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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6961#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1432 fasta sequence
[GGCAGATCGCACGAGGTTAGCTGGCTGCATTGGTAGAGGGCGCGTCTGTGCTGATGTGAAAGATCCGCGTACCGACGCACGTGACGACGAAGTGCCGTTTTGCCGCTGCGATCGTTAAACCAAAGCGCGGGAAGGGTTTGGTGCCGTGAAAACAGTGTTGCTTTCATCTCCACCTGCTGTGACAGAACCGCTATCCCAACCATGGGCAAAACGGAACAACCGCTGATCGTGCGGTACAAAAACCAATGGTACGATCTGACAGAGTTTGCCCACAAGCATCCGGGCGGGAAAAATTCGCTCACCGGCCTGCACGAGAAGGACATGGCGGAGCGGTTCGATCGGGCACCGGGCCACTCTCAGGCC-GCCAAATACTTGATGAAAGAGTACCAAA-TTAAGCACGATCCCAAACAGAAGCAACAGAACGGACACTC-TCTACCGAACGGTACCAAAGCGACCGTGAACGGGGCAACGCTGCGGAATGGGACCAAACCGACCGGCAACGGATTACACAGCACCAAACCGCACGGCGAGGGACATACCACGGCAGTGACCGCGAACGGTGATGTAGCGCACCTTACCGACGACAGTATGGAGTACTTGGTGGACTGGAGCAAACCGATGCTGCTTCAAATCTACCGGCTGGGCGACAAGTACGCCGAATGGGTGAACAAACCCGTCGATCGCGAGCTACGCCTGTTCGGACCGACCTGGGTGGAAAACCTTACCCGCACGCCCTGGTGGATAGTGNCCGCGTTCTGGATACCGGNCATCCTGTACCTGATCGTGCGCCACGGTGCACAGCAGGTGGCCACCGGCCGGGGGTTTGCCAGCGCGAGCGAATCGTTCCGCACGGTCGAGCTTTACCTGCATCTAGCGATCGGGGCGTTCGCGTGGACGCTGCTCGAGTACTCGCTCCACCGGTGGGTGTTCCATCTCGACCCGAAGGGCAACCGGGTGCTGCAGACGTTCCACTTTCTGATCCACGGCCAGCACCACAAGGTGCCGTTCGATCCGCACCGGTTAGTGTTTCCGGTACCGCCGGCCCTGCTGCTGACCAGCCTGTTCTACCAGCCGGTGTACTATGCATTCCCCTATCCGCGGCTAACGCTTGCCGGTGGACTGATCGGCTATCTCGTATACGATATGATCCACTACTATCTACACTATGGCAGCCCAGCCGGGGGCCATCTGTATCATATGAAGCGATACCATTACTCCCATCACTTTGTCCATCACGATCAAGGTTACGGTATTAGCAGCGACTTCTGGGACAAACTGTTCGGAACGCGCATCATGCTGCGAAAGTTAAAGTATCTACTGAAGTGGTAAAACTGTGCCAGCAATCAATTCCTTCTTTCGGGTCGTTCAATTCCAATGGGATGGTGGTGCAAAACACTACTAAACTGGGCTGGTTTTTTTTTGGACTTTTTAA]
[+] EMBL BX467224 [GGCAGATCGCACGAGGTTAGCTGGCTGCATTGGTAGAGGGCGCGTCTGTGCTGATGTGAAAGATCCGCGTACCGACGCACGTGACGACGAAGTGCCGTTTTGCCGCTGCGATCGTTAAACCAAAGCGCGGGAAGGGTTTGGTGCCGTGAAAACAGTGTTGCTTTCATCTCCACCTGCTGTGACAGAACCGCTATCCCAACCATGGGCAAAACGGAACAACCGCTGATCGTGCGGTACAAAAACCAATGGTACGATCTGACAGAGTTTGCCCACAAGCATCCGGGCGGGAAAAATTCGCTCACCGGCCTGCACGAGAAGGACATGGCGGAGCGG TCGATCGGGCACCGGGCCACTCTCAGGCCGGGCAAATACTTGATGAAAGAGTACCAAAGTTAAGCACGATCCCAAACAGAAGCAACAGAACGGACACTCGTCTACCGAACGGNACCAAAGCGACCGGGAACGGGGCA ]
[+] EMBL BX628076 [ GATGTGAAAGATCCGCGTACCGACGCACGTGACGACGAAGTGCCGTTTTGCCGCTGCGATCGTTAAACCAAAGCGCGGGAAGGGTTTGGTGCCGTGAAAACAGTGTTGCTTTCATCTCCACCTGCTGTGACAGAACCGCTATCCCAACCATGGGCAAAACGGAACAACCGCTGATCGTGCGGTACAAAAACCAATGGTACGATCTGACAGAGTTTGCCCACAAGCATCCGGGCGGGAAAAATTCGCTCACCGGCCTGCACGAGAAGGACATGGCGGAGCGGTTCGATCGGGCACCGGGCCACTCTCAGGCC GCCAAATACTTGATGAAAGAGTACCAAA TTAAGCACGATCCCAAACAGAAGCAACAGAACGGACACTC TCTACCGAACGGTACCAAAGCGACCGTGAACGGGGCAACGCTGCGGAATGGGACCAAACCGACCGGCAACGGATTACACAGCACCAAACCGCACGGCGAGGGACATACCACGGCAGTGACCGCGAACGGTGATGTAGCGCACCTTACCGACGACAGTATGGAGTACTTGGTGGACTGGAGCAAACCGATGCTGCTTCAAATCTACCGGCTGGGCGACAAGTACGCCGAATGGGTGAACAAACCCGTCGATCGCGAGCTACGCCTGTTCGGACCGACCTGGGTGGAAAACCTTACCCGCACGCCCTGGTGGATAGTGNCCGCGTTCTGGATACCGGNCATCCTGTACCTGATCGTGCGCCACG ]
