These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6941#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 909 fasta sequence [CCGAACGGCTCAAAGAAGTGCTCCTCGTATGCGGCGAGCGGCGAGGAAGCGACGAATCGCAAACCGCCACCCCTGATACCGCTCGACAAGATCGATTCACTGGGCGACGGTGGCAACGCTAGCTTCCTGCAAGAGCATTTGTTTCCAATTTCCATTGCTGCGGGGGCTTTGGTTATAGCTGTAGCAGTAATTTTAGTGATATGCATTGGTCGGCGTCGGGCAAGCTCGGAAACGCAACACCAACACCACCACCAAACCATGACAGCGCAAACGGCTGGCTCGCGACAGGGCACGTTCCGTTCGGCGTCGCTCAATCGCTGCCCGTTCACGCCGGCCGACCGGCGCATCATCTCAAACGCACTGAGCTGGATCAGGGAAGCGTACGGGCCGGACGTTTGGAGCAAAATTAACACACCGATGCAGGAGCTGCTTGCACAGAACGGTGGCAGCGGTGTCGTCGAGGAGAAGGATAAGGTGCGGCTGATCGGCACCATCCTCGACAGCCTGAAGCGCCACGAAATCGGTGGCACACAGATCGTCGCCCTCAATGACGTTCTGTTCCGGCAACTCGGACCACCGGCCGTAGCAGCAGCAGCGCCGGAGCTGGCCGAACGCGAACGACCAAACAGTGATAACAATGACGAGCTGCTCGGACACATCTACGACGAGCTGCAACCGAACAGGGGAGCGCCGCGGCTACTCGGCGACTACGCGGCACCGCTCGATCACGGTGCGGTGACCGTCGTGCCCGAGGGCATCTATTCCGAGCCCGTCCTGCACGGGCAGCGCTTGCCGCAAGCACACCGAGGTGACAATCGAAACCTGATCAGCCCGTACGCGATTGGCGATGCTACGGTGCAGCGCAATCCGGCCGGCGCTGAGGGCAACCTGCCGGACGTGATACGTCCC] [+] EMBL BM623699 [CCGAACGGCTCAAAGAAGTGCTCCTCGTATGCGGCGAGCGGCGAGGAAGCGACGAATCGCAAACCGCCACCCCTGATACCGCTCGACAAGATCGATTCACTGGGCGACGGTGGCAACGCTAGCTTCCTGCAAGAGCATTTGTTTCCAATTTCCATTGCTGCGGGGGCTTTGGTTATAGCTGTAGCAGTAATTTTAGTGATATGCATTGGTCGGCGTCGGGCAAGCTCGGAAACGCAACACCAACACCACCACCAAACCATGACAGCGCAAACGGCTGGCTCGCGACAGGGCACGTTCCGTTCGGCGTCGCTCAATCGCTGCCCGTTCACGCCGGCCGACCGGCGCATCATCTCAAACGCACTGAGCTGGATCAGGGAAGCGTACGGGCCGGACGTTTGGAGCAAAATTAACACACCGATGCAGGAGCTGCTTGCCCAGAACGGTGGCAGTGGCGTCGTCGAGGAGAAGGATAAGGTGCGGCTGATCGGCACCATCCTCGACAGCCTGAAGCGCCACGAAATCGGTGGCACACAGATCGTCGCCCTCAATGACGTTCTGTTCCGGCAACTCGGACCACCGGCCGTAGCAGCAGCAGCGCCGGAGCTGGCCGAACGCGAACGACCAAACAGTGATAACAATGACGAGCTGCTCGGACACATCTACGACGAGCTGCAA CGAA ] [+] EMBL BX615159 [ GCTTCCTGCAGGAACATGTGTTTCCAATTTCCATTGCTGCGGGGGCTTTGGTTATAGCTGTAGCAGTAATTTTAGTGATATGCATTGGTCGGCGCCGGGCAAGCTCGGAAACGCAACACCAACACCACCACCAAACCATGACAGCGCAAACGGCCGGCTCGCGACAGGGCACGTTCCGTTCGGCGTCGCTCAATCGCTGCCCGTTCACGCCGGCCGACCGGCGCATTATCTCAAACGCACTGAGCTGGATCAGGGAAGCGTACGGGCCGGACGTTTGGAGCAAAATTAACACACCGATGCAGGAGCTGCTTGCACAGAACGGTGGCAGCGGTGTCGTCGAGGAGAAGGATAAGGTGCGGCTGATCGGCACCATCCTCGACAGCCTGAAGCGCCACGAAATCGGTGGCACACAGATCGTCGCCCTCAATGACGTTCTGTTCCGGCAACTCGGACCACCGGCCGTAGCAGCAGCAGCGCCGGAGCTGGCCGAACGCGAACGACCAAACAGTGATAACAATGACGAGCTGCTCGGACACATCTACGACGAGCTGCAACCGAACAGGGGAGCGCCGCGGCTACTCGGCGACTACGCGGCACCGCTCGATCACGGTGCGGTGACCGTCGTGCCCGAGGGCATCTATTCCGAGCCCGTCCTGCACGGGCAGCGCTTGCCGCAAGCACACCGAGGTGACAATCGAAACCTGATCAGCCCGTACGCGATTGGCGATGCTACGGTGCAGCGCAATCCGGCCGGCGCTGAGGGCAACCTGCCGGACGTGATACGTCCC] [+] EMBL BX603616 [ TACGGGCCGGACGTTTGGAGCAAAATTAACACACCGATGCAGGAGCTGCTTGCACAGAACGGTGGCAGCGGTGTCGTCGAGGAGAAGGATAAGGTGCGGCTGATCGGCACCATCCTCGACAGCCTGAAGCGCCACGAAATCGGTGGCACACAGATCGTCGCCCTCAATGACGTTCTGTTCCGGCAACTCGGACCACCGGCCGTAGCAGCAGCAGCGCCGGAGCTGGCCGAACGCGAACGACCAAACAGTGATAACAATGACGAGCTGCTCGGACACATCTACGACGAGCTGCAACCGAACAGGGGAGCGCCGCGGCTACTCGGCGACTACGCGGCACCGCTCGATCACGGTGCGGTGACCGTCGTGCCCGAGGGCATCTATTCCGAGCCCGTCCTGCACGGG ] [+] EMBL BX621794 [ CGGCACCATCCTCNACAGCCTGAAGCGCCACGAAATCGGTGGCACACAGATCGTCGCCCTCAATGACGTNCTGTTNCGGCAACTCGGACCACCGGNCGTAGCAGCAGCAGCGCCGGAGCTGGCCGAACGCGAACGACCAAACAGTGATAACAATGACGAGCTGCTCNGACACATCTACGACNAGCTGCAACCGAACAGGGGAGCGCCGCGGCTGCTCGGNGACTACGCGGNACCGCTCGATCACGGTG ] consensusID : consensus_6941#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 796 fasta sequence [CCCCGAGGTTTACACCGGCCGTAGCAGCAGCAGCGCCGGAGCTGGCCGAACGCGAACGACCAAACAGTGATAACAATGACGAGCTGCTCGGACACATCTACGACGAGCTGCAACCGAACAGGGGAGCGCCGCGGCTACTCGGCGACTACGCGGCACCTCTCGATCACGGTGCGGTGACCGTCGTGCCCGAGGGCATCTATTCCGAGCCCGTCCTGCACGGGCAGCGCTTGCCGCAAGCACACCGAGGTGACAATCGAAACCTGATCAGCCCGTACGCGATTGGCGATGCTACGGTGCAGCGCAATCCGGCCGGCGCTGAGGGCAACCTGCCGGACGTGATACGTCCCACTGGGCACGCGTGGAAAGCTAACGCCGAGGAGGACGACCTGGACGATGAGGATGAGGACGACATCGATGGGGAAGCGGAGCGTAAAACGATGCTTCGCCACCGATGATGGATGGCGGCAGCGCTGGGGCGCCCACGTACGCAATATCGCTGAAGCAGCTGAAGCGGCCC--TAGGGGCAACACACCAACTCCCACTCCGCCACCCCCAGTGCCGTCGGGTAGTGGCGGGGAGGACCAACCGGACGGTAACGATGGTAACCGGTCGGAACATTCCGGCAGTAGCATGCAAACGGTTCGCATCGAAGATATGACCCTGGCGGATGACGACGCCCGTGAGCAACGGTAACATATGCTGCACAGAGAGAGAGAGAGTGCGAGCGAGCGAGAGAAAGTGTGTATCTGTGTACTAGAGCAATAAAAACGTCTCATACTTTTTAAAGTCAAAAAAAA] [+] EMBL