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Anopheles gambiae
cluster # 6962 cluster # 6962       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6962#0 length = 806 sequences # 1  
consensus_6962#1 length = 786 sequences # 4  
consensus_6962#2 length = 500 sequences # 1  

consensusID : consensus_6962#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 806
fasta sequence
                              [GAATCCCCGNGGTTAGCGTGGAAAAGGTTGAACCTTTTCTCTCTTTTCTTTACTTTCCCGTATGCTGTATGATTTGCGAAAATGGACCCCGGATATGGTACGATGGAGCAACCAAAGCATTCGAAGCGTTTTGTTTTTTCACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAGGGCTGCGGTAGTGGTGGTGGTGGTAGTGGAGTTAGTAGCTGTGGCGTTTGGAATGATGTGTATCCCTTNTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTATCTTTACCCAACTGGGGTGTCCACCAAACAATGCGTATCTCATATATGGCAGTGGCAATAATCGTAGCGTTCTGTTCGGCAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCAAACAGTCAACGAAGCAGCATGACGAANANAAACAAATCAGGGAACCCGCAATTTGCTTTACCATTGCTCGGTTACGTATATTTACTTATAGCAACGTATGCACGCTGCCTCTTTTCAAACACTATGCNATACTAATACGTACACGTNGAGGTGGAACAGGACATATCCGCTACTCTACTTGGTGTCGGCAGGGAATGGAAACAAACCCCAGAGNAGATGTTCNCGTGATCNTATACTTAAGTCTACACCCATATGCTTTCCTTCNGCCTGTTANACCCGNAGCCGACGGNAGCAGGTTCAACNAGTGTACGNNAATCACCATNNNCANCNCACNTTCCATTTTCTAACGCCAGATAGGCATNACGNACTNCCGGNTGTNCAGTGTGACNGG]

[+] EMBL AL694983             [GAATCCCCGNGGTTAGCGTGGAAAAGGTTGAACCTTTTCTCTCTTTTCTTTACTTTCCCGTATGCTGTATGATTTGCGAAAATGGACCCCGGATATGGTACGATGGAGCAACCAAAGCATTCGAAGCGTTTTGTTTTTTCACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAGGGCTGCGGTAGTGGTGGTGGTGGTAGTGGAGTTAGTAGCTGTGGCGTTTGGAATGATGTGTATCCCTTNTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTATCTTTACCCAACTGGGGTGTCCACCAAACAATGCGTATCTCATATATGGCAGTGGCAATAATCGTAGCGTTCTGTTCGGCAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCAAACAGTCAACGAAGCAGCATGACGAANANAAACAAATCAGGGAACCCGCAATTTGCTTTACCATTGCTCGGTTACGTATATTTACTTATAGCAACGTATGCACGCTGCCTCTTTTCAAACACTATGCNATACTAATACGTACACGTNGAGGTGGAACAGGACATATCCGCTACTCTACTTGGTGTCGGCAGGGAATGGAAACAAACCCCAGAGNAGATGTTCNCGTGATCNTATACTTAAGTCTACACCCATATGCTTTCCTTCNGCCTGTTANACCCGNAGCCGACGGNAGCAGGTTCAACNAGTGTACGNNAATCACCATNNNCANCNCACNTTCCATTTTCTAACGCCAGATAGGCATNACGNACTNCCGGNTGTNCAGTGTGACNGG]


>consensus_6962#0 GAATCCCCGNGGTTAGCGTGGAAAAGGTTGAACCTTTTCTCTCTTTTCTTTACTTTCCCG TATGCTGTATGATTTGCGAAAATGGACCCCGGATATGGTACGATGGAGCAACCAAAGCAT TCGAAGCGTTTTGTTTTTTCACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAGG GCTGCGGTAGTGGTGGTGGTGGTAGTGGAGTTAGTAGCTGTGGCGTTTGGAATGATGTGT ATCCCTTNTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTAT CTTTACCCAACTGGGGTGTCCACCAAACAATGCGTATCTCATATATGGCAGTGGCAATAA TCGTAGCGTTCTGTTCGGCAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCAAACAG TCAACGAAGCAGCATGACGAANANAAACAAATCAGGGAACCCGCAATTTGCTTTACCATT GCTCGGTTACGTATATTTACTTATAGCAACGTATGCACGCTGCCTCTTTTCAAACACTAT GCNATACTAATACGTACACGTNGAGGTGGAACAGGACATATCCGCTACTCTACTTGGTGT CGGCAGGGAATGGAAACAAACCCCAGAGNAGATGTTCNCGTGATCNTATACTTAAGTCTA CACCCATATGCTTTCCTTCNGCCTGTTANACCCGNAGCCGACGGNAGCAGGTTCAACNAG TGTACGNNAATCACCATNNNCANCNCACNTTCCATTTTCTAACGCCAGATAGGCATNACG NACTNCCGGNTGTNCAGTGTGACNGG



