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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6970#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 841 fasta sequence
[CCAGAATCCCCCGAGGTTGTCTCATCAATCGTATAGCAATCAAGGGCGTGACACTTGACGTATCGTAAAAGTACGTTAGTACATGTAAGCCTTGGCGTTATTTGCAGTCTCTCTAATCTCGAATGTAAGATAAGATTCCGTGAGGCTCTATTTTGTCATAAATCGATTGCGCTGGTTGACTCGACGCACTGAAACACTTTGTCGTTTTTGCCGCTAAGGTTGACTAAATGCAATACATCCGTGACAAAAATGGGGCAGCACATCTACAAATCTATCCTATGTCGAGACTTGAGCGGGAACTGCCCTAAACGGAATGCTTTGAAGTAGTAGTTGAATTGTGGAGCAAGGAGCAATCTGAGCCATAAAGTCTTATGGCAGTATGTTCGCATACCA-CCATTACTACTTTAATGCATTCGCGATGACTACAGGGGTTTGCAACGCAA-CCACGATCGGGAGCAAATTTTACGATTCG-TGTAGTG-TAATTCTAAGATTGCNGAACCTGATGCATGAAAACGTNGTCTATGCCCGGGACTGTGGCAACATGAATCCAATATTTTGGAACATGAGTCGNNTCCTTNTCAGGAGGTCAGTTGCCAATGCTAACATCATATATTCAACGCTACGCGANATGTNCTCTCANGCAGCACAGCTGCTATTGCAACTGCAAAACCATCTCGCGATCGCTGAACA-TTGCTCGTNAACATTNCCGTACANACCAGTGTAACAGATACTTACATATNATCGATCAATAGCAGTNACTNCTGNAANATCGAAACNTCGGTGTGACACAGTTGACTATCTACATCTTTATATGCACAACAGGGTTAAGAGACNAGGATAN]
[+] EMBL AL930320 [CCAGAATCCCCCGAGGTTGTCTCATCAATCGTATAGCAATCAAGGGCGTGACACTTGACGTATCGTAAAAGTACGTTAGTACATGTAAGCCTTGGCGTTATTTGCAGTCTCTCTAATCTCGAATGTAAGATAAGATTCCGTGAGGCTCTATTTTGTCATAAATCGATTGCGCTGGTTGACTCGACGCACTGAAACACTTTGTCGTTTTTGCCGCTAAGGTTGACTAAATGCAATACATCCGTGACAAAAATGGGGCAGCACATCTACAAATCTATCCTATGTCGAGACTTGAGCGGGAACTGCCCTAAACGGAATGCTTTGAAGTAGTAGTTGAATTGTGGAGCAAGGAGCAATCTGAGCCATAAAGTCTTATGGCAGTATGTTCGCATACCA CCATTACTACTTTAATGCATTCGCGATGACTACAGGGGTTTGCAACGCAA CCACGATCGGGAGCAAATTTTACGATTCG TGTAGTG TAATTCTAAGATTGCNGAACCTGATGCATGAAAACGTNGTCTATGCCCGGGACTGTGGCAACATGAATCCAATATTTTGGAACATGAGTCGNNTCCTTNTCAGGAGGTCAGTTGCCAATGCTAACATCATATATTCAACGCTACGCGANATGTNCTCTCANGCAGCACAGCTGCTATTGCAACTGCAAAACCATCTCGCGATCGCTGAACA TTGCTCGTNAACATTNCCGTACANACCAGTGTAACAGATACTTACATATNATCGATCAATAGCAGTNACTNCTGNAANATCGAAACNTCGGTGTGACACAGTTGACTATCTACATCTTTATATGCACAACAGGGTTAAGAGACNAGGATAN]