[+] EMBL BX620227 [ GTACCGACGCACGTGACGACGAAGTGCCGTTTTGCCGCTGCGATCGTTAAACCAAAGCGCGGGAAGGGTTTGGTGCCGTGAAAACAGTGTTGCTTTCATCTCCACCTGCTGTGACAGAACCGCTATCCCAACCATGGGCAAAACGGAACAACCGCTGATCGTGCGGTACAAAAACCAATGGTACGATCTGACAGAGTTTGCCCACAAGCATCCGGGCGGGAAAAATTCGCTCACCGGCCTGCACGAGAAGGACATGGCGGAGCGGTTCGATCGGGCACCGGGCCACTCTCAGGCC GCCAAATACTTGATGAAAGAGTACCAAA TTAAGCACGATCCCAAACAGAAGCAACAGAACGGACACTC TCTACCGAACGGTACCAAAGCGACCGTGAACGGGGCAACGCTGCGGAATGGGACCAAACCGACCGGCAACGGATTACACAGCACCAAACCGCACGGCGAGGGACATACCACGGCAGTGACCGCGAACGGTGATGTAGCGCACCTTACCGACGACAGTATGGAGTACTTGGTGGACTGGAGCAAACCGATGCTGCTTCAAATCTACCGGCTGGGCGACAAGTACGCCGAATGGGTGAACAAACCCGTCGATCGCGAGCTACGCCTGTTCGGACCGACCTGGGTGGAAAACCTTACCCGCACGCCCTGGTGGATAGTGCCCGCGTTCTGGATACCNGGCATCCTGTACC ]
[+] EMBL BM628711 [ ccgCCGCGTTCTGGATACCGGCCATCCTGTACCTGATCGTGCGCCACGGTGCACAGCAGGTGGCCACCGGCCGGGGGTTTGCCAGCGCGAGCGAATCGTTCCGCACGGTCGAGCTTTACCTGCATCTAGCGATCGGGGCGTTCGCGTGGACGCTGCTCGAGTACTCGCTCCACCGGTGGGTGTTCCATCTCGACCCGAAGGGCAACCGGGTGCTGCAGACGTTCCACTTTCTGATCCACGGCCAGCACCACAAGGTGCCGTTCGATCCGCACCGGTTAGTGTTTCCGGTACCGCCGGCCCTGCTGCTGACCAGCCTGTTCTACCAGCCGGTGTACTATGCATTCCCCTATCCGCGGCTAACGCTTGCCGGTGGACTGATCGGCTATCTCGTATACGATATGATCCACTACTATCTACACTATGGCAGCCCAGCCGGGGGCCATCTGTATCATATGAAGCGATACCATTACTCCCATCACTTTGTCCATCACGATCAAGGTTACGGTATTAGCAGCGACTTCTGGGACAAACTGTTCGGAACGCGCATCATGCTGCGAAAGTTAAAGTATCTACTGAAGTGGTAAAACTGTGCCAGCAATCAATTCCTTCTTTCGGGTCGTTCAATTCCAATGGGATGGTGGTGCAAAACACTACTAAACTGGGCTGGTTTTTTTTTGGACTTTTTAA]
consensusID : consensus_6961#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence
[CAAGAAATCGGCACGAGGTNGGACTGGGCGACAGTACGCCGAATGGGTGAACAACCGTCGATCGCGAGCTGCGCCTGTTCGGACCGACCTGGGTGGAAAACCTTACCCGCACGCCCTGGTGAATAGTGCCCGCGGTNCTGGATACCGGGCCATTCCTGTACCTAATCGTTGCGCAACGGTTCCACAGCAGGTTGGCCACCGGCCGGGGGGGTTTTGCCAAGCGCCGAAGCGAATTCGTTTCCGCAACGGTCGGAGCTTTACCTTGCAATTCTAGCGATCGGGGCGTTCGCGTGGACGCTGCTCGAGTTACTCCTCCACCGGTTGGGTGTTCGATCTCGACCCGGAAAGGGCCAACCGGGTAGCTGCAAGACGTTCCACTTTTCTGATACACGGCCAGGCACCACAAGGTGCCGTTCGATTCCCGCACCGGTTTAGTGTTTCCCGGTACCCGGCGGCCCTGCTGTTAACCAGGCCTTGTTCTAACCAGCCGGGTTGTACTATTGCATTCCACCTAACCCGCGGGATAACCGGCTTGCCGGGTGGACTGATCGGGCTATCTCGTATTAGCGATTAATGATCCACGTACTATCTACACTATGGCNAAGCCCACCGGGGGCCATCTGTATCATATG]
