These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6969#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1324 fasta sequence [CCGAGAACAACGACATTTGCCGCGTTTCGGTCGAGCGTGTGAAAAAAAGCGAATTTGGCCAACATTTTCCGCCCGCCAGCTTCCGATTAACCTTTACCGCACAAGAAAACACTCTGACCATCGGTTTGCCGCCCGGAAGTAGCCCATCAGCAGACATCTTGTAGCGAAAATCGGCCCCTCCGATTTCGGTCTGCGCTTGAGGGG-TTTTTTCGGCGAGGGAAGCGGTAGCGTCGTCGGCCCGCGGTGATACCAGATTATTGGTCGCTTGGCTCTGCAAAGTATGTAAACAGTGCTGTTTGCTGACTATTCTCTTGCCATCCAATTCTCCATACCCGCACCACAACGTACAATACACGCGCGCCCCGGTCCGTACGGACACCATCGCACCGTGCCGTCAACGAGCAGTCAAAGATGTCTCGCTACCCGCACGACGCCAAGGTTTACGTCGGTGAGTTAGGTAACAATGCCAGCAAGCAGGACATCGAGGAAGCGTTCGGGTACTACGGGCCGCTGCGCAACGTGTGGGTCGCCCGCAACCCGCCCGGCTTTGCGTTCGTCGAGTTCGAGGATGCGCGCGACGCGGAGGATGCGGTGCGCGGGCTGGACGGCCGCACCATTTCCGGCCGCCGGGCCCGGGTAGAGCTATCGACGGGACGGGGCGGACGCGGTGGCGGTGGTGGTCGTGGTGGGCCACCGCGCGGCGGCGGCAAGGGTGGCC-GGTTCCAGTCCGACGACCGCTGCTACGAGTGTGGCGGCCGGGGCCACTTTGCACGCGATTGCGCACGTTCCGGGCGCAGGGGACGCAAAAGATCGCGCAGCCCCCGGTCGCGATCGCGCGAGCTGCGTACGCGTTCGCGTANCTACAGCCGTTCCCGCAGCCGCTCCCGGGATCGTCGTTCGCGGTCGAANGCAACGCCGAAGCGGGGCGCTGCCGCCAACAATCGCTCGCTGAGCCGCGACGTGAGCAAAACNCCCCGGCGCAACGTGTCGCGCA-NCCGTCCCGCAGCAAGTCCCGCTCGATCAGGCGTTCGCTGTCGCGCTCACAGTCCCGGTCGGTGTCACGATCGCGCTCCCGCCACCGCAACGGAGATCACTAGATGATGATGATGACGACGACGACGCGGAAGACGTGTGCTGTAGGACGCTAAGGACTTTAACAACAGAGAAAACCAACAAACAAACAAACAAAATAACATCAACAGGGTGTAGGAGAGGTGATCCTTTTTTGCCTCTGGACGGCTGCTAGCACGAGCGGGGAAAAAGAGATAAGGAAAGATAAACAGGGAAATAGTAGTGGGGAGGCAGAGAATCCGTATCCTTCATA] [+] EMBL BM617106 [CCGAGAACAACGACATTTGCCGCGTTTCGGTCGAGCGTGTGAAAAAAAGCGAATTTGGCCAACATTTTCCGCCCGCCAGCTTCCGATTAACCTTTACCGCACAAGAAAACACTCTGACCATCGGTTTGCCGCCCGGAAGTAGCCCATCAGCAGACATCTTGTAGCGAAAATCGGCCCCTCCGATTTCGGTCTGCGCTTGAGGGGTTTTTTTCGGCGAGGGAAGCGGTAGCGTCGTCGGCCCGCGGTGATACCAGATTATTGGTCGCTTGGCTCAGCAAAGTATGTAAACAGTGCTGTTTGCTGACTATTCTCTTGCCATCCAATTCTCCATACCCGCACCACAACGTACAATACACGCGCGCCCCGGTCCGTACGGACACCATCGCACCGTGCCGTCAACGAGCAGTCAAAGATGTCTCGCTACCCGCACGACGCCAAGGTTTACGTCGGTGAGTTAGGTAACAATGCCAGCAAGCAGGACATCGAGGAAGCGTTCGGGTACTACGGGCCGCTGCGCAACGTGTGGGTCGCCCGCAACCCGCCCGGCTTTGCGTTCGTCGAGTTCGAGGATGC ] [+] EMBL BX621938 [ CCGCGTTTCGGTCGAGCGTGTAAAAAAAAGCGAATTTGGCCAACATTTTCCGCCCGCCAGCTTCCGACTAACCTTTACCGCACAAGAAAACACTCTGACCATCGGTTTGCCGCCCGGAAGTTGCCCATCAGCAGACATCTTGTAGCGAAAATCGGCCCCTCCGATTTCGGTCTGCGCTTGAGGGG