These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6957#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 985 fasta sequence [ATTAGCATTACTTAAAATGAAAAGCTACGGCCAAGAAATAGAAATTACGTATTTAAATAGGCAACCATTATTGTTTTGTCAAAACCAAATCATGTAGAATACATTTCGGAACATGAAAAATATATTAACACACTAATAACCCATCTGTGGATATGCGAAACCACTAACAATTACATTTAATGAACTAAATCGTGTGAAGATTAAACAATTGTACTCGAACTTTATACAAATAGTACCAAAACATTGACTTAGCTGAAGCATCGAACTCATCGGTCAACCGTGGAAGTGGATAACTGGCAGTCCAGGTCGCTGAATATTTGCGTCTGATTAACGCAACAATGAACAAGCTGGTTGACGGCAACGACCTCCAATTTAGAATCAATGAGAGCAGTTTAACAAACGTTTGCAATCCTCACCAACTCCAAAGACGAGATAATCAAGAGAAAACATCCGCATTCTACTGACATTGAAGCTATCAAGAGCCCATATTTAACATCAACGGCATGATTCACCTCATAGAATTCATCCAAAACACAGCAGTTTGGGTACACGAATCTGTTACCAACAGTAAACTCCTCACAGCACCACACGAGATGAGTTTGATACGTTCCACACTAGCAGAACAAGGCGCCGTGATAGACATTCCCAGTACATCCCAGTTAGAAACAGAACAAGCTTCAGAGCTATAGCTGAACATCTAATATTACTGAATAATGGTAACAGCATCAGCTAACGGAGCAAATGCGTTCCTAACAATAGAACAATCCAT-GGGATCTATTTGATCCATGG-GAGTTCTCCAACTGCACAGTTATAATTGGGAAAGATACACCTTCTCATCAAAAACGCCTTCGATTACATCGGAACCATATTGAGTGCCCAAGCAGCAATACCGCCAAATACCAATAACCTTTGGCAACAATGTCATTAATAGGATACGTTAAGCTTCTGCAATTCAGCAACATCGATTACTGGAAGTGGAGTATAC] [+] EMBL AGA282901 [ATTAGCATTACTTAAAATGAAAAGCTACGGCCAAGAAATAGAAATTACGTATTTAAATAGGCAACCATTATTGTTTTGTCAAAACCAAATCATGTAGAATACATTTCGGAACATGAAAAATATATTAACACACTAATAACCCATCTGTGGATATGCGAAACCACTAACAATTACATTTAATGAACTAAATCGTGTGAAGATTAAACAATTGTACTCGAACTTTATACAAATAGTACCAAAACATTGACTTAGCTGAAGCATCGAACTCATCGGTCAACCGTGGAAGTGGATAACTGGCAGTCCAGGTCGCTGAATATTTGCGTCTGATTAACGCAACAATGAACAAGCTGGTTGACGGCAACGACCTCCAATTTAGAATCAATGAGAGCAGTTTAACAAACGTTTGCAATCCTCACCAACTCCAAAGACGAGATAATCAAGAGAAAACATCCGCATTCTACTGACATTGAAGCTATCAAGAGCCCATATTTAACATCAACGGCATGATTCACCTCATAGAATTCATCC AAACACAGCAGTTTGGGTACACGAATCTGTTACCAACAGTAAACTCCTCACAGCACCACACGAGATGAGTTTGATACGTTCCACACTAGCAGAACAAGGCGCCGTGATAGACATTCCCAGTACATCCCAGTTAGAAACAGAACAAGCTTCAGAGCTATAGCTGAACATCTAATATTACTGAATAATGGTAACAGCATCAGCTAACGGAGCAAATGCGTTCCTAACAATAGAACCATCCAT GG ] [+] EMBL BM653149 [ ccgGAAACAACTAACAATTACATTTAATGAACTAAATCGTGTGAAGATTAAACAATTGTACTCGAACTTTATACAAATAGTACCAAAACATTGACTTAGCTGAAGCATCGAACTCATCGGTCAACCGTGGAAGTGGATAACTGGCAGTCCAGGTCGCTGAATATTTGCGTCTGATTAACGCAACAATGAACAAGCTGGTTGACGGCAACGACCTCCAATTTAGAATCAATGAGAGCAGTTTAACAAACGTTTGCAATCCTCACCAACTCCAAAGACGAGATAATCAAGAGAAAACATCCGCATTCTACTGACATTGAAGCTATCAAGAGCCCATATTTAACATCAACGGCATGATTCACCTCATAGAATTCATCCAAAACACAGCAGTTTGGGTACACGAATCTGTTACCAACAGTAAACTCCTCACAGCACCACACGAGATGAGTTTGATACGTTCCACACTAGCAGAACAAGGCGCCGTGATAGACATTCCCAGTACATCCTAGTTAGAAACAGAACAAGCTTCAAAGCTGTAGCTGAACATCTAATATTACTGAATAATGGTAACAGCATCAGCTAACGGAGCAAATGCGTTCCTAACAATAGAACAATCCATGGGGATCTATTTGATCCATGGAGAGTTCTCCAAATGCACAGTTATAATTGGGA ] [+] EMBL