consensusID : consensus_6962#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 786
fasta sequence
                              [GAGCATGCAGCCGGAGGACGTCGGTTTGATACTGCTGTAAGGGACCGAAAAGGGGCGGCGTGGTTGGGGGAATGGGAAGGCGTGGAAAAGGTTGAACCTTTTCTCTCTTTTCTTTACTTTCCCGTATGCTGTATGATTTGCGAA--AATGGACCCCGGATTGGTACGATGGAGCAACCAAAGCATTCGAAGCGTTTTGTTTTTTCACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAGGGCTGCGGTAGTGGTGGTGGTGGTAGTGGAGTTAGTAGCTGTGGCGTTTGGAATGATGTGTATCCCTTTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTTCTTTCCCAACTGGGGTGTCCACCAAACAATGCGTTCTCATTTGGCAGTGGAATAATCGTAGCGTTCTGTTCGGAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCAAACAGTCAACGAAGCAGCATGACGAAAAAAACAAATCAGGGAACCCGCAATTTGCTTTACCATTGCTCGGTTACGTATATTTCTTTAGCAACGTATGCACGCTGCCTCTTTTCAAACACTATGCAATAATAATACGTACACGTTGAGGTGGAAAGGACATATCCGCTACTCTACTTGGTGTCGGCAGGGAATGGAAACAACCCCCAGAAGAGATGTTCCGTTTTTTATCTTAAGTTTTTTTTACCATTGCTTCCTTCGCTGTTACCGCAGCGACGGTAGCAGGTTCAAAAGTGTTTGTAATTTTCATTTTTTTTTT]

[+] EMBL BX610944             [GAGCATGCAGCCGGAGGACGTCGGTTTGATACTGCTGTAAGGGACCGAAAAGGGGCGGCGTGGTTGGGGGAATGGGAAGGCGTGGAAAAGGTTGAACCTTTTCTCTCTTTTCTTTACTTTCCCGTATGCTGTATGATTTGCGAA  AATGGACCCCGGATTGGTACGATGGAGCAACCAAAGCATTCGAAGCGTTTTGTTTTTTCACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAGGGCTGCGGTAGTGGTGGTGGTGGTAGTGGAGTTAGTAGCTGTGGCGTTTGGAATGATGTGTATCCCTTTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTTCTTTCCCAACTGGGGTGTCCACCAAACAATGCGTTCTCATTTGGCAGTGGAATAATCGTAGCGTTCTGTTCGGAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCAAACAGTCAACGAAGCAGCATGACGAAAAAAACAAATCAGGGAACCCGCAATTTGCTTTACCATTGCTCGGTTACGTATATTTCTTTAGCAACGTATGCACGCTGCCTCTTTTCAAACACTATGCAATAAT                                                                                                                                                                                          ]
[+] EMBL BX615688             [                      GGTTTGATACTGCTGTAAGGGACCGAATAGGGGCGGCGTGGTTGGGGGAATGGGAAGGCGTGGAAAAGGTTGAACCTTTTCTCTCTTTTCTTTACTTTCCCGTATGCTGTATGATTTGCGAA  AATGGACCCCGGATTGGTACGATGGAGCAACCAAAGCATTCGAAGCGTTTTGTTTTTTCACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAGGGCTGCGGTAGTGGTGGTGGTGGTAGTGGAGTTAGTAGCTGTGGCGTTTGGAATGATGTGTATCCCTTTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTTCTTTCCCAACTGGGGTGTCCACCAAACAATGCGTTCTCATTTGGCAGTGGAATAATCGTAGCGTTCTGTTCGGAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCAAACAGTCAACGAAGCAGCATGACGAAAAAAACAAATCAGGGAACCCGCAATTTGCTTTACCATTGCTCGGTTACGTATATTTCTTTAGCAACGTATGCACGCTGCCTCTTTTCAAACACTATGCAATAATAATACGTACACGTTGAGGTGGAAAGGACATATCCGCTACTCTACTTGGTGTCGGCAGGGAATGGAAACAACCCCCAGAAGAGATGTTCCGTTTTTTATCTTAAGTTTTTTTTACCATTGCTTCCTTCGCTGTTACCGCAGCGACGGTAGCAGGTTCAAAAGTGTTTGTAATTTTCATTTTTTTTTT]
[+] EMBL BX621398             [                                                                                   GGAAAAGGTTGAACCTTTTCTCTCTTTTCTTTACTTTCCCGTATGCTGTATGATTTGCGAAANAATGGACCCCGGATTGGTACGATGGAGCAACCAAAGCATTCGAAGCGTTTTGTTTTTTCACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAGGGCTGCGGTAGTGGTGGTGGTGGTAGTGGAGTTAGTAGCTGTGGCGTTTGGAATGATGTGTATCCCTTTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTTCTTTCCCAACTGGGGTGTCCACCAAACAATGCGTTCTCATTTGGCAGTGGAATAATCGTAGCGTTCTGTTCGGAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCNAACAGTCAACGAAGCAGCATGACGAAAAAAACAAt                                                                                                                                                                                                                                                                                         ]
[-] EMBL AGA282720            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TAATACGTACACGTTGAGGTGGAAAGGACATATCCGCTACTCTACTTGGTGTCGGCAGGGAATGGAAACAACCCCCAGAAGAGATGTTCCGTTTTTTATCTTAAGTTTTTTTTACCATTGCTTCCTTCGCTGTTACCGCAGCGACGGTAGCAGGTTCAAAAGTGTTTGTAATTTTCATTT       ]


