These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6962#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence [GAATCCCCGNGGTTAGCGTGGAAAAGGTTGAACCTTTTCTCTCTTTTCTTTACTTTCCCGTATGCTGTATGATTTGCGAAAATGGACCCCGGATATGGTACGATGGAGCAACCAAAGCATTCGAAGCGTTTTGTTTTTTCACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAGGGCTGCGGTAGTGGTGGTGGTGGTAGTGGAGTTAGTAGCTGTGGCGTTTGGAATGATGTGTATCCCTTNTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTATCTTTACCCAACTGGGGTGTCCACCAAACAATGCGTATCTCATATATGGCAGTGGCAATAATCGTAGCGTTCTGTTCGGCAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCAAACAGTCAACGAAGCAGCATGACGAANANAAACAAATCAGGGAACCCGCAATTTGCTTTACCATTGCTCGGTTACGTATATTTACTTATAGCAACGTATGCACGCTGCCTCTTTTCAAACACTATGCNATACTAATACGTACACGTNGAGGTGGAACAGGACATATCCGCTACTCTACTTGGTGTCGGCAGGGAATGGAAACAAACCCCAGAGNAGATGTTCNCGTGATCNTATACTTAAGTCTACACCCATATGCTTTCCTTCNGCCTGTTANACCCGNAGCCGACGGNAGCAGGTTCAACNAGTGTACGNNAATCACCATNNNCANCNCACNTTCCATTTTCTAACGCCAGATAGGCATNACGNACTNCCGGNTGTNCAGTGTGACNGG] [+] EMBL AL694983 [GAATCCCCGNGGTTAGCGTGGAAAAGGTTGAACCTTTTCTCTCTTTTCTTTACTTTCCCGTATGCTGTATGATTTGCGAAAATGGACCCCGGATATGGTACGATGGAGCAACCAAAGCATTCGAAGCGTTTTGTTTTTTCACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAGGGCTGCGGTAGTGGTGGTGGTGGTAGTGGAGTTAGTAGCTGTGGCGTTTGGAATGATGTGTATCCCTTNTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTATCTTTACCCAACTGGGGTGTCCACCAAACAATGCGTATCTCATATATGGCAGTGGCAATAATCGTAGCGTTCTGTTCGGCAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCAAACAGTCAACGAAGCAGCATGACGAANANAAACAAATCAGGGAACCCGCAATTTGCTTTACCATTGCTCGGTTACGTATATTTACTTATAGCAACGTATGCACGCTGCCTCTTTTCAAACACTATGCNATACTAATACGTACACGTNGAGGTGGAACAGGACATATCCGCTACTCTACTTGGTGTCGGCAGGGAATGGAAACAAACCCCAGAGNAGATGTTCNCGTGATCNTATACTTAAGTCTACACCCATATGCTTTCCTTCNGCCTGTTANACCCGNAGCCGACGGNAGCAGGTTCAACNAGTGTACGNNAATCACCATNNNCANCNCACNTTCCATTTTCTAACGCCAGATAGGCATNACGNACTNCCGGNTGTNCAGTGTGACNGG] consensusID : consensus_6962#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 786 fasta sequence [GAGCATGCAGCCGGAGGACGTCGGTTTGATACTGCTGTAAGGGACCGAAAAGGGGCGGCGTGGTTGGGGGAATGGGAAGGCGTGGAAAAGGTTGAACCTTTTCTCTCTTTTCTTTACTTTCCCGTATGCTGTATGATTTGCGAA--AATGGACCCCGGATTGGTACGATGGAGCAACCAAAGCATTCGAAGCGTTTTGTTTTTTCACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAGGGCTGCGGTAGTGGTGGTGGTGGTAGTGGAGTTAGTAGCTGTGGCGTTTGGAATGATGTGTATCCCTTTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTTCTTTCCCAACTGGGGTGTCCACCAAACAATGCGTTCTCATTTGGCAGTGGAATAATCGTAGCGTTCTGTTCGGAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCAAACAGTCAACGAAGCAGCATGACGAAAAAAACAAATCAGGGAACCCGCAATTTGCTTTACCATTGCTCGGTTACGTATATTTCTTTAGCAACGTATGCACGCTGCCTCTTTTCAAACACTATGCAATAATAATACGTACACGTTGAGGTGGAAAGGACATATCCGCTACTCTACTTGGTGTCGGCAGGGAATGGAAACAACCCCCAGAAGAGATGTTCCGTTTTTTATCTTAAGTTTTTTTTACCATTGCTTCCTTCGCTGTTACCGCAGCGACGGTAGCAGGTTCAAAAGTGTTTGTAATTTTCATTTTTTTTTT] [+] EMBL