These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6972#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 927 fasta sequence [TTCCTCGAGAACTGTTGGCCAACTGGACTGTGCAGTCGTAGATTTGTTATGAAAAGTGCAATTGTTTAGCTTTAGTTCCACACAAATGTATGAAATAAATTAAGGATTTTCACCAGTAAAACACGCACAAACGAAACATTGCGATGGACGCCCTGAACACGTACTACAGCAAGGAGGAGTACGTGGAAACAGCTTCCGGCAACAAGGTGAGCCGCCAGACGGTACTGTGCGGCTCGCAAAACATTGTCCTCCACGGGAAAGTGATCGTGCAGAGCGGGGCCATCATCCGCGGTGATTTGGCCGCCGTCCGCACCGGACGGTACTGCGTCATCTCGAAGGGTTCGGTCGTGCGGCCACCGTACAAGCAGTTCAGCAAGGGTGTTGCATTTTTCCCGCTGCAGATCGGCGATCATGTGTTCATTGGCGAGGGAGCCGTCGTTTCAGCGGCATCGATCGGTTCCTACGTTTACATCGGCAAGAATGCTGTGATAGGACGACGATGCATACTGAAGGATAACTGTATCGTGGAGGACGGTGCCGTTGTGCCGCCGGAAACAACAATTGCAAGTTACATGCGTTACACCGCGGACGGAAGGATCGAGGGTGGACAGGGCAATCCCGATTTTGTGCCCCACGGTATGCTGGATCTGATGATCGAGTTTACCAAATCCTACTACGACCATTTCGTTCCGGCACCCAACTGACGGCAACGTGAACTCTCGGCCGTGCCGAGAGTGCCACGAGTGCAGTGAGAGAAGGAAGGTGCATCACTCCCCCGTTTTCAGCAATTCCACAACTCGTA-TCGTCTGCACTGCGGAAACCGATCATAACCATTACGAGCGCATAGGCATATATTTATTCACAGCA-AGCTAACCAATAAAATCGTGTATCGTCAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCC] [-] EMBL CNS0953X [TTCCTCGAGAACTGTTGGCCAACTGGACTGTGCAGTCGTAGATTTGTTATGAAAAGTGCAATTGTTTAGCTTTAGTTCCACACAAATGTATGAAATAAATTAAGGATTTTCACCAGTAAAAAACGCACAAACGAAACATTGCGATGGACGCCCTGAACACGTACTACAGCAAGGAGGAGTACGTGGAAACAGCTTCCGGCAACAAGGTGAGCCGCCAGACGGTACTGTGCGGCTCGCAAAACATTGTCCTCCACGGGAAAGTGATCGTGCAGAGCGGGGCCATCATCCGCGGTGATTTGGCCGCCGTCCGCACCGGACGGTACTGCGTCATCTCGAAGGGTTCGGTCGTGCGGCCACCGTACAAGCAGTTCAGCAAGGGTGTTGCATTTTTCCCGCTGCAGATCGGCGATCATGTGTTTATTGGCGAGGGAGCCGTCGTTTCAGCGGCATCGATCGGTTCCTACGTTTACATCGGCAAAAATGCTGTGATAGGACGACGATGCATACTGAAGGATAACTGTATCGTGGAGGACGGTGCCGTTGTGCCGCCGGAAACAACAATTGCAAGTTACATGCGTTACACCGCGGACGGAAGGATCGAGGGTGGACAGGGCAATCCCGATTTTGTGCCCCACGGTATGCTGGATCTGATGATCGAGTTTACCAAATCCTACTACGACCATTTCGTTCCGGCACCCAACTGACGGCAACGTGAACTCTCGGCCGTGCCGAGAGTGCCACGAGTGCAGTGAGAGAAGGAAGGTGCATCACTCCCCCGTTTTCAGCAATTCCACAACTCGTATTTGTCTGCACTGCGGAAACCGATCATAACCATTACGAGCGCATAGGCATATATTTATTCACAGCAGAGCTAACCAATAGAATCG ] [+] EMBL CNS0953W [ CTGTG AGTCGTAGATTTGTTATGAAAAGTGCAATTGTTTAGCTTTAGTTCCACACAAATGTATGAAATAAATTAAGGATTTTAACCAGTAAAACACGCACAAACGAAACATTGCGATGGACGCCCTGAACACGTACTACAGCAAGGAGGAGTACGTGGAAACAGCTTCCGGCAACAAGGTGAGCCGCCAGACGGTACTGTGCGGCTCGCAAAACATTGTCCTCCACGGGAAAGTGATCGTGCAGAGCGGGGCCATCATCCGCGGTGATTTGGCCGCCGTCCGCACCGGACGGTACTGCGTCATCTCGAAGGGTTCGGTCGTGCGGCCACCGTACAAGCAGTTCAGCAAGGGTGTTGCATTTTTCCCGCTGCAGATCGGCGATCATGTGTTCATTGGCGAGGGAGCCGTCGTTTCAGCGGCATCGATCGGTTCCTACGTTTACATCGGCAAGAATGCTGTGATAGGACGACGATGCATACTGAAGGATAACTGTATCGTGGAGGACGGTGCCGTTGTGCCGCCGGAAACAACAATTGCAAGTTACATGCGTTACACCGCGGACGGAAGGATCGAGGGTGGACAGGGCAATCCCGATTTTGTGCCCCACGGTATGCTGGATCTGATGATCGAGTTTACCAAATCCTACTACGACCATTTCGTTCCGGCACCCAACTGACGGCAACGTGAACTCTCGGCCGTG