[+] EMBL BX468651 [CAAGAAATCGGCACGAGGTNGGACTGGGCGACAGTACGCCGAATGGGTGAACAACCGTCGATCGCGAGCTGCGCCTGTTCGGACCGACCTGGGTGGAAAACCTTACCCGCACGCCCTGGTGAATAGTGCCCGCGGTNCTGGATACCGGGCCATTCCTGTACCTAATCGTTGCGCAACGGTTCCACAGCAGGTTGGCCACCGGCCGGGGGGGTTTTGCCAAGCGCCGAAGCGAATTCGTTTCCGCAACGGTCGGAGCTTTACCTTGCAATTCTAGCGATCGGGGCGTTCGCGTGGACGCTGCTCGAGTTACTCCTCCACCGGTTGGGTGTTCGATCTCGACCCGGAAAGGGCCAACCGGGTAGCTGCAAGACGTTCCACTTTTCTGATACACGGCCAGGCACCACAAGGTGCCGTTCGATTCCCGCACCGGTTTAGTGTTTCCCGGTACCCGGCGGCCCTGCTGTTAACCAGGCCTTGTTCTAACCAGCCGGGTTGTACTATTGCATTCCACCTAACCCGCGGGATAACCGGCTTGCCGGGTGGACTGATCGGGCTATCTCGTATTAGCGATTAATGATCCACGTACTATCTACACTATGGCNAAGCCCACCGGGGGCCATCTGTATCATATG]
consensusID : consensus_6961#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence
[GCCAAGAATCCGCACGANTGAGAACGGACACTCTCTACCGAACGGTACCAAAGCGACCGTAACGGGGCAACGCTGCGGAATGGGACCAAACCGACCGGCAACGGATTACACAGCACCAAACCGCACGGCGAGGGACATACCACGGCAGTGACCGCGAACGGTGATGTAGCGCACCTTACCGACGACAGTATGGAGTACTTGGTGGACTGGAGCAAACCGATGCTGCTTCAAGATCTACCGGCTGGGGCGACAAGTACGCCGAATGGGTGAACAAAGCCGTCGATCGCGAGCTACGCCTGTTCGGACCGACCTGGGTGGAAAACCTTACACCGCACGCCGCTGGGTGGATAGTGGCCGCGGTTCTGGATACCGGCCATCGCTGTAGCTGACTCGTGCGCCGACG]
[+] EMBL BX469813 [GCCAAGAATCCGCACGANTGAGAACGGACACTCTCTACCGAACGGTACCAAAGCGACCGTAACGGGGCAACGCTGCGGAATGGGACCAAACCGACCGGCAACGGATTACACAGCACCAAACCGCACGGCGAGGGACATACCACGGCAGTGACCGCGAACGGTGATGTAGCGCACCTTACCGACGACAGTATGGAGTACTTGGTGGACTGGAGCAAACCGATGCTGCTTCAAGATCTACCGGCTGGGGCGACAAGTACGCCGAATGGGTGAACAAAGCCGTCGATCGCGAGCTACGCCTGTTCGGACCGACCTGGGTGGAAAACCTTACACCGCACGCCGCTGGGTGGATAGTGGCCGCGGTTCTGGATACCGGCCATCGCTGTAGCTGACTCGTGCGCCGACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6961#0 GGCAGATCGCACGAGGTTAGCTGGCTGCATTGGTAGAGGGCGCGTCTGTGCTGATGTGAA 60
consensus_6961#2 ------------------------------------------------------------
consensus_6961#1 ------------------------------------------------------------
consensus_6961#0 AGATCCGCGTACCGACGCACGTGACGACGAAGTGCCGTTTTGCCGCTGCGATCGTTAAAC 120
consensus_6961#2 ------------------------------------------------------------
consensus_6961#1 ------------------------------------------------------------
consensus_6961#0 CAAAGCGCGGGAAGGGTTTGGTGCCGTGAAAACAGTGTTGCTTTCATCTCCACCTGCTGT 180
consensus_6961#2 ------------------------------------------------------------
consensus_6961#1 ------------------------------------------------------------
consensus_6961#0 GACAGAACCGCTATCCCAACCATGGGCAAAACGGAACAACCGCTGATCGTGCGGTACAAA 240
consensus_6961#2 ------------------------------------------------------------
consensus_6961#1 ------------------------------------------------------------
consensus_6961#0 AACCAATGGTACGATCTGACAGAGTTTGCCCACAAGCATCCGGGCGGGAAAAATTCGCTC 300
consensus_6961#2 ------------------------------------------------------------