>consensus_6962#1 GAGCATGCAGCCGGAGGACGTCGGTTTGATACTGCTGTAAGGGACCGAAAAGGGGCGGCG TGGTTGGGGGAATGGGAAGGCGTGGAAAAGGTTGAACCTTTTCTCTCTTTTCTTTACTTT CCCGTATGCTGTATGATTTGCGAAAATGGACCCCGGATTGGTACGATGGAGCAACCAAAG CATTCGAAGCGTTTTGTTTTTTCACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACT AGGGCTGCGGTAGTGGTGGTGGTGGTAGTGGAGTTAGTAGCTGTGGCGTTTGGAATGATG TGTATCCCTTTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATT TCTTTCCCAACTGGGGTGTCCACCAAACAATGCGTTCTCATTTGGCAGTGGAATAATCGT AGCGTTCTGTTCGGAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCAAACAGTCAAC GAAGCAGCATGACGAAAAAAACAAATCAGGGAACCCGCAATTTGCTTTACCATTGCTCGG TTACGTATATTTCTTTAGCAACGTATGCACGCTGCCTCTTTTCAAACACTATGCAATAAT AATACGTACACGTTGAGGTGGAAAGGACATATCCGCTACTCTACTTGGTGTCGGCAGGGA ATGGAAACAACCCCCAGAAGAGATGTTCCGTTTTTTATCTTAAGTTTTTTTTACCATTGC TTCCTTCGCTGTTACCGCAGCGACGGTAGCAGGTTCAAAAGTGTTTGTAATTTTCATTTT TTTTTT



consensusID : consensus_6962#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 500
fasta sequence
                              [TCCCCGAGGTTATTTGATACTGCTGTAAGGGACCGAAAAGGGGCGGCGTGGTTGGGGGAATGGGAAGGCGTGGAAAAGGTTGAANCTTCTTCTCTCTTTTCTTTACTTTCCCGTATGCTGTATGATTTGCGAAAATGGACCCCGGATTGGTACGATGGTAGCAAAGCAAGAGCATTCGAAGCGTCTAGTCNTTAACACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAATGGCTGCGGTAGTGGCTGGTGGTGGTAGTGGNGTTAGTACGCTGTGGCGTTTGGAATGATGTGTATCCCTTTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTTCTTTCCCAACTGGGGTGTCCACCAAACAATGCGTTCTCATTTGGCAGTGGAATAATCGTAGCGTTCTGTTCGGAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCAACAGTCAACGAAGCAGCATGACGAAAAAAACAAA]