GTTTTTCGGCGAGGGAAGCGGTAGCGTCGTCGGCCCGCGGTGATACCAGATTATTGGTCGCTTGGCTCTGCAAAGTATGTAAACAGTGCTGTTTGCTGACTATTCTCTTGCCATCCAATTCTCCATACCCGCACCACAACGTACAATACACGCGCGCCCCGGTCCGTACGGACACCATCGCACCGTGCCGTCAACGAGCAGTCAAAGATGTCTCGCTACCCGCACGACGCCAAGGTTTACGTCGGTGAGTTAGGTAACAATGCCAGCAAGCAGGACATCGAGGAAGCGTTCGGGTACTACGGGCCGCTGCGCAACGTGTGGGTCGCCCGCAACCCGCCCGGCTTTGCGTTCGTCGAGTTCGAGGATGCGCGCGACGCGGAGGATGCGGTGCGCGGGCTGGACGGCCGCACCATTTCCGGCCGCCGGGCCCGGGTAGAGCTATCGACGGGACGGGGCGGACGCGGTGGCGGTGGTGGTCGTGGTGGGCCACCGCGCGGCGGCGGCAAGGGTGGCCGGGTTCCAGTCCGACGACCGCTGCTACNAATGTGGCGGCCGGGGCCACTTTGCt ] [+] EMBL BX622752 [ TTGGCTCTGCAAAGTATGTAAACAGTGCTGTTTGCTGACTATTCTCTTGCCATCCAATTCTCCATACCCGCACCACAACGTACAATACACGCGCGCCCCGGTCCGTACGGACACCATCGCACCGTGCCGTCAACGAGCAGTCAAAGATGTCTCGCTACCCGCACGACGCCAAGGTTTACGTCGGTGAGTTAGGTAACAATGCCAGCAAGCAGGACATCGAGGAAGCGTTCGGGTACTACGGGCCGCTGCGCAACGTGTGGGTCGCCCGCAACCCGCCCGGCTTTGCGTTCGTCGAGTTCGAGGATGCGCGCGACGCGGAGGATGCGGTGCGCGGGCTGGACGGCCGCACCATTTCCGGCCGCCGGGCCCGGGTAGAGCTTTCGACGGGACGGGGCGGCCGCGGTGGCGGTGGTGGTCGTGGTGGGCCACCGCGCGGCGGCGGCAAGGGTGGCC GGTTCCAGTCCGACGACCGCTGCTACGAGTGTGGCGGCCGGGGCCACTTTGCACGCGATTGCGCACGTTCCGGGCGCAGGGGACGCAAAAGATCGCGCAGCCCCCGGTCGCGATCGCGCGAGCTGCGTACGCGTTCGCGTANCTACAGCCGTTCCCGCAGCCGCTCCCGGGATCGTCGTTCGCGGTCGAANGCAACGCCGAAGCGGGGCGCTGCCGCCAACAATCGCTCGCTGAGCCGCGACGTGAGCAAAACNCCCCGGCGCAACGTGTCGCGCA NCCGTCCCGCAGCAAGT ] [+] EMBL BM583953 [ ccGCGGACGC GTGGGGGTGGTGGTCGTGGTGGGCCACCGCGCGGCGGCGGCAAGGGTGGCC GGTTCCAGTCCGACGACCGCTGCTACGAGTGTGGCGGCCGGGGCCACTTTGCACGCGATTGCGCACGTTCCGGGCGCAGGGGACGCAAAAGATCGCGCAGCCCCCGGTCGCGATCGCGCGAGCTGCGTACGCGTTCGCGCAGCTACAGCCGTTCCCGCAGCCGCTCCCGGGATCGTCGTTCGCGGTCGAAGGCAACGCCGAAGCGGGGCGCTGCCGCCAACAATCGCTCGCTGAGCCGCGACGTGAGCAAAACGCCCCGGCGCAACGTGTCGCGCAGCCCGTCGCGCAGCAAGTCCCGCTCGATCAGGCGTTCGCTGTCGCGCTCACAGTCCCGGTCGGTGTCACGATCGCGCTCCCGCCACCGCAACGGAGATCACTAGATGATGATGATGACGACGACGACGCGGAAGACGTGTGCTGTAGGACGCTAAGGACTTTAACAACAGAGAAAACCAACAAACAAACAAACAAAATAACATCAACAGGGTGTAGGAGAGGTGATCCTTTTTTGCCTCTGGACGGCTGCTAGCACGAGCGGGGAAAAAGAGATAAGGAAAGATAAACAGGGAAATAGTAGTGGGGAGGCAGAGAATCCGTATCCTTCATA] consensusID : consensus_6969#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 752 fasta sequence [NCTGCCCGCNNNCTACGANNGTNTGCCGCCCTGGGGCCACCTTTGCCACCCTCGATTGCGCACGTTTCCGGGNCCCAGGGGACGCNATCTAAGATCGCGCAGCCCCCGTGTCGCGATCGCGCGNAGCTGCGTACGCGTTCGCGTAGCTACAGCCGTTCCCGCAGTCCGCTCCTCGGGATCCGTCGCTCGCGGTCGAAGGCAACGCCGAAGCGGGGCGCTGCCGTCCTAACAATCGCTCGCCTGAGCCGCCGACGTGAGCNNAAACGNCCCCGGCGCAACGTATCGCGCAGCCCGTCGCGCAGCAAGTCTCGCTCGATCAGGCGTTCGCTGTCGCGCTCACAGTCCCGGTCGGTGTCACGATCGCGCTCCCGCCACCGCAACGGAGATCACTAGATGATGATGACGAGGACGAGGACGACATGTGCTGTAGGACGCTAAGGACTTTAACAACAGAGAAAACCAACAAACAAACATAACAAAATAACATCAACAGGTGTAGGGGGGTGATCCTTTTTTGCCTCTGGACGCTGCTAGCACGAGCGGGGAAAAAGAGATAAGGAAAGATAAACAGGGAAATAGTAGTGGGGAGGCAGAGCATCCGTATCCTTCATAACAACAAACGTCTAATCGTCTACCCGTGTGCAGCAGCAGCAGCGGTTGGGGTGGCGGTTGAGATGCGGACCAAATGTTTACATGATACTCACAAGGACGAAAGGACAGTAAAAAAAATCAAANACNAAGGCAGGCATGTG] [-] EMBL