AL692190 [CCCCGAGGTTTACACCGGCCGTAGCAGCAGCAGCGCCGGAGCTGGCCGAACGCGAACGACCAAACAGTGATAACAATGACGAGCTGCTCGGACACATCTACGACGAGCTGCAACCGAACAGGGGAGCGCCGCGGCTACTCGGCGACTACGCGGCACCTCTCGATCACGGTGCGGTGACCGTCGTGCCCGAGGGCATCTATTCCGAGCCCGTCCTGCACGGGCAGCGCTTGCCGCAAGCACACCGAGGTGACAATCGAAACCTGATCAGCCCGTACGCGATTGGCGATGCTACGGTGCAGCGCAATCCGGCCGGCGCTGAGGGCAACCTGCCGGACGTGATACGTCCCACTGGGCACGCGTGGAAAGCTAACGCCGAGGAGGACGACCTGGACGATGAGGATGAGGACGACATCGATGGGGAAGCGGAGCGTAAAACGATGCTTCGCCACCGATGATGGATGGCGGCAGCGCTGGGGCGCCCACGTACGCAATATCGCTGAAGCAGCTGAAGCGGCCC TAGGGGCAACACACCAACTCCCA ] [-] EMBL AGA283327 [ CGCCCACGAACGCAATATCGCTGAAGCAGCTGAAGCGGCCCCATAGGGGCAACACACCACCTCCCACTCCGCCACCCCCAGTGCCGTCGGGTAGTGGCGGGGAGGACCAACCGGACGGTAACGATGGTAACCGGTCGGAACATTCCGGCAGTAGCATGCAAACGGTTCGCATCGAAGATATGACCCTGGCGGATGACGACGCCCGTGAGCAACGGTAACATATGCTGCACAGAGAGAGAGAGAGTGCGAGCGAGCGAGAGAAAGTGTGTATCTGTGTACTAGAGCAATAAAAACGTCTCATACTTTTTAAAGTCAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6941#0 CCGAACGGCTCAAAGAAGTGCTCCTCGTATGCGGCGAGCGGCGAGGAAGC-GACGAATCG 59 consensus_6941#1 --------CCCCGAGGTTTACACCGGCCGTAGCAGCAGCAGCGCCGGAGCTGGCCGAACG 52 * * ** * * ** * *** *** * *** * * * ** consensus_6941#0 CAAACCGCCACCCC-TGATACCGCTCGACAAGATCGATTCACTGGGCGACGGTGGCAACG 118 consensus_6941#1 CGAACGACCAAACAGTGATAACAAT-GACGAGCTGCTCGGACACATCTACGACG--AGCT 109 * *** *** * ***** * * *** ** * ** * *** * * * consensus_6941#0 CTAGCTTCCTGCAAGAGCATTTGTTTCCAATTTCCATTGCTGCGGGGGCTTTGGTTATAG 178 consensus_6941#1 GCAACCGAACAGGGGAGCGCC-GCGGCTACTCGGCGACTACGCGGCACCTCTCGATCACG 168 * * **** * * * * * **** ** * * * * consensus_6941#0 CTGTAGCAGTAATTTTAGTGATATGCAT-TGGTCGGCGTCGGGCAAGCTCGGA-AACGC- 235 consensus_6941#1 GTGCGGTGACCGTCGTGCCCGAGGGCATCTATTCCGAGCCCGTCCTGCACGGGCAGCGCT 228 ** * * * **** * ** * * * * * ** *** * *** consensus_6941#0 -AACACCAACACCACCACCAAACCATGACAGCGCAAACGGCTGGCTCGCGACAGGGCACG 294 consensus_6941#1 TGCCGCAAGCACACCGAGGTGACAATCGAAACCTGATCAGCCCGTACGCGATTGGCGATG 288 * * * *** * * ** ** * * * * ** * ***** ** * * consensus_6941#0 TTCCGTT-CGGCGTCGCTCAATCGCTGCCCGTTCACGCCGGCCGACCG----GCGCATCA 