[+] EMBL BX610726 [ TACGTTAGTACATGTAAGCCTTGGCGTTATTTGCAGTCTCTCTAATCTCGAATGTAAGATAAGATTCCGTGAGGCTCTATTTTGTCATAAATCGATTGCGCTGGTTGACTCGACGCACTGAAACACTTTGTCG TTTTGCCGCTAAGGTTGACTAAA GCAATACATCCGTGACAAAAATGGGGCAGCACATC ACAAATCTATCCTATGTCGAGACTTGAGCGGGAACTGCCCTAAACGGAATGCTTTGAAGTAGT GTTGAATTGTGGAGCAAGGAGCAATCTGAGCCATAAAGTCTTATGGCAGTATGTTCGCATACCACCCATTACTACTTTAATGCATTCGCGATGACTACAGGGGTTTGCAACGCAACCCACGATCGGGAGCAAATTTTACGATTCGTTGT GTGTTAATTCTAAGATTGC GAACCTGATGCATGAAAACGTTGTCTATGCCCGGGACTGTGG AACATGAATCCAATATTTTGGAACATGAGTCGTTTCCTTTTC GGAGGTCAGTTGCCAATGCTAACATCAT TATTCAACGCT CGCGAGATGT TTTTCA GCAGCACAGCTGCTATTGC ACTGCAAAACCATCTCGCGATCGCTGAACATTTGCT GTTAACATT CCGTA A AACAGTGTAAAAGATACTTACATAT TTCGATCAAct ]
consensusID : consensus_6970#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 670 fasta sequence
[TCATCAATCGTGTAGCAATCAAGGGCGTGGCACTTGACGTATCGGTAAAGTACGTTACTACCTGAAGATGAGTTGCAAACCCATGTTAGCCATGACGCTATTTGCAGTCTCCCTAATCTCGAATGTAACATAAGATTCCGTGAGTTGTGGTTAATTTTTGTCATAAATCGATTGCGCTGGTTGACTCGACGCACTGAAACACTTTGTCGTTTTGCCGCTAAGGTGGACTAAAGCAATACATCCGTGACAAAAATAGGGCAGCACATCACAAATCTATCCTATGTCGAGACTTGAGCGGGAACTGCCCTAAACGGAATGCTTTGAAGTAGTGTTGAATTGTGGAGCAAGGAGCAATCTGAGCTATAAAGTCTTATGGCAGTATGTTCGCATACCACCCATTACTACTTTAATGCATTCGCGATGACTACAGGGGTTTGCAACCCAACCTACGGGAGCAAATTTTACGATTCGTTGTGTGTGAATTCTAAGATTGCGAACCTGATGTATGAAAACGTTGTCTATGCCCGGGACTGTGGAACATGAATCCAATATTTTGGAACATGAGTCGTTTCCTTTTGGGAGGTCAGTTGCCAATGCTAACATTATTATTCAACGCTCGCGAGATGTTTTTCAGCAGCACAGCTCTATTTGCACTGCAAAACCATCTCGC]
[+] EMBL CNS08N6V [TCATCAATCGTGTAGCAATCAAGGGCGTGGCACTTGACGTATCGGTAAAGTACGTTACTACCTGAAGATGAGTTGCAAACCCATGTTAGCCATGACGCTATTTGCAGTCTCCCTAATCTCGAATGTAACATAAGATTCCGTGAGTTGTGGTTAATTTTTGTCATAAATCGATTGCGCTGGTTGACTCGACGCACTGAAACACTTTGTCGTTTTGCCGCTAAGGTGGACTAAAGCAATACATCCGTGACAAAAATAGGGCAGCACATCACAAATCTATCCTATGTCGAGACTTGAGCGGGAACTGCCCTAAACGGAATGCTTTGAAGTAGTGTTGAATTGTGGAGCAAGGAGCAATCTGAGCTATAAAGTCTTATGGCAGTATGTTCGCATACCACCCATTACTACTTTAATGCATTCGCGATGACTACAGGGGTTTGCAACCCAACCTACGGGAGCAAATTTTACGATTCGTTGTGTGTGAATTCTAAGATTGCGAACCTGATGTATGAAAACGTTGTCTATGCCCGGGACTGTGGAACATGAATCCAATATTTTGGAACATGAGTCGTTTCCTTTTGGGAGGTCAGTTGCCAATGCTAACATTATTATTCAACGCTCGCGAGATGTTTTTCAGCAGCACAGCTCTATTTGCACTGCAAAACCATCTCGC]
[-] EMBL CNS08N6W [ ATTACTACTTTAATGTATTCGCGATGACTACAAGGGTTTGCAACCCAAACTACGGGAGCAAATTTTACGATTCGTTGTGTGTGAATTCTAAGATTGCGAACCTGATGTATGAAAACGTTGTCTATGCCCGGGACTGTGGAACATGAATCCAATATTTTGGAACATGAGTCGTTTCCTTTTGGGAGGTCAGTTGCCAATGCTAACATTATTATTCAACGCTCGCGAGAT ]
consensusID : consensus_6970#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence
[AGATCCCCCGAGGTTGAAGTAGTGTTGAATTGTGGAGCAGAGCAATCTGAGCCATAAAGTCTTATGGCAGTATGTTCGCATACCACCCATTACTACTTTAATGCATTCGCGATGACTACAGGGGTTTGCAACGCAACCCACGATCGGGAGCAAATTTTACGATTCGTTGTGTGTTAATTCTAAGATTGCGAACCTGATGCATGAAAACGTTGTCTATGCCCGGGACTGTGGAACATGAATCCAATATTTTGGAACATGAGTCGTTTCCTTTTCGGAGGTCAGTTGCCAATGCTAACATCATTATTCAACGCTCGCGAGATGTTTTTCAGCAGCACAGCTGCTATTGCACTGCAAAACCATCTCGCGATCGCTGAACATTTGCTGTTAACATTCCGTAAAACAGTGTAAAAGATACTTACATATTTCGATCAACTACCAGTTACTCTGAAGATCGAAGCTTCGTGTGTGACACAGTTGATATCTACATCTTTATATGAGAA]
[+] EMBL AL697410 [AGATCCCCCGAGGTTGAAGTAGTGTTGAATTGTGGAGCAGAGCAATCTGAGCCATAAAGTCTTATGGCAGTATGTTCGCATACCACCCATTACTACTTTAATGCATTCGCGATGACTACAGGGGTTTGCAACGCAACCCACGATCGGGAGCAAATTTTACGATTCGTTGTGTGTTAATTCTAAGATTGCGAACCTGATGCATGAAAACGTTGTCTATGCCCGGGACTGTGGAACATGAATCCAATATTTTGGAACATGAGTCGTTTCCTTTTCGGAGGTCAGTTGCCAATGCTAACATCATTATTCAACGCTCGCGAGATGTTTTTCAGCAGCACAGCTGCTATTGCACTGCAAAACCATCTCGCGATCGCTGAACATTTGCTGTTAACATTCCGTAAAACAGTGTAAAAGATACTTACATATTTCGATCAACTACCAGTTACTCTGAAGATCGAAGCTTCGTGTGTGACACAGTTGATATCTACATCTTTATATGAGAA]
consensusID : consensus_6970#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 267 fasta sequence
[TCGACGCACTGAAACACATAGTCGTTTTGCCGCTAAGGGTGACTAAAGCAATACATCCGTGACAAAAATGGGGCAGCACATCACAAATCTATCCTATGTCGAGACTAGAGCGGGAACGGCCCTAAACGGAAGGCTCCGAAGTAGTGTTGAATTGTGGAGCAAGGAGCAATCTGAGCCATAAAGGCTTATGGCAGTAAGTGCGCATACCACCCACTACTACTTTAATGCATTCGCGACGACTACAGGGGGGGGCAACGCAACCCACGA]
[+] EMBL BX610727 [TCGACGCACTGAAACACATAGTCGTTTTGCCGCTAAGGGTGACTAAAGCAATACATCCGTGACAAAAATGGGGCAGCACATCACAAATCTATCCTATGTCGAGACTAGAGCGGGAACGGCCCTAAACGGAAGGCTCCGAAGTAGTGTTGAATTGTGGAGCAAGGAGCAATCTGAGCCATAAAGGCTTATGGCAGTAAGTGCGCATACCACCCACTACTACTTTAATGCATTCGCGACGACTACAGGGGGGGGCAACGCAACCCACGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6970#1 -TCATCAATCGTGTAGCAATCAAGGGCGTGGCACTTGACGTATCGGTAAAGTACGTTACT 59
consensus_6970#3 ------------------------------------------------------------
consensus_6970#0 CCAGAATCCCCCGAGGTTGTCTCATCAATCGTATAGCAATCAAGGGCGTGACACTTGACG 60
consensus_6970#2 ------------------------------------------------------------
consensus_6970#1 ACCTGAAGATGAGTTGCAAACCCATGTTAGCCATGACGCTATTTGCAGTCTCCCTAATCT 119
consensus_6970#3 ------------------------------------------------------------