CGAGAGTGCCACGAGTGCAGTGAGAGAAGGAAGGTGCATCACTCCCCCGTTTTCAGCAATTCCACAACTCGTA TCGTCTGCACTGCGGAAACCGATCATAACCATTACGAGCGCATAGGCATATATTTATTCACAGCA AGCTAACCAATAAAATCGTGTATCGTC AAAAAAAAAAAAAGGCCACATGTGCCCGAGCC] [+] EMBL CNS099H3 [ TTTGTTATG AAAGTGCAATTGTTT GCTTTAGTTCCACACAAATGTATGAAATAAATTAAGGATTTTCACCAGTAAAACACGCACAAACGAAACATTGCGATGGACGCCCTGAACACGTACTACAGCAAGGAGGAGTACGTGGAAACAGCTTCCGGCAACAAGGTGAGCCGCCAGACGGTACTGTGCGGCTCGCAAAACATTGTCCTCCACGGGAAAGTGATCGTGCAGAGCGGGGCCATCATCCGCGGTGATTTGGCCGCCGTCCGCACCGGACGGTACTGCGTCATCTCGAAGGGTTCGGTCGTGCGGCCACCGTACAAGCAGTTCAGCAAGGGTGTTGCATTTTTCCCGCTGCAGATCGGCGATCATGTGTTCATTGGCGAGGGAGCCGTCGTTTCAGCGGCATCGATCGGTTCCTACGTTTACATCGGCAAGAATGCTGTGATAGGACGACGATGCATACTGAAGGATAACTGTATCGTGGAGGACGGTGCCGTTGTGCCGCCGGAAACAACAATTGCAAGTTACATGCGTTACACCGCGGACGGAAGGATCGAGGGTGGACAGGGCAATCCCGATTTTGTGCCCCACGGTATGCTGGATCTGATGATCGAGTTTACCAAATCCTACTACGACCATTTCGTTCCGGCACCCGACTGACGGCAACGTGAACTCTCGGCCGTG CGAGAGTGCCACGAGTGCAGTGAGAGAAGGAAGGTGCATCACTCCCCCGTTTTCAGCAATTCCACAACTCGTA TCGTCTGCACTGCGGAAACCGATCATAACCATTACGAGCGCATAGGCATATATTTATTCACAGCA AGCTAACCAATAAAATCGTGTATCGTCAAAAAAAAAAAAAAGGGCACATGgtgttct ] [+] EMBL BM615480 [ ccgTTGCTTAGTTTTAGTTCCACACAAATGTATGAAATAAATTAAGGATTTTCACTAGTAAAACACGCACAAACGAACCATTGCGATGGACGCCCTGAACACGTACTACAGCAAGGAGGAGTACGTGGAAACAGCTTCCGGCAACAAGGTGAGCCGCCAGACGGTACTATGCGGCTCCCAAAACATTGTCCTCCACGGGAAAGTGATCGTGCAGAGTGGGGCCATCATCCGCGGTGATTTGGCCGCCGTCCGCACCGGACGGTACTGCGTCATCTCGAAGGGTTCCGTCGTGCGGCCACCGTACAAGCAGTTCAGCAAGGGTGTTGCATTTTTCCCGCTGCAGATCGGCGATCATGTGTTCATTGGCGAGGGAGCCGTCGTTTCAGCGGCATCGATCGGTTCCTACGTTTACATTGGCAAGAATGCTGTGATA ] [-] EMBL CNS099H4 [ CAGCAAGGAGGAGTACGTGGAAACAGCTTCCGGCAACAAGGTGAGCCGCCAGACGGTACTGTGCGGCTCGCAAAACATTGTCCTCCACGGGAAAGTGATCGTGCAGAGCGGGGCCATCATCCGCGGTGATTTGGCCGCCGTCCGCACCGGACGGTACTGCGTCATCTCGAAGGGTTCGGTCGTGCGGCCACCGTACAAGCAGTTCAGCAAGGGTGTTGCATTTTTCCCGCTGCAGATCGGCGATCATGTGTTCATTGGCGAGGGAGCCGTCGTTTCAGCGGCATCGATCGGTTCCTACGTTTACATCGGCAAGAATGCTGTGATAGGACGACGATGCATACTGAAGGATCACTGTATCGTGGAGGACGGTGCCGTTGTGCCGCCGGAAACAACAATTGCAAGTTACATGCGTTACACCGCGGACGGAAGGATCGAGGGTGGACAGGGCAATCCCGATTTTGTGCCCCACGGTATGCTGGATCTGATGATCGAGTTTACCAAATCCTACTACGACCATTTCGTTCCGGCACCCGACTGACGGCAACGTGAACTCTCGGCCGTGCCGAGAGTGCCACGAGTGCAGTGAGAGAAGGAAGGTGCATCACTCCCCCGTTTTCAGCAATTCCACAACTCGTA