cluster # 6940

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Anopheles gambiae
cluster # 6940 cluster # 6940 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6940#0 length = 1428 sequences # 5

consensus_6940#1 length = 138 sequences # 1

consensusID : consensus_6940#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1428
fasta sequence

                              [GTCGGTGCAATGATTATAGTGATCGTCAAAGGCACAGCAGACGTCGGTGGGCTCAGCGTAGTGATCGAGAGGAACTCTGCCGGTGGACGATTTGAAGGCCCCGATTTCAATCTAGATCCTACGGCGCGCAACACCTTCTGGACGCTGCTGATCGGTGGTACCTTCTTCTGGACGTCGACGAACTCGATCAACCAGAACATGATGCAGCGCTACCTGTCGCTACCTTCGCTAGGATCTGCCCGTAAGGCGCTGGTGCTGTTCCTCGTCGGTACGACCACACTGCTCGCCATGTGCTGCTACAACGGACTGCTTATCTTTGCGATGTACCACGACTGCGATCCCCTGTCGACTGGATTGGCAAAAGCTAAGGATCAGCTAGTGCCACTGTTGGTGATGGAGGTGCTTGGCGAATATCCGGGCCTGGCC-GGTTTG-TTGTGGCCGGTATATTTAGTGCAGCGCTGAGCTCCCTCTCCACCGCACTCAATTCGCTGTCCGCCATTGTGCTGGAGGATTTCTGCAAACCGTTCGTGTCGAAGCCGCTGACGGAAACGCAAACACGCTACATTATGCGCTTTACCGTGCTGGCGTTTGGTGCACTGGCCGTTATGATGGTGATCGTTGTGGAGAAGATGGGTGCCGTACTGCAGCTGTCAATGAGCTTGGGCCCGGTCACACTCGG-ACCA-CTGTTTGGGCTGTTCCTGATGGGTTTCTTCTTCCCGCGCATTAATGGCAGTTGTGCCATTTTGGGAACAACGGCAGGATTACTGCTGATGTCGTACATTGTGATACGGTCACAGATATCGATCGCGCTGAAGGAAATTGTGTTCGCCGAGAAGCCGGTCACCGTGGAAGGCTGTCTGTACGAGTTTACGCCGAAAAATGGTACACTCTTTGAAGCAGACTCAACTCCTGGGGAGAAGTCACTGCATCATGTGTCCTTCCTCTACTACACCATGATCGGCTCGGTAGTGCCGACGATTGTGGGCTATCTGGCCTCGTTCGTTTTACCGCGCTCGAAAACCGACGACATTGATCCGCTGCTGTTGGCACCGTTTCTGCGCCGTTTCTACCGCGCCCGGGACACTAAGGCTAATCACATGACAGAGGTGTT-GCACGAGTTCGAAACCAAAGAAATACAGCTGTAAGACGGCTGGGCGGCTGCATCTATGACGGCAGCACGCGGTACAAAGCCGAGCGCCACTATCTTTGTACAGTAATTGTTATGATAAAAAAATTNAAGGGAAGAAGGAGCATGGGGATGTAGTCTGGTAGGTACAAGGTATGGGGAAAGTATNAGGGCAATGACCCTGGCANACTNNATNGACGACTACACGGGACATTTCCCATCAAAGGAACAGNACGGACNGGCNNAACAAAACANGGGCATGTCGACGGACCGCAAAGNTTATTCCCCTTTAGCTNGAAGGT]