[+] EMBL AL932834             [TCCCCGAGGTTATTTGATACTGCTGTAAGGGACCGAAAAGGGGCGGCGTGGTTGGGGGAATGGGAAGGCGTGGAAAAGGTTGAANCTTCTTCTCTCTTTTCTTTACTTTCCCGTATGCTGTATGATTTGCGAAAATGGACCCCGGATTGGTACGATGGTAGCAAAGCAAGAGCATTCGAAGCGTCTAGTCNTTAACACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAATGGCTGCGGTAGTGGCTGGTGGTGGTAGTGGNGTTAGTACGCTGTGGCGTTTGGAATGATGTGTATCCCTTTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTTCTTTCCCAACTGGGGTGTCCACCAAACAATGCGTTCTCATTTGGCAGTGGAATAATCGTAGCGTTCTGTTCGGAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCAACAGTCAACGAAGCAGCATGACGAAAAAAACAAA]


>consensus_6962#2 TCCCCGAGGTTATTTGATACTGCTGTAAGGGACCGAAAAGGGGCGGCGTGGTTGGGGGAA TGGGAAGGCGTGGAAAAGGTTGAANCTTCTTCTCTCTTTTCTTTACTTTCCCGTATGCTG TATGATTTGCGAAAATGGACCCCGGATTGGTACGATGGTAGCAAAGCAAGAGCATTCGAA GCGTCTAGTCNTTAACACCCGAGCGCTTACCGGATTATTGGGGGAATAGTACTAATGGCT GCGGTAGTGGCTGGTGGTGGTAGTGGNGTTAGTACGCTGTGGCGTTTGGAATGATGTGTA TCCCTTTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGTCAGCCTCCATTTCTT TCCCAACTGGGGTGTCCACCAAACAATGCGTTCTCATTTGGCAGTGGAATAATCGTAGCG TTCTGTTCGGAGTGCACGAGTCCTTTGCTAACGCTTAGCCGATTCAACAGTCAACGAAGC AGCATGACGAAAAAAACAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6962#1      GAGCATGCAGCCGGAGGACGTCGGTTTGATACTGCTGTAAGGGACCGAAAAGGGGCGGCG 60
consensus_6962#2      --------TCCCCGAGGTTAT----TTGATACTGCTGTAAGGGACCGAAAAGGGGCGGCG 48
consensus_6962#0      ------------------------------------------------------------
                                                                                  

consensus_6962#1      TGGTTGGGGGAATGGGAA-GGCGTGGAAAAGGTTGAACCTT-TTCTCTCTTTTCTTTACT 118
consensus_6962#2      TGGTTGGGGGAATGGGAA-GGCGTGGAAAAGGTTGAANCTTCTTCTCTCTTTTCTTTACT 107
consensus_6962#0      -----GAATCCCCGNGGTTAGCGTGGAAAAGGTTGAACCTT-TTCTCTCTTTTCTTTACT 54
                           *       * *    ***************** *** ******************

consensus_6962#1      TTCCCGTATGCTGTATGATTTGCGAAAATGGACCCCGGAT-TGGTACGATGG-AGCAA-- 174
consensus_6962#2      TTCCCGTATGCTGTATGATTTGCGAAAATGGACCCCGGAT-TGGTACGATGGTAGCAAAG 166
consensus_6962#0      TTCCCGTATGCTGTATGATTTGCGAAAATGGACCCCGGATATGGTACGATGG-AGCAA-- 111
                      **************************************** *********** *****  

consensus_6962#1      CCAAAGCATTCGAAGCGTTTTGTTTTTT-CACCCGAGCGCTTACCGGATTATTGGGGGAA 233
consensus_6962#2      CAAGAGCATTCGAAGCGTCTAGTCNTTAACACCCGAGCGCTTACCGGATTATTGGGGGAA 226
consensus_6962#0      CCAAAGCATTCGAAGCGTTTTGTTTTTT-CACCCGAGCGCTTACCGGATTATTGGGGGAA 170
                      * * ************** * **  **  *******************************

consensus_6962#1      TAGTACTAG-GGCTGCGGTAGTGG-TGGTGGTGGTAGTGGAGTTAGTA-GCTGTGGCGTT 290
consensus_6962#2      TAGTACTAATGGCTGCGGTAGTGGCTGGTGGTGGTAGTGGNGTTAGTACGCTGTGGCGTT 286
consensus_6962#0      TAGTACTAG-GGCTGCGGTAGTGG-TGGTGGTGGTAGTGGAGTTAGTA-GCTGTGGCGTT 227
                      ********  ************** *************** ******* ***********