consensus_6961#1 ------------------------------------------------------------
consensus_6961#0 ACCGGCCTGCACGAGAAGGACATGGCGGAGCGGTTCGATCGGGCACCGGGCCACTCTCAG 360
consensus_6961#2 ------------------------------------------------------------
consensus_6961#1 ------------------------------------------------------------
consensus_6961#0 GCCGCCAAATACTTGATGAAAGAGTACCAAATTAAGCACGATCCCAAACAGAAGCAACAG 420
consensus_6961#2 ----------------------------------GCCAAGAATCCGCACGANTG----AG 22
consensus_6961#1 -----------------------------------CAAGAAATCGGCACGAGGTN---GG 22
* * * ** *
consensus_6961#0 AACGGAC-ACTCTCTACCGAACGGTACCAAAGCGACCGTGAACGGGGCAACGCTGCGGAA 479
consensus_6961#2 AACGGAC-ACTCTCTACCGAACGGTACCAAAGCGACCGT-AACGGGGCAACGCTGCGGAA 80
consensus_6961#1 ACTGGGCGACAGTACGCCGAATGGG---TGAACAACCGTCGATCGCGAGCTGC-GCCTGT 78
* ** * ** * ***** ** * * ***** * * * ** **
consensus_6961#0 TGGGACCAAACCGACCGGCAACGGATTACACA-GCACCAAACCGCACGG----CGAGGGA 534
consensus_6961#2 TGGGACCAAACCGACCGGCAACGGATTACACA-GCACCAAACCGCACGG----CGAGGGA 135
consensus_6961#1 TCGGACCGACCTGGGTGGAAA-ACCTTACCCGCACGCCCTGGTGAATAGTGCCCGCGGTN 137
* ***** * * * ** ** **** * * ** * * * ** **
consensus_6961#0 CATACCACGGCAGTGACCGCGAACGGTGATGTAGCGCACCTTACCGACGACAGTATGG-- 592
consensus_6961#2 CATACCACGGCAGTGACCGCGAACGGTGATGTAGCGCACCTTACCGACGACAGTATGG-- 193
consensus_6961#1 CTGGATACCGGGCCATTCCTGTACCTAATCGTTGCGCAACGGTTCCACAGCAGGTTGGCC 197
* ** * * * ** ** ***** * * ** *** ***
consensus_6961#0 AGTACTTGGTGGACTGGAGCAAA---CCGATGCTGCTTCAA-ATC-TACCGGCTGGG-CG 646
consensus_6961#2 AGTACTTGGTGGACTGGAGCAAA---CCGATGCTGCTTCAAGATC-TACCGGCTGGGGCG 249
consensus_6961#1 ACCGGCCGGGGGGGTTTTGCCAAGCGCCGAAGCGAATTCGTTTCCGCAACGGTCGGAGCT 257
* ** ** * ** ** **** ** *** * * *** ** *
consensus_6961#0 ACAAGTACGCCGAATGGGTGAACAAACCCGTCGATCGCGAGCTACGCCTGTT-CGGACCG 705
consensus_6961#2 ACAAGTACGCCGAATGGGTGAACAAAGCCGTCGATCGCGAGCTACGCCTGTT-CGGACCG 308
consensus_6961#1 TTACCT-TGCAATTCTAGCGATCGGGGCGTTCGCGTGGACGCTGCTCGAGTTACTCCTCC 316
* * ** * ** * * *** * *** * * *** * *
consensus_6961#0 ACC---TGGGTGGAAAACCTTAC-CCGCACGCCCT--GGTGGATAGTGNC---------C 750
consensus_6961#2 ACC---TGGGTGGAAAACCTTACACCGCACGCCGCTGGGTGGATAGTGGC---------C 356
consensus_6961#1 ACCGGTTGGGTGTTCGATCTCGACCCGGAAAGGGCCAACCGGGTAGCTGCAAGACGTTCC 376
*** ****** * ** *** * ** *** * *
consensus_6961#0 GCG-TTCTGG-ATAC---CGGNCATC-C----TGTACCT-GA-TCGTGCGCCACGGTGCA 798
consensus_6961#2 GCGGTTCTGG-ATAC---CGGCCATCGC----TGTAGCT-GACTCGTGCGCCGACG---- 403
consensus_6961#1 ACTTTTCTGATACACGGCCAGGCACCACAAGGTGCCGTTCGATTCCCGCACCGGTTTAGT 436
* ***** * ** * * ** * * ** * ** ** ** **