[+] EMBL BX606537             [GTCGGTGCAATGATTATAGTGATCGTCAAAGGCACAGCAGACGTCGGTGGGCTCAGCGTAGTGATCGAGAGGAACTCTGCCGGTGGACGATTTGAAGGCCCCGATTTCAATCTAGATCCTACGGCGCGCAACACCTTCTGGACGCTGCTGATCGGTGGTACCTTCTTCTGGACGTCGACGAACTCGATCAACCAGAACATGATGCAGCGCTACCTGTCGCTACCTTCGCTAGGATCTGCCCGTAAGGCGCTGGTGCTGTTCCTCGTCGGTACGACCACACTGCTCGCCATGTGCTGCTACAACGGACTGCTTATCTTTGCGATGTACCACGACTGCGATCCCCTGTCGACTGGATTGGCAAAAGCTAAGGATCAGCTAGTGCCACTGTTGGTGATGGAGGTGCTTGGCGAATATCCGGGCCTGGCCGGGTTTG TTGTGGCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX620430             [                                                                                                                                                                                                                                                                                                                                                       taTCGACTGGATTGGCAAAGGCTAAGGATCAGCTAGTGCCACTGTTGGTGATGGAGGTGCTTGGCGAATATCCGGGCCTGGCC GGTTTGTTTGTGGCCGGTATATTTAGTGCAGCGCTGAGCTCCCTCTCCACCGCACTCAATTCGCTGTCCGCCATTGTGCTGGAGGATTTCTGCAAACCGTTCGTGTCGAAGCCGCTGACGGAAACGCAAACACGCTACATTATGCGCTTTACCGTGCTGGCGTTTGGTGCACTGGCCGTTATGATGGTGATCGTTGTGGAGAAGATGGGTGCCGTACTGCAGCTGTCAATGAGCTTGGGCCCGGTCACACTCGG ACCA CTGTTTGGGCTGTTCCTGATGGGTTTCTTCTTCCCGCGCATTAATGGCAGTTGTGCCATTTTGGGAACAACGGCAGGATTACTGCTGATGTCGTACATTGTGATACGGTCACAGATATCGATCGCGCTGAAGGAAATTGTGTTCGCCGAGAAGCCGGTCACCGTGGAAGGCTGTCTGTACGAGTTTACGCCGAAAAATGGTACACTCTTTGAAGCAGACTCAACTCCTGGGGAGAAGTCACTGCATCATGTGTCCTTCCTCTACTACACCATGATCGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CNS09ARX             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CGCTACATTATGCGCTTCACCGTGCTGGCGTTTGGTGCACTAGCCGTTATGATGGTGATCGTGGTGGAGAAGATGGGTGCCGTACTGCAGCTGTCGATGAGCTTGGGCCCGGTCACACTCGG ACCA CTGTTTGGGCTGTTCCTGATGGGTTTCTTCTTCCCGCGCATTAATGGCAGTTGTGCCATTTTGGGAACAACGGCAGGATTACTGCTGATGTCGTACATTGTGATACGGTCACAGATATCGATCGCGCTGAAGGAAATTGTGTTCGCCGAGAAGCCGGTCACCGTGGAAGGCTGTCTGTACGAGTTCACGCCGAAAAATGGTACGCTCTTTGAAGCGGACTCAACGCCCGGCGAGAAGTCACTGCATCATGTGTCCTTCCTCTACTACACCATGATCGGCTCGGTAGTGCCGACGATTGTGGGCTATCTGGCCTCGTTCGTTTTACCGCGCTCGAAAACCGACGACATTGATCCGCTGCTGTTGGCACCGTTTCTGCGCCGTTTCTACCGCGCCCGGGACACTAAGGCTAATCACATGACAGAGGTGTT GCACGAGTTCGAAACCAAAGAAATACAGCTGTAAGACGGCTGGGCGGCTGCATCTATGACGGCAGCACGCGGTACAAAGCCGAGCGCCACTATCTTTGTACAGTAATTGTTATGATAAAAAA                                                                                                                                                                                                   ]
[+] EMBL BX467556             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             gccaagaaTCGGCACGAGGTGTTTGGGCTGTTCCTGATGGGTTTCTTCTTCCCGCGCATTAATGGCAGTTGTGCCATTTTGGGAACAACGGCAGGATTAGTGCTGATGTCGTACATTGTGATACGGTCACAGATATCGATCGCGCTGAAGGAAATTGTGTTCGCCGAGAAGCCGGTCACCGTGGAAGGCTGTCTGTACGAGTTTACGCCGAAAAATGGTACACTCTTTGAAGCAGACTCAACTCCTGGGGAGAAGTCACTGCATCATGTGTCCTTCCTCTACTATACCATGATCGGCTCGGTAGTGCCGACGATTGTGGGCTATCTGGCCTCGTTCGTTTTACCGCGCTCGAAAACCGACGACATTGATCCGCTGCTGTTGGCACCGTTTCTGCGCCGTTTCTACCGCGCCCGGGACACTAAGGCTAATCACATGACAGAGGTGTTGGCACGAGTTCGAAACCAAAGACATACAGCTGTAAGACGGCTGGGCGGCTGCATCTGTGACGGCAGCACGCGGTACAAAGCCGAGCGCCACTATCTTTGTACAGTAATTGTTCGGATTAGAGTATTNAAGGGAAGAAGGAGCATGGGGATGTAGTCTGGTAGGTACAAGGTATGGGGAAAGTATNAGGGCAATGACCCTGGCANACTNNATNGACGACTACACGGGACATTTCCCATCAAAGGAACAGNACGGACNGGCNNAACAAAACANGGGCATGTCGACGGACCGCAAAGNTTATTCCCCTTTAGCTNGAAGGT]
[+] EMBL BX608810             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TATCTGGCCTCGTTCGTTTTACCGCGCTCGAAAACCGACGACATTGATCCGCTGCTGTTGGCACCGTTTCTGCGCCGTTTCTACCGCGCCCGGGACACTAAGGCTAATCACATGACAAAGGTGTT GCACGAGTTCca                                                                                                                                                                                                                                                                                                                 ]




