These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6949#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 984 fasta sequence [CCGCCCACGCGTCCGAAAAAAACTACACCGCTCAGACAGCAATTACGGATTCTTGGCCAGCCGTCCAACAGACTCGCAGGAGTGAAATAAATAGCTGAAATGTGTTCCAAACGATGTTGATCGTGGAAGTATATCACCACAGCCGTGCGCACTACGGATCGAACCGTTTAATCGCCACATAGGCACTGATTTTTCCCATAGACTACTGTTGAAGGTACCATACGCAATCGCCCTTGCGCTGCTGGATCGCGGTGATATCGACCAATTCATTCCCGCCCTATTGTCTACGTCAGTACCTTAAAAGTTTTCCCTACCGGGCTTATCAGTTGTGTGGTTCGTAAAAAGGAAAAAAAAGAAGCTTACTACAATGCTACCATTAACGCATAAAGATTCACGTGGATGCGGCTACCGGATACGGGAAAAGTTCAACAGTTGGAGCCGGCTCATTCTGTCGGATCGCAATTCGCGTAATTTATTTCTATTTCTGCTGCTTAATTTAAGCTTTGCCTTCGTCGAACTAATGTATGGCATATGGACGAACAGTTTAGGTTTGATCTCCGATTCGTTCCACATGTTCTTCGACT-GTACCGGGCTGTTGGCTGGTTTGGCTGCGTCCGTTATTACCAAATGGCGTGCAAACGAAAAGTATT-CCTACGGGTACGTT-CGTGCTGAAGTGC-TCGCC-GGGTTTGTCAACAGTCTCTTTTTGCTGTTTATCGCCTTCTTCATTATGTCCGAGGCAGTAGAGCGCGCTATAGAGCCACCGGAAGTGAAACACGAACGATTGTTCGTCGTATCGGTGCTCGGACTGTTGGTAAACTTGGTCGGTATCTATGCATTCCAGCACGGTGGAGCACACGGACATTCGCATGGCGGCGGTGGTGGCCACGGGCATTCGCACGGCGGCGG-AGGTGGTGGAAGTCATGGACATTCCCATGGGGGGTGGTATGAATCATCACAGTCACGATACTCACAGCCTGCTGTCCA] [+] EMBL BM580931 [CCGCCCACGCGTCCGAAAAAAACTACACCGCTCAGACAGCAATTACGGATTCTTGGCCAGCCGTCCAACAGACTCGCAGGAGTGAAATAAATAGCTGAAATGTGTTCCAAACGATGTTGATCGTGGAAGTATATCACCACAGCCGTGCGCACTACGGATCGAACCGTTTAATCGCCACATAGGCACTGATTTTTCCCATAGACTACTGTTGAAGGTACCATACGCAATCGCCCTTGCGCTGCTGGATCGCGGTGATATCGACCAATTCATTCCCGCCCTATTGTCTACGTCAGTACCTTAAAAGTTTTCCCTACCGGGCTTATCAGTTGTGTGGTTCGTAAAAAGGAAAAAAAAGAAGCTTACTACAATGCTACCATTAACGCATAAAGATTCACGTGGATGCGGCTACCGGATACGGGAAAAGTTCAACAGTTGGAGCCGGCTCATTCTGTCGGATCGCAATTCGCGTAATTTATTTCTATTTCTGCTGCTTAATTTAAGCTTTGCCTTCGTCGAACTAATGTATGGCATATGGACGAACAGTTTAGGTTTGATCTCCGATTCGTTCCACATGTTCTTCGACT GTACCGGGCTGTTGGCTGGTTTGGCTGCGTCCGTTATTACCAAATGGCGTGCAAACGAAAAGTATT CCTACGGGTACGTT CGTGCTGAAGTGC TCGCCGGGGTTTGT ] [+] EMBL BM581410 [ ccgAGCAATTACGGATTCTTGGCCAGCCGTCCAACAGACTCGCAGGAGTGAAATAAATAGCTGAAATGTGTTCCAAACGATGTTGATCGTGGAAGTATATCACCACAGCCGTGCGCACTACGGATCGAACCGTTTAATCGCCACATAGGCACTGATTTTTCCCATAGACTACTGTTGAAGGTACCATACGCAATCGCCCTTGCGCTGCTGGATCGCGGTGATATCGACCAATTCATTCCCGCCCTATTGTCTACGTCAGTACCTTAAAAGTTTTCCCTACCGGGCTTATCAGTTGTGTGGTTCGTAAAAAGGAAAAAAAAGAAGCTTACTACAATGCTACCATTAACGCATAAAGATTCACGTGGATGCGGCTACCGGATACGGGAAAAGTTCAACAGTTGGAGCCGGCTCATTCTGTCGGATCGCAATTCGCGTAATTTATTTCTATTTCTGCTGCTTAATTTAAGCTTTGCCTTCGTCGAACTAATGTATGGCATATGGACGAACAGTTTAGGTTTGATCTCCGATTCGTTCCACATGTTCTTCGACTGGTACCGGGCTGTTGGCTGGTTTGGCTGCGTCCGTTATTACCAAATGGCGTGCAAACGAAAAGTATTCCCTACGGGTACGTTCCGTGCTGAAGTGCTTCGCC