BX607575 [ AAATAGTACCAAAACATTGACTTAGCTGAAGCATCGAACTCATCGGTCAACCGTGGAAGTGGATAACTGGCAGTCCAGGTCGTTGAATATTTGCGTCTGATTAACGCAACAATGAACAAGCTGGTTGACGGCAACGACCTCCAATTTAGAATCAATGAGAGCAGTTTAACAAACGTTTGCAATCCTCACCAACTCCAAAGACGAGATAATTAAGAGAAAACATCCGCATTCTACTGACATTGAAGCTATCAATAGCCCATATTTAACATCAACGGCATGATTCACCTCATAGAATTCATCCAAAACACAGCAGTTTGGGTACACGAATCTGTTACCAACAGTAAACTCCTCACAGCACCACACGAGATGAGTTTGATACGTTCCACACTACCAGAACAAGGCGCCGGGATAGACATTCCCAGTACATCCCAGTTAGAAACAGAACAAGCTTCAGAGCTGTAGCTGAACATCTAATATTACTGAATAATGGTAACAGCATCAGCTAACGGAGCAAATGCGTTCCTAACAATAGAACAATCCAT GGGATCTATTTGATCCATGG GAGTTCTCCAACTGCACAGTTATAATTGGGAAAGATACACCTTCTCATCAAAAACGCCTTCGATTACATCGGAACCATATTGAGTGCCCAAGCAGCAATACCGCCAAATACCAATAACCTTTGGCAACAATGTCATTAATAGGATACGTTAAGCTTCTGCAATTCAGCAACATCGATTACTGGAAGTGGAGTATAC] [+] EMBL BX617869 [ AAACATCCGCATTCTACTGACATTGAAGCTATCAAGAGCCCATATTTAACATCAACGGCATGATTCACCTCATAGAATTCATCCAAAACACAGCAGTTTGGGTACACGAATCTGTTACCAACAGTAAACTCCTCACAGCACCACACGAGATGAGTTTGATACGTTCCACACTAGCAGAACAAGGCGCCGTGATAGACATTCCCAGTACATCCCAGTTAGAAACAGAACAAGCTTCAGAGCTATAGCTGAACATCTAATATTACTGAATAATGGTAACAGCATCAGCTAACGGAGCAAATGCGTTCCTAACAATAGAACAATCCAT GGGATCTATTTGATCCATGG GAGTTCTCCAACTGCACAGCTATAATTGGGAAAGAca ] consensusID : consensus_6957#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGTCTGAAACAACGTTAAGCTTCTGCAATTCAGCAACATCGATTACTGGAAGTGGAGTATACCGGGAGGAACACTGAATACCATCGTAACAATGCTTACGTTCACATTTTACCTCGTTATTTACTGCAGAAGAACAATAGGGACCATCGATAGAGCATTAAACTCTAAGAAAAGGCGAATCGCAAAGCGATACCTTAAACGCGTCTTCACCCGCCGGAGGAGTTACGTGCCCAGCTACTGCCACGTGTGCACGCGCTCCCCAGCAACAGTAACGCAACACCAATGTGCTGCGTATCCGGCAACAGCAACCTGATTGCTAACCTGACGCATAATCGATCGAACCAGCCAACAAGCCAGCCAACCAGCCAGCCAACCAGCCAGCCAACCAGCCATCCAACCAGCCATCCAACCAGCCAGCCAACCAGCCAGCCAACCAGCCAGCCAACCAGCCAGCCATCCAGCTAGTCAACCGACCCGTCAGCGAGCCAACAGTTCGTGAAACACTCCATGAGTAAAGAATAAAGTTTTGTTT] [+] EMBL BM582734 [CCGCCCACGCGTCCGCCCACGCGTCCGTCTGAAACAACGTTAAGCTTCTGCAATTCAGCAACATCGATTACTGGAAGTGGAGTATACCGGGAGGAACACTGAATACCATCGTAACAATGCTTACGTTCACATTTTACCTCGTTATTTACTGCAGAAGAACAATAGGGACCATCGATAGAGCATTAAACTCTAAGAAAAGGCGAATCGCAAAGCGATACCTTAAACGCGTCTTCACCCGCCGGAGGAGTTACGTGCCCAGCTACTGCCACGTGTGCACGCGCTCCCCAGCAACAGTAACGCAACACCAATGTGCTGCGTATCCGGCAACAGCAACCTGATTGCTAACCTGACGCATAATCGATCGAACCAGCCAACAAGCCAGCCAACCAGCCAGCCAACCAGCCAGCCAACCAGCCATCCAACCAGCCATCCAACCAGCCAGCCAACCAGCCAGCCAACCAGCCAGCCAACCAGCCAGCCATCCAGCTAGTCAACCGACCCGTCAGCGAGCCAACAGTTCGTGAAACACTCCATGAGTAAAGAATAAAGTTTTGTTT] consensusID : consensus_6957#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence [CACATCAAAAACGCCTTCGATTACATCGGAATCATATTGAGTGCCCAAGCAGCAATACCGCCAAATACCAATAACCTTTGGCAACAATGTCATTAATAGGATGATTCTGGAACAACGTAAAGCTTCTGCAATTCAGCAACATCGATTACTGGAAGTGGAGTATACCGGGAGGAACACTGAATCCCATCGTAACAATGCTTACGTTCACATTTTACCTCGTTATTTACTGCAGAAGAACAATAGGGACCATCGATAGAGCATTAAACTCTAAGAAAAGGCGAATCGCAAAGCGATACCTTAAACGCGTCTTCACCCGCCGGAGGAGTTACGTGCCCAGCTACTGCCACGTGTGCACGCGCTCCCCAGCAACAGTAACGCAACACCAATGTGCTGCGTATCCGGCAACAGCAACCTGATTGCTAACCTGACGCATAATCGATCGAACCAGCCAACAAGCCAGCCAACCAGCCAGCCAACCAGCCA] [+] EMBL BX609507 [CACATCAAAAACGCCTTCGATTACATCGGAATCATATTGAGTGCCCAAGCAGCAATACCGCCAAATACCAATAACCTTTGGCAACAATGTCATTAATAGGATGATTCTGGAACAACGTAAAGCTTCTGCAATTCAGCAACATCGATTACTGGAAGTGGAGTATACCGGGAGGAACACTGAATCCCATCGTAACAATGCTTACGTTCACATTTTACCTCGTTATTTACTGCAGAAGAACAATAGGGACCATCGATAGAGCATTAAACTCTAAGAAAAGGCGAATCGCAAAGCGATACCTTAAACGCGTCTTCACCCGCCGGAGGAGTTACGTGCCCAGCTACTGCCACGTGTGCACGCGCTCCCCAGCAACAGTAACGCAACACCAATGTGCTGCGTATCCGGCAACAGCAACCTGATTGCTAACCTGACGCATAATCGATCGAACCAGCCAACAAGCCAGCCAACCAGCCAGCCAACCAGCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6957#1 ------------------------------------------------------------ consensus_6957#2 ------------------------------------------------------------ consensus_6957#0 ATTAGCATTACTTAAAATGAAAAGCTACGGCCAAGAAATAGAAATTACGTATTTAAATAG 60 consensus_6957#1 ------------------------------------------------------------ consensus_6957#2 ------------------------------------------------------------ consensus_6957#0 GCAACCATTATTGTTTTGTCAAAACCAAATCATGTAGAATACATTTCGGAACATGAAAAA 120 consensus_6957#1 ------------------------------------------------------------ consensus_6957#2 ------------------------CACATCAAAAACGCCTTCGATTACATCGGAATCATA 36 consensus_6957#0 TATATTAACACACTAATAACCCATCTGTGGATATGCGAAACCACTAACAATTACATTTAA 180 consensus_6957#1 -----------------------------------------CCGCCCACGCGTCCGCCCA 19 consensus_6957#2 TTGAGTGCCCAAGCAGCAATACCGCCAAATACCAATAACCTTTGGCAACAATGTCATTAA 96 consensus_6957#0 TGAACTAAATCGTGTGAAGATTAAACAATTGTACTCGAACTTTATACAAATAGT-ACCAA 239 * * consensus_6957#1 CGCGTCCGT-CTGAAACAACGTTAAGCT--TCTGCAATTCAGCAACATCGATTACTGGAA 76 consensus_6957#2 TAGGATGATTCTGGAACAACGTAAAGCT--TCTGCAATTCAGCAACATCGATTACTGGAA 154 consensus_6957#0 AACATTGACTTAGCTGAAGCATCGAACTCATCGGTCAACCGTGGAAGTGGATAACTGGCA 299 * * * * * ** ** * * * * * *** ***** * consensus_6957#1 GTGGAGTATACCGGG-AGGAACACTGAATACCATCGTAACAATGCTTACGTTCACATTTT 135 consensus_6957#2 GTGGAGTATACCGGG-AGGAACACTGAATCCCATCGTAACAATGCTTACGTTCACATTTT 213 consensus_6957#0 GTCCAGGTCGCTGAATATTTGCGTCTGAT--TAACGCAACAATGAACAAGCTGGTTGACG 357 ** ** * * * * ** * ** ******* * * * consensus_6957#1 ACCTCGTTATTTACTGCAGAAGAACAATAGGGACCATCGATAGAGCATT---AAACTCTA 192 consensus_6957#2 ACCTCGTTATTTACTGCAGAAGAACAATAGGGACCATCGATAGAGCATT---AAACTCTA 270 consensus_6957#0 GCAACGACCTCCAATTTAGAAT--CAATGAGAGCAGTTTAACAAACGTTTGCAATCCTCA 