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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6947#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 735 fasta sequence
[ATTGCCGAGGCGGATTCCAACGTCCTTTTTTCCCCCGTACACACATACAAACTATGCCATTGCGAATGCTTGCGCTAATAAAGGCCAACGTAGTAGAGAAAATAGAAGAAACCTTCGCGGAACAGGCAGAACGGAACGTAGCAAAAGACGCAAGAAAGAGTGTAACATAATTAGATGAGCAACAACAACTCAAAGCAAACAACAACCACAACTATGAAACAGAGTATGTGTGTGTGTGTGTTTGTATGAATTATCTTATCTACATCTACAAGCAACCAAGCTGTGAAGCAGCGAACGACAAAGGGTAGAAACCGAGTGCAAAATTCATATTTTCTCACGTGTTGTATGTGTATGTTACCGTCGCCTCCCAAGCAGGGGTGAGTTACCCGCGCAAGCAGCAGATAAGCAAGTCAGATATCGTATTGTAGGGTAGTAATCGACTTCCTTGAGTGTTGAAGGCTCTAGTGAATGACAGGATTGTTGATGTTTTCCCCCCCATTTCTTGCGCGCTTTGCAAGCTGTGTTTCACAAAGAAACCA-AAAACATGTGTGCAA-GTAAAGAGATACATGAATGGGAAGCTATAATTACAAGCACAGTGGAAAGAACAAAATCGTATATTGAAGAAATAGGATTGGAATGTCGTGAAAGCGCGTTACAAATGATCGGTGAAGTAAAACAGATACCGAACGAAGCGTGTAAGCATAACACAAAAGCGAATCGAATAAGACACGCATA]
[+] EMBL AL934562 [ATTGCCGAGGCGGATTCCAACGTCCTTTTTTCCCCCGTACACACATACAAACTATGCCATTGCGAATGCTTGCGCTAATAAAGGCCAACGTAGTAGAGAAAATAGAAGAAACCTTCGCGGAACAGGCAGAACGGAACGTAGCAAAAGACGCAAGAAAGAGTGTAACATAATTAGATGAGCAACAACAACTCAAAGCAAACAACAACCACAACTATGAAACAGAGTATGTGTGTGTGTGTGTTTGTATGAATTATCTTATCTACATCTACAAGCAACCAAGCTGTGAAGCAGCGAACGACAAAGGGTAGAAACCGAGTGCAAAATTCATATTTTCTCACGTGTTGTATGTGTATGTTACCGTCGCCTCCCAAGCAGGGGTGAGTTACCCGCGCAAGCAGCAGATAAGCAAGTCAGATATCGTATTGTAGGGTAGTAATCGACTTCCTTGAGTGTTGAAGGCTCTAGTGAATGACAGGATTGTTGATGTTTTCCCCCCCATTTCTTGCGCGCTTTGCAAGCTGTGTTTCACAAAGAAACCACAAAACATGTGTGCAAGGTAAAGAGATACATGAATGGGAAGCTATAATTACAAGCACAGT ]
[+] EMBL BM609709 [ ccgGCTTGCGCTAATAAAGGCCAACGTAGTAGAGAAAATAGAAGAAACCTTCGCGGAACAGGCAGAACGGAACGTAGCAAAAGACGCGAGAAAGAGTGTAACATAATTAGATGAGCAACAACAACTCAAAGCAAACAACAACCACAACTATGAAACAGAGTATGTGTGTGTGTGTGTTTGTATGAATTATCTTATCTACATCTACAAGCAACCAAGCTGTGAAGCAGCGAACGACAAAGGGTAGAAACCGAGTGCAAAATTCATATTTTCTCACGTGTTGTATGTGTATGTTACCGTCGCCTCCCAAGCAGGGGTGAGTTACCCGCGCAAGCAGCAGATAAGCAAGTCAGATATCGTATTGTAGGGTAGTAATCGACTTCCTTGAGTGTTGAAGGCTCTAGTGAATGACAGGATTGTTGATGTTTTCCCCCCCATTTCTTGCGCGCTTTGCAAGCTGTGTTTCACAAAGAAACCA AAAACATGTGTGCAA GTAAAGAGATACATGAATGGGAAGCTATAATTACAAGCACAGTGGAAAGAACAAAATCGTA ]
[+] EMBL BM645093 [ ccgGCAGGGGTGAGTTACCCGCGCAAGCAGCAGATAAGCAAGTCAGATATCGTATTGTAGGGTAGTAATCGACTTCCTTGAGTGTTGAAGGCTCTAGTGAATGACAGGATTGTTGATGTTTTCCCCCCCATTTCTTGCGCGCTTTGCAAGCTGTGTTTCACAAAGAAACCA AAAACATGTGTGCAA GTAAAGAGATACATGAATGGGAAGCTATAATTACAAGCACAGT GAAAGAACAAAATCGTATATTGAAGAAATAGGATTGGAATGTCGTGAAAGCGCGTTACAAATGATCGGTGAAGTAAAACAGATACCGAACGAAGCGTGTAAGCATAACACAAAAGCGAATCGAATAAGACACGCATA]
consensusID : consensus_6947#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 718 fasta sequence