GGGTTTGTCAACAGTCTCTTTTTGCTG ] [+] EMBL BM606576 [ ccgCGACCAATTCATTCCCGCCCTATTGTCTACGTCAGTACCTTAAAAGTTTTCCCTACCGGGCTTATCAGTTGTGTGGTTCGTAAAAAGAAAAAAAAAGAAGCTTACTACAATGCTACCATTAACGCATAAAGATTCACGTGGATGCGGCTACCGGATACGGGAAAAGTTCAACAGTTGGAGCCGGCTCATTCTGTCGGATCGCAATTCGCGTAATTTATTTCTATTTCTGCTGCTTAATTTAAGCTTTGCCTTCGTCGAACTAATGTATGGCATATGGACGAACAGTTTAGGTTTGATCTCCGATTCGTTCCACATGTTCTTCGACT GTACCGGGCTGTTGGCCGGTTTGGCTGCGTCCGTTATTACCAAATGGCGTGCAAACGAAAAGTATT CCTACGGGTACGTT CGTGCTGAAGTGC TCGCC GGGTTTGTCAACAGTCTCTTTTTGCTGTTTATCGCCTTCTTCATTATGTCCGAGGCAGTAGAGCGCGCTATAGAGCCACCGGAAGTGAAACACGAACGATTGTTCGTCGTATCGGTGCTCGGACTGTTGGTAAACTTGGTCGGTATCTATGCATTCCAGCACGGTGGAGCACACGGACATTCGCATGGCGGCGGTGGTGGCCACGGGCATTCGCACGGCGGCGG AGGTGGTGGAAGTCAT ] [+] EMBL BM600916 [ AGAAGCTTACTACAATGCTACCATTAACGCATAAAGATTCACGTGGATGCGGCTACCGGATACGGGAAAAGTTCAACAGTTGGAGCCGGCTCATTCTGTCGGATCGCAATTCGCGTAATTTATTTCTATTTCTGCTGCTTAATTTAAGCTTTGCCTTCGTCGAACTAATGTATGGCATATGGACGAACAGTTTAGGTTTGATCTCCGATTCGTTCCACATGTTCTTCGACT GTACCGGGCTGTTGGCCGGTTTGGCTGCGTCCGTTATTACCAAATGGCGTGCAAACGAAAAGTATT CCTACGGGTACGTT CGTGCTGAAGTGC TCGCC GGGTTTGTCAACAGTCTCTTTTTGCTGTTTATCGCCTTCTTCATTATGTCCGAGGCAGTAGAGCGCGCTATAGAGCCACCGGAAGTGAAACACGAACGATTGTTCGTCGTATCGGTGCTCGGACTGTTGGTAAACTTGGTCGGTATCTATGCATTCCAGCACGGTGGAGCACACGGACATTCGCATGGCGGCGGTGGTGGCCACGGGCATTCGCACGGCGGCGGAAGGTGGTGGAAATCATGGACATTCCCATGGGGGGTGGTATGAATCATCACAGTCACGATACTCACAGCCTGCTGTCCA] consensusID : consensus_6949#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 666 fasta sequence [CCGGTGTCGTGATATCGGTCTGTAATACCGCTATGATCGGGCTACCGTCCACTACGTACATGCACAACATTTTGAGGAAATAGAAAAAATAAAATGAGGAATCACTGATTTTTCCCATAGACTACTGTTGAAGGTACCATACGCAATCGCCCTTGCGCTGCTGGATCGCGGTGATATCGACCAATTCATTCCCGCCCTATTGTCTACGTCAGTACCTTAAAAGTTTTCCCTACCGGGCTTATCAGTTGTGTGGTTCGTAAAAAAAAAAAAAAAAGAAGCTTACTACAATGCTACCATTAACGCATAAAGATTCACGTGGATGCGGCTACCGGATACGGGAAAAGTTCAACAGTTGGAGCCGGCTCATTCTGTCGGATCGCAATTCGCGTAATTTATTTCTATTTCTGCTGCTTAATTTAAGCTTTGCCTTCGTCGAACTAATGTATGGCATATGGACGAACAGTTTAGGTTTGATCTCCGATTCGTTCCACATGTTCTTCGACTGATACCGGGCTGTTGGCCGGTTTGGGCTGCGTCCGTTATTACCAAATGGCGTGCAAACGAAAAGTATTCCCTACGGGTACGTTTCGTGCTGAAGTGCTCCGCCGGGTTTGTCAACAGTCCTCTTTTTGCTGGTTATCGCCTTCTTCATTATGTCCGAGGCAG] [+] EMBL