consensus_6970#0 TATCGTAAAAGTAC-GTTAGTACATGTAAGCCTTGGCGTTATTTGCAGTCTCTCTAATCT 119
consensus_6970#2 ------------------------------------------------------------
consensus_6970#1 CGAATGTAACATAAGATTCCGTGAGTTGTGGTTAATTTTTGTCATAAATCGATTGCGCTG 179
consensus_6970#3 ------------------------------------------------------------
consensus_6970#0 CGAATGTAAGATAAGATTCCGTGAG-----GCTCTATTTTGTCATAAATCGATTGCGCTG 174
consensus_6970#2 ------------------------------------------------------------
consensus_6970#1 GTTGACTCGACGCACTGAAACACTTTGTCGTTTT-GCCGCTAAGGTGGACTAAA-GCAAT 237
consensus_6970#3 ------TCGACGCACTGAAACACATAGTCGTTTT-GCCGCTAAGGGTGACTAAA-GCAAT 52
consensus_6970#0 GTTGACTCGACGCACTGAAACACTTTGTCGTTTTTGCCGCTAAGGTTGACTAAATGCAAT 234
consensus_6970#2 ------------------------------------------------------------
consensus_6970#1 ACATCCGTGACAAAAATAGGGCAGCACATC-ACAAATCTATCCTATGTCGAGACTTGAGC 296
consensus_6970#3 ACATCCGTGACAAAAATGGGGCAGCACATC-ACAAATCTATCCTATGTCGAGACTAGAGC 111
consensus_6970#0 ACATCCGTGACAAAAATGGGGCAGCACATCTACAAATCTATCCTATGTCGAGACTTGAGC 294
consensus_6970#2 ------------------------------------------------------------
consensus_6970#1 GGGAACTGCCCTAAACGGAATGCTTTGAAGTAGT-GTTGAATTGTGGAGCAAGGAGCAAT 355
consensus_6970#3 GGGAACGGCCCTAAACGGAAGGCTCCGAAGTAGT-GTTGAATTGTGGAGCAAGGAGCAAT 170
consensus_6970#0 GGGAACTGCCCTAAACGGAATGCTTTGAAGTAGTAGTTGAATTGTGGAGCAAGGAGCAAT 354
consensus_6970#2 -----------AGATCCCCCGAGGTTGAAGTAGT-GTTGAATTGTGGAGCA--GAGCAAT 46
* * ******** **************** *******
consensus_6970#1 CTGAGCTATAAAGTCTTATGGCAGTATGTTCGCATACCACCCATTACTACTTTAATGCAT 415
consensus_6970#3 CTGAGCCATAAAGGCTTATGGCAGTAAGTGCGCATACCACCCACTACTACTTTAATGCAT 230
consensus_6970#0 CTGAGCCATAAAGTCTTATGGCAGTATGTTCGCATACCACC-ATTACTACTTTAATGCAT 413
consensus_6970#2 CTGAGCCATAAAGTCTTATGGCAGTATGTTCGCATACCACCCATTACTACTTTAATGCAT 106
****** ****** ************ ** *********** * ****************
consensus_6970#1 TCGCGATGACTACAGGGGTTTGCAACCCAACCTA----CGGGAGCAAATTTTACGATTCG 471
consensus_6970#3 TCGCGACGACTACAGGGGGGGGCAACGCAACCCA----CGA------------------- 267
consensus_6970#0 TCGCGATGACTACAGGGGTTTGCAACGCAACCACGAT-CGGGAGCAAATTTTACGATTCG 472