[CCGTACGATTTAGCCGTTCGCTTAACAGCTTTCTTCGACTGTTTTCATCAAAACATGCACCATTTTTTATGTGCTGAATGAAGATGAATTATGCTTTTTTTTTGTTGCTATCAAACTTCGCTAATTTGATAAACCGTGGCTGCGCTGAGCCTTGTGAGTGATAGCGCAAAGCTTGTTGGTTTACCATTTCTGTTGGTTTTTTTTCTCTCCCAATTGAATGCGCTCTATTTTGTGCTCTAAAATCTAATTGTGATACAGAATAGTTTCCGCTCCTCTCTTTGTATAGTGCGAGTGCACGTGCGAGTGTGTACATTTT-AAAATGCATTGAGCTAACAAAACGGATCTCCAACGTCCTTTTTTTCCCCCGTACACACATACCAACTATGCCATTGCGAATGCTTGCGCTAATAAAGGCCAACGTAGTAGAGAAAATAGAAGAAACCTTCGCGGAACAGGTAGAACGGAGCGTAGCAAAAAGACGCAAGAAAGAGTGTAACATAATTAGATGAGCAACAGCAACTCAAAGCAAACAACTCAATACCACAACTATGAGACAGAGTA----TGTGTGTGTGTGTGTTTGTATGAATTATCTTATCTACATCTACAAGAGCAACCAAGCTGTGAAGCAGCGAACGACAAAGGGTAGAAACCGAGTGCAAAATTCATATTTTCTCACGTGTTGGATGTGTACCGTCGCCTCCCAAGCAGGG-GTGAGTTAC]
[+] EMBL BM656590 [CCGTACGATTTAGCCGTTCGCTTAACAGCTTTCTTCGACTGTTTTCATCAAAACATGCACCATTTTTTATGTGCTGAATGAAGATGAATTATGCTTTTTTTTTGTTGCTATCAAACTTCGCTAATTTGATAAACCGTGGCTGCGCTGAGCCTTGTGAGTGATAGCGCAAAGCTTGTTGGTTTACCATTTCTGTTGGTTTTTTTTCTCTCCCAATTGAATGCGCTCTATTTTGTGCTCTAAAATCTAATTGTGATACAGAATAGTTTCCGCTCCTCTCTTTGTATAGTGCGAGTGCACGTGCGAGTGTGTACATTTT AAAATGCATTGAGCTAACAAAACGGATCTCCAACGTCCTTTTTTTCCCCCGTACACACATACCAACTATGCCATTGCGAATGCTTGCGCTAATAAAGGCCAACGTAGTAGAGAAAATAGAAGAAACCTTCGCGGAACAGGTAGAACGGAGCGTAGCAAAAAGACGCAAGAAAGAGTGTAACATAATTAGATGAGCAACAGCAACTCAAAGCAAACAACTCAATACCACAACTATGAGACAGAGTA TGTGTGTGTGTGTGTTTGTATGAATTATCTTATCTACATCTACAAGAGCAACCAAGCTGTGAAGCAGCGAACGACAAAGGGTAGAAACCGAGTGCAAAATTCATATTTTCTCACGTGTTGGATGTGTA ]
[+] EMBL BM598513 [ ccgAATCTTCGCTAATTTGATAAACCGTGGCT GCTGAGCCTTGTGAGTGATAGCGCAAAGCTTGTTGGTTTACCATTTCTGTTGGTTTTTT TCCCAATTGAATGCGCTCTATTTCGTGCTCTAAAATCTAATTGTGATACAGAATAGTTTCCGCTCCTCTCTTTGTATAGTGCGAGCGCACGTGCGAGTGTGTACATTTTAAAAATGCATTGAGCTAACAAAACGGATCTCCAACGTCC TTTTTTCCCCCGTACACACATACAAACTATGCCATTGCGAATGCTTGCGCTACTAAAGGCCAACGTAGTAGAGAAAATAGAAGAAACCTTCGCGGAACAGGCAGAACGGAACGTAGCAAAAAGACGCAAGAAAGAGTGTAACATAATTAGATGAGCAACAACAACTCAAAGCAAACAACTCAATACCACAACTATGAGACAGAGTATGTGTGTGTGTGTGTGTGTTTGTATGAATTATCTTATCTACATCTACAA A CAACCAAGCTGTGAAGCAGCGAACGACAAAGGGTAGAAACCGAGTGCAAAATTCATATTTTCTCACGTGTTGTATGTGTACCGTCGCCTCCCAAGCAGGGTGTGAGTTAC]
consensusID : consensus_6947#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence
[GCAGAATCGCGCCCGAGGTTGAATGGGAAGCTATAATTACAAGCACAGTGAAAGAACAAAATCGTATATTGAAGAAATAGGATTGGAATGTCGTGAAAGCGCGTTACAAATGATCGGTGAAGTAAAACAGATACCGAACGAAGCGTGTAAGCATAACACAAAAGCGAATCGAATAAGACACGCATAGCAGCTACATACAAACTACTACAACAACAAAAAGAAACAGAACAAAAACACTAAATTTGAACCACAACCGCTCCAGAACAGATGATAAATGTGTGTATGTGAGTGTGCGTGTGTGTGTGTGTGTGTGGGGTCTGTGTTGAAAAAGTAGCAAATTGCTGTTGCTTGTTGTGTGTGTACCAACACACAAAGTTTAAGTTTTATAAAAAGAAAATAATATGCCAGTTATNCTTGTCAAAGTAGCATAGCATATAAAAGCAAGCATCAAACCGG]