349 consensus_6941#1 CTACGGTGCAGCGCAATCCGGCCGGCGCTGAGGGCAACCTGCCGGACGTGATACGTCCCA 348 * ** * * *** * ** ** ** **** ** ** ** consensus_6941#0 TCTCAAACGCACTGAGCTGGATCAGGGAAGCGTACGGGCCGGACGTTTGGAGCAAAATTA 409 consensus_6941#1 CTGGGCACGCGTGGAAAGCTAACGCCGAGGAGGACGACCTGGACGATGAGGATGAGGACG 408 **** ** * * ** * * *** * ***** * * * consensus_6941#0 ACACACCGATGCAGGAGCTGCTTGCACAGAACGGTGGCAGCGGTGTCGTCGAGGAGAAGG 469 consensus_6941#1 ACA--TCGATGGGGAAGCGGA--GCGTAAAACGATG----CTTCGCCACCGATGATGGAT 460 *** ***** * *** * ** * **** ** * * * *** ** consensus_6941#0 ATAAGGTGCGGCTGATCGGCACCATCCTCGACAGC-CTGAAGCGCCACGAAATCGGTGGC 528 consensus_6941#1 GGCGGCAGCGCTGGGGCGCCCACGTACGCAATATCGCTGAAGCAGC-TGAA----GCGGC 515 * *** * ** * * * * * * * * ******* * *** * *** consensus_6941#0 ACACAGATCGTCGCCCTCAATGACGTTCTGTTCCGGCAACTCGGACCACCGGCCGTAGCA 588 consensus_6941#1 CCTAGGGGCAACACAC-CAAC----TCCCACTCCGCCA-CCCCCAGTGCCGTCGG--GTA 567 * * * * * * *** * * **** ** * * * *** * * * * consensus_6941#0 GCAGCAGCGCCGGAGCTGGCCGAACGCGAACGAC--CAAACAGTGATAACAATGACG-AG 645 consensus_6941#1 GTGGCGGGG--AGGACCAACCGGACGGTAACGATGGTAACCGGTCGGAACATTCCGGCAG 625 * ** * * * * *** *** ***** ** * ** **** * * ** consensus_6941#0 CTGCTCGGACACA-TCTACGACGA-GCTGCAACCGAACAGGGGAGCGCCGCGGCTACTCG 703 consensus_6941#1 TAGCATGCAAACGGTTCGCATCGAAGATATGACCCTGGCGGATGACGACGCCCGTGAGCA 685 ** * * ** * * *** * * *** ** ** *** * * consensus_6941#0 GCGACTACGCGGCACCGCTCGATCACGGTGCGGTGACCGTCGTGCCCGAGGGCATCTATT 763 consensus_6941#1 ACGGTAACATA-TGCTGCACAGAGAGAGAGAGAGTGCGAGCGAGCGAGAGAAAGTGTGTA 744 ** ** * ** * * * * * * ** ** *** * * * consensus_6941#0 CCGAGCCCGTCCTGCACGGGCAGCGCTTGCCGCAAGCACACCGAGGTGACAATCGAAACC 823 consensus_6941#1 TCTGTGTACTAGAGCAATAAAAACGTCT----CATACTTTTTAAAGTCAAAAAAAA---- 796 * * *** * ** * ** * * ** * ** * consensus_6941#0 TGATCAGCCCGTACGCGATTGGCGATGCTACGGTGCAGCGCAATCCGGCCGGCGCTGAGG 883 consensus_6941#1 ------------------------------------------------------------ consensus_6941#0 GCAACCTGCCGGACGTGATACGTCCC 909 consensus_6941#1 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||