>consensus_6940#0
GTCGGTGCAATGATTATAGTGATCGTCAAAGGCACAGCAGACGTCGGTGGGCTCAGCGTA
GTGATCGAGAGGAACTCTGCCGGTGGACGATTTGAAGGCCCCGATTTCAATCTAGATCCT
ACGGCGCGCAACACCTTCTGGACGCTGCTGATCGGTGGTACCTTCTTCTGGACGTCGACG
AACTCGATCAACCAGAACATGATGCAGCGCTACCTGTCGCTACCTTCGCTAGGATCTGCC
CGTAAGGCGCTGGTGCTGTTCCTCGTCGGTACGACCACACTGCTCGCCATGTGCTGCTAC
AACGGACTGCTTATCTTTGCGATGTACCACGACTGCGATCCCCTGTCGACTGGATTGGCA
AAAGCTAAGGATCAGCTAGTGCCACTGTTGGTGATGGAGGTGCTTGGCGAATATCCGGGC
CTGGCCGGTTTGTTGTGGCCGGTATATTTAGTGCAGCGCTGAGCTCCCTCTCCACCGCAC
TCAATTCGCTGTCCGCCATTGTGCTGGAGGATTTCTGCAAACCGTTCGTGTCGAAGCCGC
TGACGGAAACGCAAACACGCTACATTATGCGCTTTACCGTGCTGGCGTTTGGTGCACTGG
CCGTTATGATGGTGATCGTTGTGGAGAAGATGGGTGCCGTACTGCAGCTGTCAATGAGCT
TGGGCCCGGTCACACTCGGACCACTGTTTGGGCTGTTCCTGATGGGTTTCTTCTTCCCGC
GCATTAATGGCAGTTGTGCCATTTTGGGAACAACGGCAGGATTACTGCTGATGTCGTACA
TTGTGATACGGTCACAGATATCGATCGCGCTGAAGGAAATTGTGTTCGCCGAGAAGCCGG
TCACCGTGGAAGGCTGTCTGTACGAGTTTACGCCGAAAAATGGTACACTCTTTGAAGCAG
ACTCAACTCCTGGGGAGAAGTCACTGCATCATGTGTCCTTCCTCTACTACACCATGATCG
GCTCGGTAGTGCCGACGATTGTGGGCTATCTGGCCTCGTTCGTTTTACCGCGCTCGAAAA
CCGACGACATTGATCCGCTGCTGTTGGCACCGTTTCTGCGCCGTTTCTACCGCGCCCGGG
ACACTAAGGCTAATCACATGACAGAGGTGTTGCACGAGTTCGAAACCAAAGAAATACAGC
TGTAAGACGGCTGGGCGGCTGCATCTATGACGGCAGCACGCGGTACAAAGCCGAGCGCCA
CTATCTTTGTACAGTAATTGTTATGATAAAAAAATTNAAGGGAAGAAGGAGCATGGGGAT
GTAGTCTGGTAGGTACAAGGTATGGGGAAAGTATNAGGGCAATGACCCTGGCANACTNNA
TNGACGACTACACGGGACATTTCCCATCAAAGGAACAGNACGGACNGGCNNAACAAAACA
NGGGCATGTCGACGGACCGCAAAGNTTATTCCCCTTTAGCTNGAAGGT