BX466712 [NCTGCCCGCNNNCTACGANNGTNTGCCGCCCTGGGGCCACCTTTGCCACCCTCGATTGCGCACGTTTCCGGGNCCCAGGGGACGCNATCTAAGATCGCGCAGCCCCCGTGTCGCGATCGCGCGNAGCTGCGTACGCGTTCGCGTAGCTACAGCCGTTCCCGCAGTCCGCTCCTCGGGATCCGTCGCTCGCGGTCGAAGGCAACGCCGAAGCGGGGCGCTGCCGTCCTAACAATCGCTCGCCTGAGCCGCCGACGTGAGCNNAAACGNCCCCGGCGCAACGTATCGCGCAGCCCGTCGCGCAGCAAGTCTCGCTCGATCAGGCGTTCGCTGTCGCGCTCACAGTCCCGGTCGGTGTCACGATCGCGCTCCCGCCACCGCAACGGAGATCACTAGATGATGATGACGAGGACGAGGACGACATGTGCTGTAGGACGCTAAGGACTTTAACAACAGAGAAAACCAACAAACAAACATAACAAAATAACATCAACAGGTGTAGGGGGGTGATCCTTTTTTGCCTCTGGACGCTGCTAGCACGAGCGGGGAAAAAGAGATAAGGAAAGATAAACAGGGAAATAGTAGTGGGGAGGCAGAGCATCCGTATCCTTCATAACAACAAACGTCTAATCGTCTACCCGTGTGCAGCAGCAGCAGCGGTTGGGGTGGCGGTTGAGATGCGGACCAAATGTTTACATGATACTCACAAGGACGAAAGGACAGTAAAAAAAATCAAANACNAAGGCAGGCATGTG] consensusID : consensus_6969#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence [CGAGGTTAAGCGTGTGAAAAAAAGCGAATTTGGCAACATTTTCCGCCCGCCAGCTTCCGATTAACCTTTACCTGCACAAGAAAACACTCTGACCATCGGTTTGCCGCCCGGAAGTAGCCCATCAGCAGACATCTTGTAGCGAAAATCTGGCCCCTCCGATTTCGGTCTGCGCTTGAGTGGGGTTNAANCTGGCGACGGGAAGCGGTAGCGTCGTCGGGGCCGCGGTGATACCAGATNTATTGGGTACGCTTGTGCTCTTGGAAGAGTATTGTACAAAGATGTACTCGGCTGACCCGGACGACGACCATAGGTTNACTGTCGGATGCACGCTTCAGCGTAACAAATGGCCAGACAAGCAGGACATCGGANGNGCAAAGCGGTTCGCGAGATTANCTTGACANGATGCACAGGCTAGACGCCTATAACCGGGTAGGTAGCGNGATTCTGGCCGGCCTANAAGCCCCAGACCCCAGGTGCTATTACGGCCGCTTTGCCGA] [+] EMBL AL697394 [CGAGGTTAAGCGTGTGAAAAAAAGCGAATTTGGCAACATTTTCCGCCCGCCAGCTTCCGATTAACCTTTACCTGCACAAGAAAACACTCTGACCATCGGTTTGCCGCCCGGAAGTAGCCCATCAGCAGACATCTTGTAGCGAAAATCTGGCCCCTCCGATTTCGGTCTGCGCTTGAGTGGGGTTNAANCTGGCGACGGGAAGCGGTAGCGTCGTCGGGGCCGCGGTGATACCAGATNTATTGGGTACGCTTGTGCTCTTGGAAGAGTATTGTACAAAGATGTACTCGGCTGACCCGGACGACGACCATAGGTTNACTGTCGGATGCACGCTTCAGCGTAACAAATGGCCAGACAAGCAGGACATCGGANGNGCAAAGCGGTTCGCGAGATTANCTTGACANGATGCACAGGCTAGACGCCTATAACCGGGTAGGTAGCGNGATTCTGGCCGGCCTANAAGCCCCAGACCCCAGGTGCTATTACGGCCGCTTTGCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6969#0 CCGAGAACAACGACATTTGCCGCGTTTCGGTCGAGCGTGTGAAAAAAAGCGAATTTGGCC 60 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 