TCGTCTGCACTGCGGAAACCGATCATAACCATTACGAGCGC AGGCATATATTTATTCACAGCA AGCTAACCAATAAAATCGTGTATCGTCccccc ] consensusID : consensus_6972#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [TCCACACAAATCGATGGACGCCCTGAACACGTACTACAGTAAGGAGGAGTACGTGGAAACAGCTTCCGGCAACAAGGTGAGCCGCCAGACGGTACTATGCGGCTCCCAAAACATTGTCCTCCACGGGAAAGTGATCGTGCAGAGTGGGGCCATCATCCGCGGTGATTTGGCCGCCGTCCGCACCGGACGGTACTGCGTCATCTCGAAGGGTTCCGTCGTGCGGCCACCGTACAAGCAGTTCAGCAAGGGTGTTGCATTTTTCCCGCTGCAGATCGGCGATCATGTGTTCATTGGCGAGGGAGCCGTCGTTTCAGCGGCATCGATCGGTTCCTACGTTTACATTGGCAAGAATGCTGTGATAGGACGACGATGCATACTGAAGGATAACTGTATCGTGGAGGACGGTGCCGTTGTGCCGCCGGAAACAACAATTGCAAGTTACATGCGTTACACTGCGGACGGAAGGATCGAGGGTGGACAGGGCAATCCCGATTTTGTGCCCCACGGTATGCTGGATCTGATGATCGAGTTTACCAAATCCTACTACGACCATTTCGTTCCGGCACCCAACTGACGGCAACGTGAACTCTTGGCCGTGCCGAGAGTGCCACGAGTGCAGTGATAGAAGGAANGTGCATCACTCCCCCCGTTTTCAGCAATTCCACAACTCGCATCGTCTGCACTGCGGAAACT] [+] EMBL BX627709 [TCCACACAAATCGATGGACGCCCTGAACACGTACTACAGTAAGGAGGAGTACGTGGAAACAGCTTCCGGCAACAAGGTGAGCCGCCAGACGGTACTATGCGGCTCCCAAAACATTGTCCTCCACGGGAAAGTGATCGTGCAGAGTGGGGCCATCATCCGCGGTGATTTGGCCGCCGTCCGCACCGGACGGTACTGCGTCATCTCGAAGGGTTCCGTCGTGCGGCCACCGTACAAGCAGTTCAGCAAGGGTGTTGCATTTTTCCCGCTGCAGATCGGCGATCATGTGTTCATTGGCGAGGGAGCCGTCGTTTCAGCGGCATCGATCGGTTCCTACGTTTACATTGGCAAGAATGCTGTGATAGGACGACGATGCATACTGAAGGATAACTGTATCGTGGAGGACGGTGCCGTTGTGCCGCCGGAAACAACAATTGCAAGTTACATGCGTTACACTGCGGACGGAAGGATCGAGGGTGGACAGGGCAATCCCGATTTTGTGCCCCACGGTATGCTGGATCTGATGATCGAGTTTACCAAATCCTACTACGACCATTTCGTTCCGGCACCCAACTGACGGCAACGTGAACTCTTGGCCGTGCCGAGAGTGCCACGAGTGCAGTGATAGAAGGAANGTGCATCACTCCCCCCGTTTTCAGCAATTCCACAACTCGCATCGTCTGCACTGCGGAAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6972#0 TTCCTCGAGAACTGTTGGCCAACTGGACTGTGCAGTCGTAGATTTGTTATGAAAAGTGCA 60 consensus_6972#1 ------------------------------------------------------------ consensus_6972#0 ATTGTTTAGCTTTAGTTCCACACAAATGTATGAAATAAATTAAGGATTTTCACCAGTAAA 120 consensus_6972#1 ------------------------------------------------------------ consensus_6972#0 ACACGCACAAACGAAACATTGCGATGGACGCCCTGAACACGTACTACAGCAAGGAGGAGT 180 consensus_6972#1 ----------TCCACACAAATCGATGGACGCCCTGAACACGTACTACAGTAAGGAGGAGT 50 * * *** **************************** ********** consensus_6972#0 ACGTGGAAACAGCTTCCGGCAACAAGGTGAGCCGCCAGACGGTACTGTGCGGCTCGCAAA 240 consensus_6972#1 ACGTGGAAACAGCTTCCGGCAACAAGGTGAGCCGCCAGACGGTACTATGCGGCTCCCAAA 110 ********************************************** ******** **** consensus_6972#0 ACATTGTCCTCCACGGGAAAGTGATCGTGCAGAGCGGGGCCATCATCCGCGGTGATTTGG 