACCCGACAGCATCGCAAGCAGCGCACACACACAAAACCCCCCCTTCGAACTGTGATTATGTGATTATGATATGCGCTCGAATCGAATTGTTTTGTTTGTGAATGGAGAAGAAGAAGAGGAAGAAGAAGAATACGAAGCAGAAGAAAGCCAAAATGCCATCGAACCGGAAGCTGGGGAAAGGAAGTTCTCTTGGGAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTTTTTGGCGGGCCCATCGCGTGTGGCTCCCCGTGGTCGTGGTGGGGTGGGTGGGTGGTTGTTGATTATGAAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCACGGGCAGCCGCTATCTCTCTCTCTGCATCGTTAATCATCATCGTAGTCGTCACCATCATCGCCTCCCCTCCCCACGTCGTCGCAAAAGGTCGGCGTGGGCAACCCTCGTCGGCTCGAAGGATACTCCCCCGGCAGCAGCAGCACCAGCTGAGCAAACATGGGGGAGGA GTTGGGGGCGGTGATCTGCGTTC ] [+] EMBL BM644034 [ ccgATCGTAGTCGTCACCATCATCGCCTCCCCTCCCCACGTCGTCGCAAAAGGTCGGCGTGGGCAACCCTCGTCGGCTCGAAGGATACTCCCCCGGCAGCAG CAGCTGAGCAAAAATGGGGGAGGAGGTTGGGGGCGGTGATCTGCGTTCTTCAAATCATCCTGTGATCGTCCCTCCGTTTGTTTTCTCCGTTT] consensusID : consensus_6935#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence [CAGAATCGCACGAGGTNATAGTGCAATCTGTGATTTTTCTCTGCGCACAGCAGCTATAAGCGTCGTAAGTGTGTGTGTGTGTGTTTGTGTGGAACGATTTGCTTGATTTGAAATCATCTCCTCCACCCGACAGCATCGCAAGCAGCGCGCACACACACACACAACACCCCCCCCCTTCGAACTGTGATTATGTGATTATGATATGCGCTCGAATCGAATTGTTTTGTTTGTGAATGAAGAAGAAGAAGAGGAATAAGAAGAATACGAAGCAGAAGAAAGCCAAAATGCCATCGAACCGGAAGCTGGAGAAAGGAAGTTCTCTTGGGAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTTTTTGGCGGGCCCATCGCGTGTGGCTCCCCGTGGTCGTGGGTGGTGGTGGTGGTGGTGGTGGTAGTGGAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCA] [+] EMBL AL697015 [CAGAATCGCACGAGGTNATAGTGCAATCTGTGATTTTTCTCTGCGCACAGCAGCTATAAGCGTCGTAAGTGTGTGTGTGTGTGTTTGTGTGGAACGATTTGCTTGATTTGAAATCATCTCCTCCACCCGACAGCATCGCAAGCAGCGCGCACACACACACACAACACCCCCCCCCTTCGAACTGTGATTATGTGATTATGATATGCGCTCGAATCGAATTGTTTTGTTTGTGAATGAAGAAGAAGAAGAGGAATAAGAAGAATACGAAGCAGAAGAAAGCCAAAATGCCATCGAACCGGAAGCTGGAGAAAGGAAGTTCTCTTGGGAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTTTTTGGCGGGCCCATCGCGTGTGGCTCCCCGTGGTCGTGGGTGGTGGTGGTGGTGGTGGTGGTAGTGGAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCA] consensusID : consensus_6935#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [ATCCGCACGAGNGTCAAAATGCCATCGAACCGGAAGCTGGGGAAAGGAAGTTCTCCTGAGAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTTTTTGGCGGGCCCATCGCGTGTGGCTCCTCGTGGTCGTGGGTGGTGGTGGTGGTAGTGGAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCACGGGCAGCCGCTATCTCTCTCTCTGCATCGTTAATCATCATCGTAGTCGTCACCATCATCGCCTCCCCTCCCCACGTCGTCGCAAAAGGTCGGCGTGGGCAACCCTCGTCGGCTCGAAGGATACTCCCCCGGCAGCAGCAGCACCAGCTGAGCAAACATGGGGGANGAGGTTGGGGGCGGTGATCTGCGTTCTTCAAATCATCCTGCTGATCGTCCCTCCGGTTTGTTTTCTCCGNTTTGGACAAACCCCCGGCTCATTGTCGGCTCATAC] [+] EMBL BX466091 [ATCCGCACGAGNGTCAAAATGCCATCGAACCGGAAGCTGGGGAAAGGAAGTTCTCCTGAGAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTTTTTGGCGGGCCCATCGCGTGTGGCTCCTCGTGGTCGTGGGTGGTGGTGGTGGTAGTGGAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCACGGGCAGCCGCTATCTCTCTCTCTGCATCGTTAATCATCATCGTAGTCGTCACCATCATCGCCTCCCCTCCCCACGTCGTCGCAAAAGGTCGGCGTGGGCAACCCTCGTCGGCTCGAAGGATACTCCCCCGGCAGCAGCAGCACCAGCTGAGCAAACATGGGGGANGAGGTTGGGGGCGGTGATCTGCGTTCTTCAAATCATCCTGCTGATCGTCCCTCCGGTTTGTTTTCTCCGNTTTGGACAAACCCCCGGCTCATTGTCGGCTCATAC] consensusID : consensus_6935#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 411 fasta sequence [CGCCCGAGGTTAAATTTGAAATCATCTCCTCCACCCGACAGCATCGCAAGCAGCGCACACGCACACACAAAACCCCCCCCTTCGAACTGTGATTATGTGATTATGATATGCGCTCGAATCGAATTGTTTGTTTGTGAATGAAGAAGAAGAGGAAGAAGAAGAAGAATACGAAGCAGAAGAAAGCCAAAATGCCATCGAACCGGAAGCTGGGGAAAGGAAGTTCTCCTGAGAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTTTTTGGCGGGCCCATCGCGTGTGGCTCCTCGTGGTCGTGGGTGGTGGTGGTGGTACGTGGAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCACGGGCAGCCGCTATCTCTCTCTCTGCATCGTTAATC] [+] EMBL AL933528 [CGCCCGAGGTTAAATTTGAAATCATCTCCTCCACCCGACAGCATCGCAAGCAGCGCACACGCACACACAAAACCCCCCCCTTCGAACTGTGATTATGTGATTATGATATGCGCTCGAATCGAATTGTTTGTTTGTGAATGAAGAAGAAGAGGAAGAAGAAGAAGAATACGAAGCAGAAGAAAGCCAAAATGCCATCGAACCGGAAGCTGGGGAAAGGAAGTTCTCCTGAGAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTTTTTGGCGGGCCCATCGCGTGTGGCTCCTCGTGGTCGTGGGTGGTGGTGGTGGTACGTGGAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCACGGGCAGCCGCTATCTCTCTCTCTGCATCGTTAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6935#0 GGCCAGTTGTCGCACGAAGAAGAAGCAGCAAGGAAAGCGGAAAAAAGCAAGAATAAGTAT 60 consensus_6935#2 ---------------------------------------------CAGAATCGCACGAGG 15 consensus_6935#4 ------------------------------------------------------------ consensus_6935#1 ------------------------------------------------------------ consensus_6935#3 ------------------------------------------------------------ consensus_6935#0 GCGTAGTGCAATCTGTGATTTTTCTCTGCGCACAGCAGC-ATAAGCGTCGTAAGCGTGTG 119 consensus_6935#2 TNATAGTGCAATCTGTGATTTTTCTCTGCGCACAGCAGCTATAAGCGTCGTAAG----TG 71 consensus_6935#4 ------------------------------------------------------------ consensus_6935#1 -------------------------------------------------------CCGCG 5 consensus_6935#3 ------------------------------------------------------------ consensus_6935#0 TGTGTGTGTGTGTTTGTGTGGAACGATTTGCTTGATTTGAAATCATCTCCTCCACCCGAC 179 consensus_6935#2 TGTGTGTGTGTGTTTGTGTGGAACGATTTGCTTGATTTGAAATCATCTCCTCCACCCGAC 131 consensus_6935#4 -------------------CGCCCGAG--GTTAAATTTGAAATCATCTCCTCCACCCGAC 39 consensus_6935#1 GACGCGTGGGTGTTTGTGTGGAACGATTTGCTTGATTTGAAATCATCTCCTCCACCCGAC 65 consensus_6935#3 ------------------------------------------------------------ consensus_6935#0 AGCATCGCAAGCAGCGCACACACACAAAA--------CCCCCCCTTCGAACTGTGATTAT 231 consensus_6935#2 AGCATCGCAAGCAGCGCGCACACACACACACAACACCCCCCCCCTTCGAACTGTGATTAT 191 consensus_6935#4 AGCATCGCAAGCAGCGCACACGCACACACAAAAC---CCCCCCCTTCGAACTGTGATTAT 96 consensus_6935#1 AGCATCGCAAGCAGCGCACACACACAAAA--------CCCCCCCTTCGAACTGTGATTAT 117 consensus_6935#3 ------------------------------------------------------------ consensus_6935#0 GTGATTATGATATGCGCTCGAATCGAATTGTTTTGTTTGTGAATGGAGAAGAAGAAGAGG 291 consensus_6935#2 GTGATTATGATATGCGCTCGAATCGAATTGTTTTGTTTGTGAATGAAGAAGAAGAAGAGG 251 consensus_6935#4 GTGATTATGATATGCGCTCGAATCGAATTGTTT-GTTTGTGAATGAAGAAGAAGAGGAAG 155 consensus_6935#1 GTGATTATGATATGCGCTCGAATCGAATTGTTTTGTTTGTGAATGGAGAAGAAGAAGAGG 177 consensus_6935#3 ------------------------------------------------------------ consensus_6935#0 AAGAAGAAGAATACGAAGCAGAAGAAAGCCAAATATGCCATCGAACCGGANAGCTGGGGA 351 consensus_6935#2 AATAAGAAGAATACGAAGCAGAAGAAAGCCAAA-ATGCCATCGAACCGGAA-GCTGGAGA 309 consensus_6935#4 AAGAAGAAGAATACGAAGCAGAAGAAAGCCAAA-ATGCCATCGAACCGGAA-GCTGGGGA 213 consensus_6935#1 AAGAAGAAGAATACGAAGCAGAAGAAAGCCAAA-ATGCCATCGAACCGGAA-GCTGGGGA 235 consensus_6935#3 ---------------ATCCGCACGAGNGTCAAA-ATGCCATCGAACCGGAA-GCTGGGGA 43 * * * ** * **** **************** ***** ** consensus_6935#0 AAGGAAGTTCTCTTGGCGAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTTAT 411 consensus_6935#2 AAGGAAGTTCTCTTGG-GAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTT-T 367 consensus_6935#4 AAGGAAGTTCTCCTGA-GAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTT-T 271 consensus_6935#1 AAGGAAGTTCTCTTGG-GAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTT-T 293 consensus_6935#3 AAGGAAGTTCTCCTGA-GAGAGCGCGAAGCAACGTGTGGTGTTGCAATGTGGACTGTT-T 101 ************ ** ***************************************** * consensus_6935#0 TTGGCGGGCCCATCGCGTGTGGCTCCCCGTGGTCGTGGGTGGTGGTGGTGGTGGTGGTGG 471 consensus_6935#2 TTGGCGGGCCCATCGCGTGTGGCTCCCCGTGGTCGTGGGTGGTGGTGGTGGTGGTGGTGG 427 consensus_6935#4 TTGGCGGGCCCATCGCGTGTGGCTCCTCGTGGTCGTGGGTGGTGGTGGTGGT-------- 323 consensus_6935#1 TTGGCGGGCCCATCGCGTGTGGCTCCCCGTGGTCGTGGTGGGGTGGGTGGGTGGTTGTTG 353 consensus_6935#3 TTGGCGGGCCCATCGCGTGTGGCTCCTCGTGGTCGTGGGTGGTGGTGGTGGTA------- 154 ************************** *********** ** * * *** consensus_6935#0 TACGTGGAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCACGGGCAG 531 consensus_6935#2 TA-GTGGAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCA------- 479 consensus_6935#4 -ACGTGGAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCACGGGCAG 382 consensus_6935#1 ATTATGAAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCACGGGCAG 413 consensus_6935#3 ---GTGGAACGTCTGCAACGTCTTCAAATCAATTGGTGGAGAGAAGAAGAGCACGGGCAG 211 ** ********************************************** consensus_6935#0 CCGCTATCTCNCTCTCTGCATCGTTATCA-TCATCGTAGTCGTCACCATCATCGCCTCCC 590 consensus_6935#2 ------------------------------------------------------------ consensus_6935#4 CCGCTATCTCTCTCTCTGCATCGTTAATC------------------------------- 411 consensus_6935#1 CCGCTATCTCTCTCTCTGCATCGTTAATCATCATCGTAGTCGTCACCATCATCGCCTCCC 473 consensus_6935#3 CCGCTATCTCTCTCTCTGCATCGTTAATCATCATCGTAGTCGTCACCATCATCGCCTCCC 271 consensus_6935#0 GTNCCCACGTCGGTCGCAAAAGGGGTCGAGCGATGCGGGCAAANCCCTTCGTTCGGGGCT 650 consensus_6935#2 ------------------------------------------------------------ consensus_6935#4 ------------------------------------------------------------ consensus_6935#1 CTCCCCACGTCGTCGCAAAAGGTCGGCGTGGGCAACCCTCG--TCGGCTCGAAGGATACT 531 consensus_6935#3 CTCCCCACGTCGTCGCAAAAGGTCGGCGTGGGCAACCCTCGTCGGCTCGAAGGATACTCC 331 consensus_6935#0 TCGNAAAGGGAATAACTCCCCCCCGGGCAGCCAGGCAGGACACCNAGGCATTGGAGGCNA 710 consensus_6935#2 ------------------------------------------------------------ consensus_6935#4 ------------------------------------------------------------ consensus_6935#1 CCCCCGGCAGCAGCAGCACCAGCTGAGCAAACATGGGGGAGGAGTTGGGGGCGGTGATCT 591 consensus_6935#3 CCCGGCAGCAGCAGCACCAGCTGAGCAAACATGGGGGANGAGGTTGGGGGCGGTGATCTG 391 consensus_6935#0 AANCAATTGGGGGGAAGGANGGTTGAGCNNGCCGGATAGATCTGGGGTTCTCA------- 763 consensus_6935#2 ------------------------------------------------------------ consensus_6935#4 ------------------------------------------------------------ consensus_6935#1 GCGTTCTTCAAATCATCCTGTGATCGTCCCTCCGTTTGTTTTCTCCGTTT---------- 641 consensus_6935#3 CGTTCTTCAAATCATCCTGCTGATCGTCCCTCCGGTTTGTTTTCTCCGNTTTGGACAAAC 451 consensus_6935#0 ------------------------ consensus_6935#2 ------------------------ consensus_6935#4 ------------------------ consensus_6935#1 ------------------------ consensus_6935#3 CCCCGGCTCATTGTCGGCTCATAC 475 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||