consensus_6961#0 CAGCAGGTGGCCACCGGCCGGGGGTTTGCCAGCGCGAGCGAATCGTTCCGCACGGTCGAG 858
consensus_6961#2 ------------------------------------------------------------
consensus_6961#1 GTTTCCCGGTACCCGGCGGCCCTGCTGTTAACCAGGCCTTGTTCTAACCAGCCGGGTTGT 496
consensus_6961#0 CTTTACCTGCATCTAGCGATCGGGGCGTTCGCGTGGACGCTGCTCGAGTACTCGCTCCAC 918
consensus_6961#2 ------------------------------------------------------------
consensus_6961#1 ACTATTGCATTCCACCTAACCCGCGGGATAACCGGCTTGCCGGGTGGACTGATCGGGCTA 556
consensus_6961#0 CGGTGGGTGTTCCATCTCGACCCGAAGGGCAACCGGGTGCTGCAGACGTTCCACTTTCTG 978
consensus_6961#2 ------------------------------------------------------------
consensus_6961#1 TCTCGTATTAGCGATTAATGATCCACGTACTATCTACACTATGGCNAAGCCCACCGGGGG 616
consensus_6961#0 ATCCACGGCCAGCACCACAAGGTGCCGTTCGATCCGCACCGGTTAGTGTTTCCGGTACCG 1038
consensus_6961#2 ------------------------------------------------------------
consensus_6961#1 CCATCTGTATCATATG-------------------------------------------- 632
consensus_6961#0 CCGGCCCTGCTGCTGACCAGCCTGTTCTACCAGCCGGTGTACTATGCATTCCCCTATCCG 1098
consensus_6961#2 ------------------------------------------------------------
consensus_6961#1 ------------------------------------------------------------
consensus_6961#0 CGGCTAACGCTTGCCGGTGGACTGATCGGCTATCTCGTATACGATATGATCCACTACTAT 1158
consensus_6961#2 ------------------------------------------------------------
consensus_6961#1 ------------------------------------------------------------
consensus_6961#0 CTACACTATGGCAGCCCAGCCGGGGGCCATCTGTATCATATGAAGCGATACCATTACTCC 1218
consensus_6961#2 ------------------------------------------------------------
consensus_6961#1 ------------------------------------------------------------
consensus_6961#0 CATCACTTTGTCCATCACGATCAAGGTTACGGTATTAGCAGCGACTTCTGGGACAAACTG 1278
consensus_6961#2 ------------------------------------------------------------
consensus_6961#1 ------------------------------------------------------------
consensus_6961#0 TTCGGAACGCGCATCATGCTGCGAAAGTTAAAGTATCTACTGAAGTGGTAAAACTGTGCC 1338
consensus_6961#2 ------------------------------------------------------------
consensus_6961#1 ------------------------------------------------------------
consensus_6961#0 AGCAATCAATTCCTTCTTTCGGGTCGTTCAATTCCAATGGGATGGTGGTGCAAAACACTA 1398
consensus_6961#2 ------------------------------------------------------------
consensus_6961#1 ------------------------------------------------------------
consensus_6961#0 CTAAACTGGGCTGGTTTTTTTTTGGACTTTTTAA 1432
consensus_6961#2 ----------------------------------
consensus_6961#1 ----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||