BX610944 [GAGCATGCAGCCGGAGGACGTCGGTTTGATACTGCTGTAAGGGACCGAAAAGGGGCGGCGTGGTTGGGGGAATGGGAAGGCGTGGAAAAGGTTGAACCTTTTCTCTCTTTTCTTTACTTTCCCGTATGCTGTATGATTTGCGAA AATGGACCCCGGATTGGTACGATGGAGCAACCAAAGCATTCGAAGCGTTTTGTTTTTTCACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAGGGCTGCGGTAGTGGTGGTGGTGGTAGTGGAGTTAGTAGCTGTGGCGTTTGGAATGATGTGTATCCCTTTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTTCTTTCCCAACTGGGGTGTCCACCAAACAATGCGTTCTCATTTGGCAGTGGAATAATCGTAGCGTTCTGTTCGGAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCAAACAGTCAACGAAGCAGCATGACGAAAAAAACAAATCAGGGAACCCGCAATTTGCTTTACCATTGCTCGGTTACGTATATTTCTTTAGCAACGTATGCACGCTGCCTCTTTTCAAACACTATGCAATAAT ] [+] EMBL BX615688 [ GGTTTGATACTGCTGTAAGGGACCGAATAGGGGCGGCGTGGTTGGGGGAATGGGAAGGCGTGGAAAAGGTTGAACCTTTTCTCTCTTTTCTTTACTTTCCCGTATGCTGTATGATTTGCGAA AATGGACCCCGGATTGGTACGATGGAGCAACCAAAGCATTCGAAGCGTTTTGTTTTTTCACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAGGGCTGCGGTAGTGGTGGTGGTGGTAGTGGAGTTAGTAGCTGTGGCGTTTGGAATGATGTGTATCCCTTTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTTCTTTCCCAACTGGGGTGTCCACCAAACAATGCGTTCTCATTTGGCAGTGGAATAATCGTAGCGTTCTGTTCGGAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCAAACAGTCAACGAAGCAGCATGACGAAAAAAACAAATCAGGGAACCCGCAATTTGCTTTACCATTGCTCGGTTACGTATATTTCTTTAGCAACGTATGCACGCTGCCTCTTTTCAAACACTATGCAATAATAATACGTACACGTTGAGGTGGAAAGGACATATCCGCTACTCTACTTGGTGTCGGCAGGGAATGGAAACAACCCCCAGAAGAGATGTTCCGTTTTTTATCTTAAGTTTTTTTTACCATTGCTTCCTTCGCTGTTACCGCAGCGACGGTAGCAGGTTCAAAAGTGTTTGTAATTTTCATTTTTTTTTT] [+] EMBL BX621398 [ GGAAAAGGTTGAACCTTTTCTCTCTTTTCTTTACTTTCCCGTATGCTGTATGATTTGCGAAANAATGGACCCCGGATTGGTACGATGGAGCAACCAAAGCATTCGAAGCGTTTTGTTTTTTCACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAGGGCTGCGGTAGTGGTGGTGGTGGTAGTGGAGTTAGTAGCTGTGGCGTTTGGAATGATGTGTATCCCTTTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTTCTTTCCCAACTGGGGTGTCCACCAAACAATGCGTTCTCATTTGGCAGTGGAATAATCGTAGCGTTCTGTTCGGAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCNAACAGTCAACGAAGCAGCATGACGAAAAAAACAAt ] [-] EMBL AGA282720 [ TAATACGTACACGTTGAGGTGGAAAGGACATATCCGCTACTCTACTTGGTGTCGGCAGGGAATGGAAACAACCCCCAGAAGAGATGTTCCGTTTTTTATCTTAAGTTTTTTTTACCATTGCTTCCTTCGCTGTTACCGCAGCGACGGTAGCAGGTTCAAAAGTGTTTGTAATTTTCATTT ] consensusID : consensus_6962#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence [TCCCCGAGGTTATTTGATACTGCTGTAAGGGACCGAAAAGGGGCGGCGTGGTTGGGGGAATGGGAAGGCGTGGAAAAGGTTGAANCTTCTTCTCTCTTTTCTTTACTTTCCCGTATGCTGTATGATTTGCGAAAATGGACCCCGGATTGGTACGATGGTAGCAAAGCAAGAGCATTCGAAGCGTCTAGTCNTTAACACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAATGGCTGCGGTAGTGGCTGGTGGTGGTAGTGGNGTTAGTACGCTGTGGCGTTTGGAATGATGTGTATCCCTTTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTTCTTTCCCAACTGGGGTGTCCACCAAACAATGCGTTCTCATTTGGCAGTGGAATAATCGTAGCGTTCTGTTCGGAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCAACAGTCAACGAAGCAGCATGACGAAAAAAACAAA] [+] EMBL AL932834 [TCCCCGAGGTTATTTGATACTGCTGTAAGGGACCGAAAAGGGGCGGCGTGGTTGGGGGAATGGGAAGGCGTGGAAAAGGTTGAANCTTCTTCTCTCTTTTCTTTACTTTCCCGTATGCTGTATGATTTGCGAAAATGGACCCCGGATTGGTACGATGGTAGCAAAGCAAGAGCATTCGAAGCGTCTAGTCNTTAACACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAATGGCTGCGGTAGTGGCTGGTGGTGGTAGTGGNGTTAGTACGCTGTGGCGTTTGGAATGATGTGTATCCCTTTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTTCTTTCCCAACTGGGGTGTCCACCAAACAATGCGTTCTCATTTGGCAGTGGAATAATCGTAGCGTTCTGTTCGGAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCAACAGTCAACGAAGCAGCATGACGAAAAAAACAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6962#1 GAGCATGCAGCCGGAGGACGTCGGTTTGATACTGCTGTAAGGGACCGAAAAGGGGCGGCG 60 consensus_6962#2 --------TCCCCGAGGTTAT----TTGATACTGCTGTAAGGGACCGAAAAGGGGCGGCG 48 consensus_6962#0 ------------------------------------------------------------ consensus_6962#1 TGGTTGGGGGAATGGGAA-GGCGTGGAAAAGGTTGAACCTT-TTCTCTCTTTTCTTTACT 118 consensus_6962#2 TGGTTGGGGGAATGGGAA-GGCGTGGAAAAGGTTGAANCTTCTTCTCTCTTTTCTTTACT 107 consensus_6962#0 -----GAATCCCCGNGGTTAGCGTGGAAAAGGTTGAACCTT-TTCTCTCTTTTCTTTACT 54 * * * ***************** *** ****************** consensus_6962#1 TTCCCGTATGCTGTATGATTTGCGAAAATGGACCCCGGAT-TGGTACGATGG-AGCAA-- 174 consensus_6962#2 TTCCCGTATGCTGTATGATTTGCGAAAATGGACCCCGGAT-TGGTACGATGGTAGCAAAG 166 consensus_6962#0 TTCCCGTATGCTGTATGATTTGCGAAAATGGACCCCGGATATGGTACGATGG-AGCAA-- 111 **************************************** *********** ***** consensus_6962#1 CCAAAGCATTCGAAGCGTTTTGTTTTTT-CACCCGAGCGCTTACCGGATTATTGGGGGAA 233 consensus_6962#2 CAAGAGCATTCGAAGCGTCTAGTCNTTAACACCCGAGCGCTTACCGGATTATTGGGGGAA 226 consensus_6962#0 CCAAAGCATTCGAAGCGTTTTGTTTTTT-CACCCGAGCGCTTACCGGATTATTGGGGGAA 170 * * ************** * ** ** ******************************* consensus_6962#1 TAGTACTAG-GGCTGCGGTAGTGG-TGGTGGTGGTAGTGGAGTTAGTA-GCTGTGGCGTT 290 consensus_6962#2 TAGTACTAATGGCTGCGGTAGTGGCTGGTGGTGGTAGTGGNGTTAGTACGCTGTGGCGTT 286 consensus_6962#0 TAGTACTAG-GGCTGCGGTAGTGG-TGGTGGTGGTAGTGGAGTTAGTA-GCTGTGGCGTT 227 ******** ************** *************** ******* *********** consensus_6962#1 TGGAATGATGTGTATCCCTTT-GTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGT 349 consensus_6962#2 