BM594227 [CCGGTGTCGTGATATCGGTCTGTAATACCGCTATGATCGGGCTACCGTCCACTACGTACATGCACAACATTTTGAGGAAATAGAAAAAATAAAATGAGGAATCACTGATTTTTCCCATAGACTACTGTTGAAGGTACCATACGCAATCGCCCTTGCGCTGCTGGATCGCGGTGATATCGACCAATTCATTCCCGCCCTATTGTCTACGTCAGTACCTTAAAAGTTTTCCCTACCGGGCTTATCAGTTGTGTGGTTCGTAAAAAAAAAAAAAAAAGAAGCTTACTACAATGCTACCATTAACGCATAAAGATTCACGTGGATGCGGCTACCGGATACGGGAAAAGTTCAACAGTTGGAGCCGGCTCATTCTGTCGGATCGCAATTCGCGTAATTTATTTCTATTTCTGCTGCTTAATTTAAGCTTTGCCTTCGTCGAACTAATGTATGGCATATGGACGAACAGTTTAGGTTTGATCTCCGATTCGTTCCACATGTTCTTCGACTGATACCGGGCTGTTGGCCGGTTTGGGCTGCGTCCGTTATTACCAAATGGCGTGCAAACGAAAAGTATTCCCTACGGGTACGTTTCGTGCTGAAGTGCTCCGCCGGGTTTGTCAACAGTCCTCTTTTTGCTGGTTATCGCCTTCTTCATTATGTCCGAGGCAG] [+] EMBL BM592480 [CCGGTGTCGTGATATCGGTCTGTAATACCGCTATGATCGGGCTACCGTCCACTACGTACATGCACAACATTTTGAGGAAATAGAAAAAATAAAATGAGGAATCACTGATTTTTCCCATAGACTACTGTTGAAGGTACCATACGCAATCGCCCTTGCGCTGCTGGATCGCGGTGATATCGACCAATTCATTCCCGCCCTATTGTCTACGTCAGTACCTTAAAAGTTTTCCCTACCGGGCTTATCAGTTGTGTGGTTCGTAAAAAAAAAAAAAAAAGAAGCTTACTACAATGCTACCATTAACGCATAAAGATTCACGTGGATGCGGCTACCGGATACGGGAAAAGTTCAACAGTTGGAGCCGGCTCATTCTGTCGGATCGCAATTCGCGTAATTTATTTCTATTTCTGCTGCTTAATTTAAGCTTTGCCTTCGTCGAACTAATGTATGGCATATGGACGAACAGTTTAGGTTTGATC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6949#0 CCGCCCACGCGTCCGAAAAAAACTACACCGCTCAGACAGCAATTACGGATTCTTGGCCAG 60 consensus_6949#1 ------------------------------------------------------------ consensus_6949#0 CCGTCCAACAGACTCGCAGGAGTGAAATAAATAGCTGAAATGTGTTCCAAACGATGTTGA 120 consensus_6949#1 -------------CCGGTGTCGTGATATCGGT--CTGTAAT---------ACCGCTATGA 36 ** * **** ** * *** *** ** *** consensus_6949#0 TCGTGGAAGTATATCACCACAGCCGTGCGCACTACG--GATCGAACCGTTTAATCGCCAC 178 consensus_6949#1 TCGGGCTACCGT-CCACTACGTACATGCACAACATTTTGAGGAAATAGAAAAAATAAAAT 95 *** * * * *** ** * *** ** * ** ** * ** * consensus_6949#0 ATAGG--CACTGATTTTTCCCATAGACTACTGTTGAAGGTACCATACGCAATCGCCCTTG 236 consensus_6949#1 GAGGAATCACTGATTTTTCCCATAGACTACTGTTGAAGGTACCATACGCAATCGCCCTTG 155 * ***************************************************** consensus_6949#0 CGCTGCTGGATCGCGGTGATATCGACCAATTCATTCCCGCCCTATTGTCTACGTCAGTAC 296 consensus_6949#1 CGCTGCTGGATCGCGGTGATATCGACCAATTCATTCCCGCCCTATTGTCTACGTCAGTAC 215 ************************************************************ consensus_6949#0 CTTAAAAGTTTTCCCTACCGGGCTTATCAGTTGTGTGGTTCGTAAAAAGGAAAAAAAA-G 