AACATTTTCCGCCCGCCAGCTTCCGATTAACCTTTACCGCACAAGAAAACACTCTGACCA 120 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 TCGGTTTGCCGCCCGGAAGTAGCCCATCAGCAGACATCTTGTAGCGAAAATCGGCCCCTC 180 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 CGATTTCGGTCTGCGCTTGAGGGGTTTTTTCGGCGAGGGAAGCGGTAGCGTCGTCGGCCC 240 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 GCGGTGATACCAGATTATTGGTCGCTTGGCTCTGCAAAGTATGTAAACAGTGCTGTTTGC 300 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 TGACTATTCTCTTGCCATCCAATTCTCCATACCCGCACCACAACGTACAATACACGCGCG 360 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 CCCCGGTCCGTACGGACACCATCGCACCGTGCCGTCAACGAGCAGTCAAAGATGTCTCGC 420 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 TACCCGCACGACGCCAAGGTTTACGTCGGTGAGTTAGGTAACAATGCCAGCAAGCAGGAC 480 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 ATCGAGGAAGCGTTCGGGTACTACGGGCCGCTGCGCAACGTGTGGGTCGCCCGCAACCCG 540 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 CCCGGCTTTGCGTTCGTCGAGTTCGAGGATGCGCGCGACGCGGAGGATGCGGTGCGCGGG 600 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 CTGGACGGCCGCACCATTTCCGGCCGCCGGGCCCGGGTAGAGCTATCGACGGGACGGGGC 660 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 GGACGCGGTGGCGGTGGTGGTCGTGGTGGGCCACCGCGCGGCGGCGGCAAGGGTGGCCGG 720 consensus_6969#1 ------------------------------------------------------------ consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 TTCCAGTCCGACGACCGCTGCTACGAGTGTGGCGGCC-GGGGCCACTTT----GCACGCG 775 consensus_6969#1 ------NCTGCCCGCNNNCTACGANNGTNTGCCGCCCTGGGGCCACCTTTGCCACCCTCG 54 consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 ATTGCGCACGTTCC--GGGCGCAGGGGACGCAA---AAGATCGCGCAGCCCCCG-GTCGC 829 consensus_6969#1 ATTGCGCACGTTTCCGGGNCCCAGGGGACGCNATCTAAGATCGCGCAGCCCCCGTGTCGC 114 consensus_6969#2 ---------------------------------------------------------CGA 3 ** consensus_6969#0 GATCGCGCGA-GCTGCGTACGCGTTCGCGTANCTACAGCCGTTCCCGCAG-CCGCTCC-C 886 consensus_6969#1 GATCGCGCGNAGCTGCGTACGCGTTCGCGTAGCTACAGCCGTTCCCGCAGTCCGCTCCTC 174 consensus_6969#2 GGTTAAGCGT--GTGAAAAAAAGCGAATTTGGCAACATT--TTCCGCCCGCCAGCTTCCG 59 * * *** ** * * * * *** **** * * * *** * consensus_6969#0 GGGATC-GTCGTTCGCGGTCGAANGCAACGCCGAAGCGGGGCGCTGCCGCC--AACAATC 943 consensus_6969#1 GGGATCCGTCGCTCGCGGTCGAAGGCAACGCCGAAGCGGGGCGCTGCCGTCCTAACAATC 234 consensus_6969#2 ATTAACCTTTACCTGCACAAGAAAACACT--CTGACCATCGGTTTGCCGCCC-GGAAGTA 116 * * * ** *** ** * * * * ***** * * * consensus_6969#0 