consensusID : consensus_6940#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 138
fasta sequence

                              [GGCAGATTGCCGATGNATAACTNGATCACCAGAACATGATGCAGCGCTACCTGGTCGCTACTTCGCTAGGATCTGNCCGTAAGGCGCTGGTGCTGTTCCTCGTCGGTACGACACACTGGTCGCATGTGCTGGTACAAC]

[+] EMBL AL697108             [GGCAGATTGCCGATGNATAACTNGATCACCAGAACATGATGCAGCGCTACCTGGTCGCTACTTCGCTAGGATCTGNCCGTAAGGCGCTGGTGCTGTTCCTCGTCGGTACGACACACTGGTCGCATGTGCTGGTACAAC]




>consensus_6940#1
GGCAGATTGCCGATGNATAACTNGATCACCAGAACATGATGCAGCGCTACCTGGTCGCTA
CTTCGCTAGGATCTGNCCGTAAGGCGCTGGTGCTGTTCCTCGTCGGTACGACACACTGGT
CGCATGTGCTGGTACAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6940#0      GTCGGTGCAATGATTATAGTGATCGTCAAAGGCACAGCAGACGTCGGTGGGCTCAGCGTA 60
consensus_6940#1      ------------------------------------------------------------
                                                                                  

consensus_6940#0      GTGATCGAGAGGAACTCTGCCGGTGGACGATTTGAAGGCCCCGATTTCAATCTAGATCCT 120
consensus_6940#1      ------------------------------------------------------------
                                                                                  

consensus_6940#0      ACGGCGCGCAACACCTTCTGGACGCTGCTGATCGGTGGTACCTTCTTCTGGACGTCGACG 180
consensus_6940#1      ------------------------------------------GGCAGATTGCCGATGNAT 18
                                                                  *   * * **  *   

consensus_6940#0      AACTCGATCAACCAGAACATGATGCAGCGCTACCTG-TCGCTACCTTCGCTAGGATCTGC 239
consensus_6940#1      AACTNGATCA-CCAGAACATGATGCAGCGCTACCTGGTCGCTAC-TTCGCTAGGATCTGN 76
                      **** ***** ************************* ******* ************** 

consensus_6940#0      CCGTAAGGCGCTGGTGCTGTTCCTCGTCGGTACGACCACACTGCTCGCCATGTGCTGCTA 299
consensus_6940#1      CCGTAAGGCGCTGGTGCTGTTCCTCGTCGGTACGAC-ACACTGGTCGC-ATGTGCTGGTA 134
                      ************************************ ****** **** ******** **

consensus_6940#0      CAACGGACTGCTTATCTTTGCGATGTACCACGACTGCGATCCCCTGTCGACTGGATTGGC 359
consensus_6940#1      CAAC-------------------------------------------------------- 138
                      ****                                                        

consensus_6940#0      AAAAGCTAAGGATCAGCTAGTGCCACTGTTGGTGATGGAGGTGCTTGGCGAATATCCGGG 419
consensus_6940#1      ------------------------------------------------------------
                                                                                  