355 consensus_6949#1 CTTAAAAGTTTTCCCTACCGGGCTTATCAGTTGTGTGGTTCGTAAAAAAAAAAAAAAAAG 275 ************************************************ ******** * consensus_6949#0 AAGCTTACTACAATGCTACCATTAACGCATAAAGATTCACGTGGATGCGGCTACCGGATA 415 consensus_6949#1 AAGCTTACTACAATGCTACCATTAACGCATAAAGATTCACGTGGATGCGGCTACCGGATA 335 ************************************************************ consensus_6949#0 CGGGAAAAGTTCAACAGTTGGAGCCGGCTCATTCTGTCGGATCGCAATTCGCGTAATTTA 475 consensus_6949#1 CGGGAAAAGTTCAACAGTTGGAGCCGGCTCATTCTGTCGGATCGCAATTCGCGTAATTTA 395 ************************************************************ consensus_6949#0 TTTCTATTTCTGCTGCTTAATTTAAGCTTTGCCTTCGTCGAACTAATGTATGGCATATGG 535 consensus_6949#1 TTTCTATTTCTGCTGCTTAATTTAAGCTTTGCCTTCGTCGAACTAATGTATGGCATATGG 455 ************************************************************ consensus_6949#0 ACGAACAGTTTAGGTTTGATCTCCGATTCGTTCCACATGTTCTTCGACTG-TACCGGGCT 594 consensus_6949#1 ACGAACAGTTTAGGTTTGATCTCCGATTCGTTCCACATGTTCTTCGACTGATACCGGGCT 515 ************************************************** ********* consensus_6949#0 GTTGGCTGGTTTGG-CTGCGTCCGTTATTACCAAATGGCGTGCAAACGAAAAGTATTCC- 652 consensus_6949#1 GTTGGCCGGTTTGGGCTGCGTCCGTTATTACCAAATGGCGTGCAAACGAAAAGTATTCCC 575 ****** ******* ******************************************** consensus_6949#0 TACGGGTACGTT-CGTGCTGAAGTGCTC-GCCGGGTTTGTCAACAGTC-TCTTTTTGCTG 709 consensus_6949#1 TACGGGTACGTTTCGTGCTGAAGTGCTCCGCCGGGTTTGTCAACAGTCCTCTTTTTGCTG 635 ************ *************** ******************* *********** consensus_6949#0 TTTATCGCCTTCTTCATTATGTCCGAGGCAGTAGAGCGCGCTATAGAGCCACCGGAAGTG 769 consensus_6949#1 GTTATCGCCTTCTTCATTATGTCCGAGGCAG----------------------------- 666 ****************************** consensus_6949#0 AAACACGAACGATTGTTCGTCGTATCGGTGCTCGGACTGTTGGTAAACTTGGTCGGTATC 829 consensus_6949#1 ------------------------------------------------------------ consensus_6949#0 TATGCATTCCAGCACGGTGGAGCACACGGACATTCGCATGGCGGCGGTGGTGGCCACGGG 889 consensus_6949#1 ------------------------------------------------------------ consensus_6949#0 CATTCGCACGGCGGCGGAGGTGGTGGAAGTCATGGACATTCCCATGGGGGGTGGTATGAA 949 consensus_6949#1 ------------------------------------------------------------ consensus_6949#0 TCATCACAGTCACGATACTCACAGCCTGCTGTCCA 984 consensus_6949#1 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||