TGGAATGATGTGTATCCCTTT-GTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGT 345 consensus_6962#0 TGGAATGATGTGTATCCCTTNTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGT 287 ******************** ************************************** consensus_6962#1 CAGCCTCCATT-TCTTT-CCCAACTGGGGTGTCCACCAAACAATGCGT---TCTCATTTG 404 consensus_6962#2 CAGCCTCCATT-TCTTT-CCCAACTGGGGTGTCCACCAAACAATGCGT---TCTCATTTG 400 consensus_6962#0 CAGCCTCCATTATCTTTACCCAACTGGGGTGTCCACCAAACAATGCGTATCTCATATATG 347 *********** ***** ****************************** ** ** ** consensus_6962#1 GCAGTGG-AATAATCGTAGCGTTCTGTTCGG-AGTGCACGAGTCCTTTGCTAACGCTTAG 462 consensus_6962#2 GCAGTGG-AATAATCGTAGCGTTCTGTTCGG-AGTGCACGAGTCCTTTGCTAACGCTTAG 458 consensus_6962#0 GCAGTGGCAATAATCGTAGCGTTCTGTTCGGCAGTGCACGAGTCCTTTGCTAACGCTTAG 407 ******* *********************** **************************** consensus_6962#1 CCGATTCAAACAGTCAACGAAGCAGCATGACGAAAAAAA-CAAATCAGGGAACCCGCAAT 521 consensus_6962#2 CCGATTCAA-CAGTCAACGAAGCAGCATGACGAAAAAAA-CAAA---------------- 500 consensus_6962#0 CCGATTCAAACAGTCAACGAAGCAGCATGACGAANANAAACAAATCAGGGAACCCGCAAT 467 ********* ************************ * ** **** consensus_6962#1 TTGCTTTACCATTGCTCGGTTACGTATATTTCTTTA--GCAACGTATGCACGCTGCCTCT 579 consensus_6962#2 ------------------------------------------------------------ consensus_6962#0 TTGCTTTACCATTGCTCGGTTACGTATATTTACTTATAGCAACGTATGCACGCTGCCTCT 527 consensus_6962#1 TTTCAAACACTATGCAATAATAATACGTACACGTTGAGGTGGAA-AGGACATATCCGCTA 638 consensus_6962#2 ------------------------------------------------------------ consensus_6962#0 TTTCAAACACTATGCNATACTAATACGTACACGTNGAGGTGGAACAGGACATATCCGCTA 587 consensus_6962#1 CTCTACTTGGTGTCGGCAGGGAATGGAAACAACCCCCAGAAGAGATGTTCCGTTTTTTAT 698 consensus_6962#2 ------------------------------------------------------------ consensus_6962#0 CTCTACTTGGTGTCGGCAGGGAATGGAAACAAACCCCAGAGNAGATGTTCNCGTGATCNT 647 consensus_6962#1 ---CTTAAGTTTTTTTTACCATTGCTTCCTTCG--CTGTTACCGCAGC----GACGGTAG 749 consensus_6962#2 ------------------------------------------------------------ consensus_6962#0 ATACTTAAGTCTACACCCATATGCTTTCCTTCNGCCTGTTANACCCGNAGCCGACGGNAG 707 consensus_6962#1 CAGGTTCAA-AAGTGTTTGTAATTTTCATTTTTTTTTT---------------------- 786 consensus_6962#2 ------------------------------------------------------------ consensus_6962#0 CAGGTTCAACNAGTGTACGNNAATCACCATNNNCANCNCACNTTCCATTTTCTAACGCCA 767 consensus_6962#1 --------------------------------------- consensus_6962#2 --------------------------------------- consensus_6962#0 GATAGGCATNACGNACTNCCGGNTGTNCAGTGTGACNGG 806 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||