415 * ** * * * **** **** * * * * * * ** ** * * consensus_6957#1 AGAA-----AAGGCGA-ATCGCAAAGCGATACCTTAAACGCGTCTTCACCCGCCGGAGGA 246 consensus_6957#2 AGAA-----AAGGCGA-ATCGCAAAGCGATACCTTAAACGCGTCTTCACCCGCCGGAGGA 324 consensus_6957#0 CCAACTCCAAAGACGAGATAATCAAGAGAAAACATCCGCAT-TCTACTGACATTGAAGCT 474 ** *** *** ** *** ** * * * * *** * * * ** consensus_6957#1 GTTACGTGCCCAGCTACTGCCACGTGTGCACGCGCTCCCCAGCAACAGTAACGCAACAC- 305 consensus_6957#2 GTTACGTGCCCAGCTACTGCCACGTGTGCACGCGCTCCCCAGCAACAGTAACGCAACAC- 383 consensus_6957#0 ATCAAGAGCCCATATTTAACATCAACGGCATGATTCACCTCATAGAATTCATCCAAAACA 534 * * * ***** * * * *** * ** * * * * *** ** consensus_6957#1 CAATGTGCTGCGTATCCGG---------CAACAGCAACCTGATTGCTA----ACCTGACG 352 consensus_6957#2 CAATGTGCTGCGTATCCGG---------CAACAGCAACCTGATTGCTA----ACCTGACG 430 consensus_6957#0 CAGCAGTTTGGGTACACGAATCTGTTACCAACAGTAAACTCCTCACAGCACCACACGAGA 594 ** ** *** ** ****** ** ** * * ** ** consensus_6957#1 CATAATCGAT------CGAACCAGCC-AACAAGCCAGCCAACCAGCCAGCCAACCAGCCA 405 consensus_6957#2 CATAATCGAT------CGAACCAGCC-AACAAGCCAGCCAACCAGCCAGCCAACCAGCCA 483 consensus_6957#0 TGAGTTTGATACGTTCCACACTAGCAGAACAAGGCGCCGTGATAGACATTCCCAGTACAT 654 * *** * ** *** ****** * * ** ** * * consensus_6957#1 GCCAACCAGCCATCCAACCAGCCATCCAACCAGCCAGCCAACCAGCCAGCCAACCAGCCA 465 consensus_6957#2 ------------------------------------------------------------ consensus_6957#0 CCCAGTTAGAAACAGAACAAGCTTCAGAGCTA--TAGCTGAACATCTAATATTACTGAAT 712 consensus_6957#1 GCCAACCAGCCAGCCATCCAGCTAGTCAACCGACCCGTCAGCGAGCCAACAGTTCGTGAA 525 consensus_6957#2 ------------------------------------------------------------ consensus_6957#0 AATGGTAACAGCATCAGCTAACGGAGCAAATGCGTTCCTAACAATAGAACAATCCATGGG 772 consensus_6957#1 ACACTCCATGAGTAAAGAATAAAGTTTTGTTT---------------------------- 557 consensus_6957#2 ------------------------------------------------------------ consensus_6957#0 AT-CTATTTGATCCATGGGAGTTCTCCAACTGCACAGTTATAATTGGGAAAGATACACCT 831 consensus_6957#1 ------------------------------------------------------------ consensus_6957#2 ------------------------------------------------------------ consensus_6957#0 TCTCATCAAAAACGCCTTCGATTACATCGGAACCATATTGAGTGCCCAAGCAGCAATACC 891 consensus_6957#1 ------------------------------------------------------------ consensus_6957#2 ------------------------------------------------------------ consensus_6957#0 GCCAAATACCAATAACCTTTGGCAACAATGTCATTAATAGGATACGTTAAGCTTCTGCAA 951 consensus_6957#1 ---------------------------------- consensus_6957#2 ---------------------------------- consensus_6957#0 TTCAGCAACATCGATTACTGGAAGTGGAGTATAC 985 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||