consensus_6940#0      CCTGGCCGGTTTGTTGTGGCCGGTATATTTAGTGCAGCGCTGAGCTCCCTCTCCACCGCA 479
consensus_6940#1      ------------------------------------------------------------
                                                                                  

consensus_6940#0      CTCAATTCGCTGTCCGCCATTGTGCTGGAGGATTTCTGCAAACCGTTCGTGTCGAAGCCG 539
consensus_6940#1      ------------------------------------------------------------
                                                                                  

consensus_6940#0      CTGACGGAAACGCAAACACGCTACATTATGCGCTTTACCGTGCTGGCGTTTGGTGCACTG 599
consensus_6940#1      ------------------------------------------------------------
                                                                                  

consensus_6940#0      GCCGTTATGATGGTGATCGTTGTGGAGAAGATGGGTGCCGTACTGCAGCTGTCAATGAGC 659
consensus_6940#1      ------------------------------------------------------------
                                                                                  

consensus_6940#0      TTGGGCCCGGTCACACTCGGACCACTGTTTGGGCTGTTCCTGATGGGTTTCTTCTTCCCG 719
consensus_6940#1      ------------------------------------------------------------
                                                                                  

consensus_6940#0      CGCATTAATGGCAGTTGTGCCATTTTGGGAACAACGGCAGGATTACTGCTGATGTCGTAC 779
consensus_6940#1      ------------------------------------------------------------
                                                                                  

consensus_6940#0      ATTGTGATACGGTCACAGATATCGATCGCGCTGAAGGAAATTGTGTTCGCCGAGAAGCCG 839
consensus_6940#1      ------------------------------------------------------------
                                                                                  

consensus_6940#0      GTCACCGTGGAAGGCTGTCTGTACGAGTTTACGCCGAAAAATGGTACACTCTTTGAAGCA 899
consensus_6940#1      ------------------------------------------------------------
                                                                                  

consensus_6940#0      GACTCAACTCCTGGGGAGAAGTCACTGCATCATGTGTCCTTCCTCTACTACACCATGATC 959
consensus_6940#1      ------------------------------------------------------------
                                                                                  

consensus_6940#0      GGCTCGGTAGTGCCGACGATTGTGGGCTATCTGGCCTCGTTCGTTTTACCGCGCTCGAAA 1019
consensus_6940#1      ------------------------------------------------------------
                                                                                  

consensus_6940#0      ACCGACGACATTGATCCGCTGCTGTTGGCACCGTTTCTGCGCCGTTTCTACCGCGCCCGG 1079
consensus_6940#1      ------------------------------------------------------------
                                                                                  

consensus_6940#0      GACACTAAGGCTAATCACATGACAGAGGTGTTGCACGAGTTCGAAACCAAAGAAATACAG 1139
consensus_6940#1      ------------------------------------------------------------
                                                                                  

consensus_6940#0      CTGTAAGACGGCTGGGCGGCTGCATCTATGACGGCAGCACGCGGTACAAAGCCGAGCGCC 1199
consensus_6940#1      ------------------------------------------------------------
                                                                                  

consensus_6940#0      ACTATCTTTGTACAGTAATTGTTATGATAAAAAAATTNAAGGGAAGAAGGAGCATGGGGA 1259
consensus_6940#1      ------------------------------------------------------------
                                                                                  

consensus_6940#0      TGTAGTCTGGTAGGTACAAGGTATGGGGAAAGTATNAGGGCAATGACCCTGGCANACTNN 1319
consensus_6940#1      ------------------------------------------------------------
                                                                                  

consensus_6940#0      ATNGACGACTACACGGGACATTTCCCATCAAAGGAACAGNACGGACNGGCNNAACAAAAC 1379
consensus_6940#1      ------------------------------------------------------------
                                                                                  

consensus_6940#0      ANGGGCATGTCGACGGACCGCAAAGNTTATTCCCCTTTAGCTNGAAGGT 1428
consensus_6940#1      -------------------------------------------------