consensus_6962#1      TGGAATGATGTGTATCCCTTT-GTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGT 349
consensus_6962#2      TGGAATGATGTGTATCCCTTT-GTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGT 345
consensus_6962#0      TGGAATGATGTGTATCCCTTNTGTTGTCAGCATGCATCACCGTAAAGCTTCGTCTTTTGT 287
                      ********************  **************************************

consensus_6962#1      CAGCCTCCATT-TCTTT-CCCAACTGGGGTGTCCACCAAACAATGCGT---TCTCATTTG 404
consensus_6962#2      CAGCCTCCATT-TCTTT-CCCAACTGGGGTGTCCACCAAACAATGCGT---TCTCATTTG 400
consensus_6962#0      CAGCCTCCATTATCTTTACCCAACTGGGGTGTCCACCAAACAATGCGTATCTCATATATG 347
                      *********** ***** ******************************   **  ** **

consensus_6962#1      GCAGTGG-AATAATCGTAGCGTTCTGTTCGG-AGTGCACGAGTCCTTTGCTAACGCTTAG 462
consensus_6962#2      GCAGTGG-AATAATCGTAGCGTTCTGTTCGG-AGTGCACGAGTCCTTTGCTAACGCTTAG 458
consensus_6962#0      GCAGTGGCAATAATCGTAGCGTTCTGTTCGGCAGTGCACGAGTCCTTTGCTAACGCTTAG 407
                      ******* *********************** ****************************

consensus_6962#1      CCGATTCAAACAGTCAACGAAGCAGCATGACGAAAAAAA-CAAATCAGGGAACCCGCAAT 521
consensus_6962#2      CCGATTCAA-CAGTCAACGAAGCAGCATGACGAAAAAAA-CAAA---------------- 500
consensus_6962#0      CCGATTCAAACAGTCAACGAAGCAGCATGACGAANANAAACAAATCAGGGAACCCGCAAT 467
                      ********* ************************ * ** ****                

consensus_6962#1      TTGCTTTACCATTGCTCGGTTACGTATATTTCTTTA--GCAACGTATGCACGCTGCCTCT 579
consensus_6962#2      ------------------------------------------------------------
consensus_6962#0      TTGCTTTACCATTGCTCGGTTACGTATATTTACTTATAGCAACGTATGCACGCTGCCTCT 527
                                                                                  

consensus_6962#1      TTTCAAACACTATGCAATAATAATACGTACACGTTGAGGTGGAA-AGGACATATCCGCTA 638
consensus_6962#2      ------------------------------------------------------------
consensus_6962#0      TTTCAAACACTATGCNATACTAATACGTACACGTNGAGGTGGAACAGGACATATCCGCTA 587
                                                                                  

consensus_6962#1      CTCTACTTGGTGTCGGCAGGGAATGGAAACAACCCCCAGAAGAGATGTTCCGTTTTTTAT 698
consensus_6962#2      ------------------------------------------------------------
consensus_6962#0      CTCTACTTGGTGTCGGCAGGGAATGGAAACAAACCCCAGAGNAGATGTTCNCGTGATCNT 647
                                                                                  

consensus_6962#1      ---CTTAAGTTTTTTTTACCATTGCTTCCTTCG--CTGTTACCGCAGC----GACGGTAG 749
consensus_6962#2      ------------------------------------------------------------
consensus_6962#0      ATACTTAAGTCTACACCCATATGCTTTCCTTCNGCCTGTTANACCCGNAGCCGACGGNAG 707
                                                                                  

consensus_6962#1      CAGGTTCAA-AAGTGTTTGTAATTTTCATTTTTTTTTT---------------------- 786
consensus_6962#2      ------------------------------------------------------------
consensus_6962#0      CAGGTTCAACNAGTGTACGNNAATCACCATNNNCANCNCACNTTCCATTTTCTAACGCCA 767
                                                                                  

consensus_6962#1      ---------------------------------------
consensus_6962#2      ---------------------------------------
consensus_6962#0      GATAGGCATNACGNACTNCCGGNTGTNCAGTGTGACNGG 806
                                                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)