[+] EMBL AL697238 [GCAGAATCGCGCCCGAGGTTGAATGGGAAGCTATAATTACAAGCACAGTGAAAGAACAAAATCGTATATTGAAGAAATAGGATTGGAATGTCGTGAAAGCGCGTTACAAATGATCGGTGAAGTAAAACAGATACCGAACGAAGCGTGTAAGCATAACACAAAAGCGAATCGAATAAGACACGCATAGCAGCTACATACAAACTACTACAACAACAAAAAGAAACAGAACAAAAACACTAAATTTGAACCACAACCGCTCCAGAACAGATGATAAATGTGTGTATGTGAGTGTGCGTGTGTGTGTGTGTGTGTGGGGTCTGTGTTGAAAAAGTAGCAAATTGCTGTTGCTTGTTGTGTGTGTACCAACACACAAAGTTTAAGTTTTATAAAAAGAAAATAATATGCCAGTTATNCTTGTCAAAGTAGCATAGCATATAAAAGCAAGCATCAAACCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6947#0 ------------------------------------------------------------
consensus_6947#1 CCGTACGATTTAGCCGTTCGCTTAACAGCTTTCTTCGACTGTTTTCATCAAAACATGCAC 60
consensus_6947#2 ------------------------------------------------------------
consensus_6947#0 ------------------------------------------------------------
consensus_6947#1 CATTTTTTATGTGCTGAATGAAGATGAATTATGCTTTTTTTTTGTTGCTATCAAACTTCG 120
consensus_6947#2 ------------------------------------------------------------
consensus_6947#0 ------------------------------------------------------------
consensus_6947#1 CTAATTTGATAAACCGTGGCTGCGCTGAGCCTTGTGAGTGATAGCGCAAAGCTTGTTGGT 180
consensus_6947#2 ------------------------------------------------------------
consensus_6947#0 ------------------------------------------------------------
consensus_6947#1 TTACCATTTCTGTTGGTTTTTTTTCTCTCCCAATTGAATGCGCTCTATTTTGTGCTCTAA 240
consensus_6947#2 ------------------------------------------------------------
consensus_6947#0 ------------------------------------------------------------
consensus_6947#1 AATCTAATTGTGATACAGAATAGTTTCCGCTCCTCTCTTTGTATAGTGCGAGTGCACGTG 300
consensus_6947#2 --------------GCAGAAT------CGCGCCCGAGGTTGAATGG-GAAGCTATAATTA 39
consensus_6947#0 ----------------------------ATTGCCGAGGCGGAT-TCCAACGTCCTTTTTT 31
consensus_6947#1 CGAGTGTGTACATTTTAAAATGCATTGAGCTAACAAAACGGATCTCCAACGTCCTTTTTT 360
consensus_6947#2 CAAGCACAGTGAAAGAACAAAATCGTATATTGAAGAAATAGGATTGGAATGTCGTGAAAG 99
* * * * ** *** *
consensus_6947#0 -CCCCCGTACACACATACAAACTATGCCATTGCGAATGCTTGCGCTAATAAAGGCCAACG 90
consensus_6947#1 TCCCCCGTACACACATACCAACTATGCCATTGCGAATGCTTGCGCTAATAAAGGCCAACG 420
consensus_6947#2 ---CGCGT-TACAAATGATCGGTGAAGTAAAACAGATACC-GAACGAA-GCGTGTAAGCA 153
* *** *** ** * * * ** * * * ** * * *
consensus_6947#0 TAGTAGAGAA---AATAGAAGAAACCTTCGCGGAACAGGCAGA-ACGGAACGTAGCAAAA 146
consensus_6947#1 TAGTAGAGAA---AATAGAAGAAACCTTCGCGGAACAGGTAGA-ACGGAGCGTAGCAAAA 476
consensus_6947#2 TAACACAAAAGCGAATCGAATAAGACA-CGCATAGCAGCTACATACAAACTACTACAACA 212
** * * ** *** *** ** * *** * *** * * ** * *** *
consensus_6947#0 -GACGCAAGAAAGAGTGTAACATAATTAGAT--GAGCAACAACAACTC-AAAGCAAACAA 202