GCTCGC-TGAGCCGC-GACGTG-AGCAAAACN--CCCCGGCGCAACGTGTCGCGCANCC- 997 consensus_6969#1 GCTCGCCTGAGCCGCCGACGTG-AGCNNAAACGNCCCCGGCGCAACGTATCGCGCAGCCC 293 consensus_6969#2 GCCCA--TCAGCAGACATCTTGTAGCGAAAATCTGGCCCCTCCGATTTCGGTCTGCGCTT 174 ** * * *** * * ** *** ** ** * * * * * consensus_6969#0 GTCCCGCAGCAAGTCCCGCTCGATCAGGCGTT--CGCTGTCGCGCTCACAGT----CCCG 1051 consensus_6969#1 GTCGCGCAGCAAGTCTCGCTCGATCAGGCGTT--CGCTGTCGCGCTCACAGT----CCCG 347 consensus_6969#2 GAGTGGGGTTNAANCTGGCGACGGGAAGCGGTAGCGTCGTCGGGGCCGCGGTGATACCAG 234 * * * * ** * *** * ** **** * * * ** ** * consensus_6969#0 GTCGGT--GTCACGATCGCGCTCCCGCCACCGCAACGGAGATCACTAGATGATGATGATG 1109 consensus_6969#1 GTCGGT--GTCACGATCGCGCTCCCGCCACCGCAACGGAGATCACTAGATGATGATGACG 405 consensus_6969#2 ATNTATTGGGTACGCTTGTGCTCTTGGAAGAGTATTGTACAAAGATGTACTCGGCTGACC 294 * * * *** * * **** * * * * * * * * * * *** consensus_6969#0 ACGACGACGACGCGGAAGACGTGTGCTGTAGGACGCTAAGGACTTTAACAACAGAGAAAA 1169 consensus_6969#1 AGGACGAGGAC------GACATGTGCTGTAGGACGCTAAGGACTTTAACAACAGAGAAAA 459 consensus_6969#2 CGGACGACGACC----ATAGGTTNACTGTCGGATGC---ACGCTT---CAGCGTAACAAA 344 ***** *** * * **** *** ** *** ** * * *** consensus_6969#0 CCAACAAACAAACA-AACAAAATAACATCAACAGGGTGTAGGAGAGGTGATCCTTTTTTG 1228 consensus_6969#1 CCAACAAACAAACATAACAAAATAACATCAACAGG-TGTAGG-GGGGTGATCCTTTTTTG 517 consensus_6969#2 TGGCCAGACAAGCAGGACATCGGANGNGCAAAGCG--GTTCGCGAGATTANC-----TTG 397 ** **** ** *** * *** * ** * * * * * * *** consensus_6969#0 CCTCTGGACGGCTGCTAGCACGAGCGGGGAAAAAGAGATAAGGAAAGATAAACAGGGAAA 1288 consensus_6969#1 CCTCTGGACG-CTGCTAGCACGAGCGGGGAAAAAGAGATAAGGAAAGATAAACAGGGAAA 576 consensus_6969#2 ACANGATGCACAGGCTAG-ACGCCTATAACCGGGTAGGTAGCGNGATTCTGGCCGGCCTA 456 * * ***** *** ** ** * * * ** * consensus_6969#0 TAGTAGTGGGGAGGCAGA-GAATCCGTATCCTTCATA----------------------- 1324 consensus_6969#1 TAGTAGTGGGGAGGCAGA-GCATCCGTATCCTTCATAACAACAAACGTCTAATCGTCTAC 635 consensus_6969#2 NAAGCCCCAGACCCCAGGTGCTATTACGGCCGCTTTGCCGA------------------- 497 * * *** * ** * consensus_6969#0 ------------------------------------------------------------ consensus_6969#1 CCGTGTGCAGCAGCAGCAGCGGTTGGGGTGGCGGTTGAGATGCGGACCAAATGTTTACAT 695 consensus_6969#2 ------------------------------------------------------------ consensus_6969#0 --------------------------------------------------------- consensus_6969#1 GATACTCACAAGGACGAAAGGACAGTAAAAAAAATCAAANACNAAGGCAGGCATGTG 752 consensus_6969#2 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||