300 consensus_6972#1 ACATTGTCCTCCACGGGAAAGTGATCGTGCAGAGTGGGGCCATCATCCGCGGTGATTTGG 170 ********************************** ************************* consensus_6972#0 CCGCCGTCCGCACCGGACGGTACTGCGTCATCTCGAAGGGTTCGGTCGTGCGGCCACCGT 360 consensus_6972#1 CCGCCGTCCGCACCGGACGGTACTGCGTCATCTCGAAGGGTTCCGTCGTGCGGCCACCGT 230 ******************************************* **************** consensus_6972#0 ACAAGCAGTTCAGCAAGGGTGTTGCATTTTTCCCGCTGCAGATCGGCGATCATGTGTTCA 420 consensus_6972#1 ACAAGCAGTTCAGCAAGGGTGTTGCATTTTTCCCGCTGCAGATCGGCGATCATGTGTTCA 290 ************************************************************ consensus_6972#0 TTGGCGAGGGAGCCGTCGTTTCAGCGGCATCGATCGGTTCCTACGTTTACATCGGCAAGA 480 consensus_6972#1 TTGGCGAGGGAGCCGTCGTTTCAGCGGCATCGATCGGTTCCTACGTTTACATTGGCAAGA 350 **************************************************** ******* consensus_6972#0 ATGCTGTGATAGGACGACGATGCATACTGAAGGATAACTGTATCGTGGAGGACGGTGCCG 540 consensus_6972#1 ATGCTGTGATAGGACGACGATGCATACTGAAGGATAACTGTATCGTGGAGGACGGTGCCG 410 ************************************************************ consensus_6972#0 TTGTGCCGCCGGAAACAACAATTGCAAGTTACATGCGTTACACCGCGGACGGAAGGATCG 600 consensus_6972#1 TTGTGCCGCCGGAAACAACAATTGCAAGTTACATGCGTTACACTGCGGACGGAAGGATCG 470 ******************************************* **************** consensus_6972#0 AGGGTGGACAGGGCAATCCCGATTTTGTGCCCCACGGTATGCTGGATCTGATGATCGAGT 660 consensus_6972#1 AGGGTGGACAGGGCAATCCCGATTTTGTGCCCCACGGTATGCTGGATCTGATGATCGAGT 530 ************************************************************ consensus_6972#0 TTACCAAATCCTACTACGACCATTTCGTTCCGGCACCCAACTGACGGCAACGTGAACTCT 720 consensus_6972#1 TTACCAAATCCTACTACGACCATTTCGTTCCGGCACCCAACTGACGGCAACGTGAACTCT 590 ************************************************************ consensus_6972#0 CGGCCGTGCCGAGAGTGCCACGAGTGCAGTGAGAGAAGGAAGGTGCATCACTCCCCC-GT 779 consensus_6972#1 TGGCCGTGCCGAGAGTGCCACGAGTGCAGTGATAGAAGGAANGTGCATCACTCCCCCCGT 650 ******************************* ******** *************** ** consensus_6972#0 TTTCAGCAATTCCACAACTCGTATCGTCTGCACTGCGGAAACCGATCATAACCATTACGA 839 consensus_6972#1 TTTCAGCAATTCCACAACTCGCATCGTCTGCACTGCGGAAACT----------------- 693 ********************* ******************** consensus_6972#0 GCGCATAGGCATATATTTATTCACAGCAAGCTAACCAATAAAATCGTGTATCGTCAAAAA 899 consensus_6972#1 ------------------------------------------------------------ consensus_6972#0 AAAAAAAAAGGCCACATGTGCCCGAGCC 927 consensus_6972#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||