consensus_6970#2 TCGCGATGACTACAGGGGTTTGCAACGCAACCCACGATCGGGAGCAAATTTTACGATTCG 166
****** *********** ***** ***** **
consensus_6970#1 TTGTGTGTGAATTCTAAGATTGCGAACCTGATGTATGAAAACGTTGTCTATGCCCGGGAC 531
consensus_6970#3 ------------------------------------------------------------
consensus_6970#0 TGTAGTGTAATTCTAAGATTGCNGAACCTGATGCATGAAAACGTNGTCTATGCCCGGGAC 532
consensus_6970#2 TTGTGTGTTAATTCTAAGATTGCGAACCTGATGCATGAAAACGTTGTCTATGCCCGGGAC 226
consensus_6970#1 TGTGG-AACATGAATCCAATATTTTGGAACATGAGTCGTTTCCTTTT-GGGAGGTCAGTT 589
consensus_6970#3 ------------------------------------------------------------
consensus_6970#0 TGTGGCAACATGAATCCAATATTTTGGAACATGAGTCGNNTCCTTNTCAGGAGGTCAGTT 592
consensus_6970#2 TGTGG-AACATGAATCCAATATTTTGGAACATGAGTCGTTTCCTTTT-CGGAGGTCAGTT 284
consensus_6970#1 GCCAATGCTAACATTAT-TATTCAACGCT---CGCGAGATGTTTTTCAGCAGCACAGCT- 644
consensus_6970#3 ------------------------------------------------------------
consensus_6970#0 GCCAATGCTAACATCATATATTCAACGCTACGCGANATGTNCTCTCANGCAGCACAGCTG 652
consensus_6970#2 GCCAATGCTAACATCAT-TATTCAACGCT---CGCGAGATGTTTTTCAGCAGCACAGCTG 340
consensus_6970#1 CTATTTGCACTGCAAAACCATCTCGC---------------------------------- 670
consensus_6970#3 ------------------------------------------------------------
consensus_6970#0 CTATTGCAACTGCAAAACCATCTCGCGATCGCTGAACATTGCTCGTNAACATTNCCGTAC 712
consensus_6970#2 CTATT-GCACTGCAAAACCATCTCGCGATCGCTGAACATTTGCTGTTAACATTCCGTAAA 399
consensus_6970#1 ------------------------------------------------------------
consensus_6970#3 ------------------------------------------------------------
consensus_6970#0 ANACCAGTGTAACAGATACTTACATATNATCGATCAATAGCAGTNACTNCTGNAANATCG 772
consensus_6970#2 ACAGTGTAAAAGATACTTACATATTTCGATCAACTACCAGTTACTCTGAAGATCGAAGCT 459
consensus_6970#1 ------------------------------------------------------------
consensus_6970#3 ------------------------------------------------------------
consensus_6970#0 AAACNTCGGTGTGACACAGTTGACTATCTACATCTTTATATGCACAACAGGGTTAAGAGA 832
consensus_6970#2 TCGTGTGTGACACAGTTGATATCTACATCTTTATATGAGAA------------------- 500
consensus_6970#1 ---------
consensus_6970#3 ---------
consensus_6970#0 CNAGGATAN 841
consensus_6970#2 ---------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||