consensus_6947#1 AGACGCAAGAAAGAGTGTAACATAATTAGAT--GAGCAACAGCAACTC-AAAGCAAACAA 533
consensus_6947#2 ACA-AAAAGAAACAGAACAAAAACACTAAATTTGAACCACAACCGCTCCAGAACAGATGA 271
* ****** ** ** * * ** ** ** * *** * *** * * ** * *
consensus_6947#0 CA----ACCACAACTATGAAACAGAGTATGTGTGTGTGTGTGTTTGTATGAATTATCTTA 258
consensus_6947#1 CTCAATACCACAACTATGAGACAGAGTATGTGTGTGTGTGTGTTTGTATGAATTATCTTA 593
consensus_6947#2 TA----AATGTGTGTATGTG--AGTGTGCGTGTGTGTGTGTGTGTGTGGGGTCTGTGTTG 325
* **** ** ** ************** *** * * * **
consensus_6947#0 TCTACATCTACAAG--CAACCAA--GCTGTGAAGCAGCGAACGACAAAGGGTAGAAACCG 314
consensus_6947#1 TCTACATCTACAAGAGCAACCAA--GCTGTGAAGCAGCGAACGACAAAGGGTAGAAACCG 651
consensus_6947#2 AAAAAGTAGCAAATTGCTGTTGCTTGTTGTGTGTGTACCAAC-ACACAAAGTTTAAGTTT 384
* * ** * * **** * *** *** * ** **
consensus_6947#0 AGTGCAAAATTCATATTTTCTCACGTGTTGTATGTGTATGTTACCGTCGCCTCCCAAGCA 374
consensus_6947#1 AGTGCAAAATTCATATTTTCTCACGTGTTGGATGTG-----TACCGTCGCCTCCCAAGCA 706
consensus_6947#2 TATAAAAAGAAAATAATATGCCA---GTTATNCTTGT----CAAAGTAGCATAGCATATA 437
* *** *** * * ** *** ** * ** ** * ** *
consensus_6947#0 GGGGTGAGTTACCCGCGCAAGCAGCAGATAAGCAAGTCAGATATCGTATTGTAGGGTAGT 434
consensus_6947#1 GGGGTGAGTTAC------------------------------------------------ 718
consensus_6947#2 AAAGCAAGCATCAAACCGG----------------------------------------- 456
* ** *
consensus_6947#0 AATCGACTTCCTTGAGTGTTGAAGGCTCTAGTGAATGACAGGATTGTTGATGTTTTCCCC 494
consensus_6947#1 ------------------------------------------------------------
consensus_6947#2 ------------------------------------------------------------
consensus_6947#0 CCCATTTCTTGCGCGCTTTGCAAGCTGTGTTTCACAAAGAAACCAAAAACATGTGTGCAA 554
consensus_6947#1 ------------------------------------------------------------
consensus_6947#2 ------------------------------------------------------------
consensus_6947#0 GTAAAGAGATACATGAATGGGAAGCTATAATTACAAGCACAGTGGAAAGAACAAAATCGT 614
consensus_6947#1 ------------------------------------------------------------
consensus_6947#2 ------------------------------------------------------------
consensus_6947#0 ATATTGAAGAAATAGGATTGGAATGTCGTGAAAGCGCGTTACAAATGATCGGTGAAGTAA 674
consensus_6947#1 ------------------------------------------------------------
consensus_6947#2 ------------------------------------------------------------
consensus_6947#0 AACAGATACCGAACGAAGCGTGTAAGCATAACACAAAAGCGAATCGAATAAGACACGCAT 734
consensus_6947#1 ------------------------------------------------------------
consensus_6947#2 ------------------------------------------------------------
consensus_6947#0 A 735
consensus_6947#1 -
consensus_6947#2 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||