These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6977#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 752 fasta sequence [CCGGAGTTGTTGCAGCGTACATTTGTTTGTTAGCTTATCTCTTCAAACCCTAAACAGACAGTGATAAGTGAGAACTAATATATCGTTCATATCTGCCCAAACGAAGGATAGTCGCACGATGGAGGCAAAAGTGAACTACATCAAAACACGGCTCGTGCAGCAGGTGCTGACCAGCCACGAAAGCTTCCGTGGGATGGAAGTCGTGCGCAGTGACCTGCACACACC-GAAACATCTCGACGGGTTCATGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGAAACATCCACCGTTCCGC-TGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCC-GCAAGCAAAACC-TTGCCCACGTCCTCTTCCCGAACGAGATCAACA-TCTACGCGAACGTGCTGCCCCA-GTTTGATGCGTTTCTCGCCGAAGCTGGCTC-GGAGCTGCGGGCAACGCGCTGGTGCCCCCGGGTGTATCTCA-GCACGA-TGGGCCAGTTCCGCGAGTACAG-CGAACTGTTCGAAACGTTCCTCGTGATGGAAAACGTGACACCGCGGGGGTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGCACATCTGACGCTGA-TGGTGGAGA-TCA-TC-GCCCGCTATCACGC-TTGGC-TC-GTACGCGC-TGCGCATCTCGAAGGAGGACGCCGGACCGGNGCTGGGAGCCGGGCNCGTGGGGCGCACGTTGNTGCCGGGTTAGAGANCGTTCGCNTGCGAGGGA] [+] EMBL BM639151 [CCGGAGTTGTTGCAGCGTACATTTGTTTGTTAGCTTATCTCTTCAAACCCTAAACAGACAGTGATAAGTGAGAACTAATATATCGTTCATATCTGCCCAAACGAAGGATAGTCGCACGATGGAGGCAAAAGTGAACTACATCAAAACGCGGCTCGTGCAGCAGGTGCTGACCAGCCACGAATGCTTCCGTGGGATGGAAGTCGTGCGCAGTGACCTGCACACCCC GAAACATCTCGACGGGTTCATGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGA ATCCACCGTTCCGC TGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCC GCAAGCAAAACC TTGCCCACGTCCTCTTCCCGAACGAGATCAACA TCTACGCGAACGTGCTGCCCCA GTTTGATGCGTTTCTCGCCGAAGCTGGCTC GGAGCTGCGGGCAACGCGCTGGTGCCCCCGGGTGTATCTCA GCACGA TGGGCCAGTTCCGCGAGTACAG CGAACTGTTCGAAACGTTCCTCGTGATGGAAAACGTGACACCGCGAGGTTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGCACATCTGACGCTGA TGGGGGAGA TCA TC GCCCGCTATCACGC TTG ] [+] EMBL BM620889 [ ccgATATATCGTTCATTTCTGCCCAAACGAAGGATAGTCGCACGATGGAGGCAAAAGTGAACTACATCAAAACACGGCTCGTGCAGCAGGTGCTGACCAGCCACGAAAGCTTCCGTGGGATGGAAGTCGTGCGCAGTGACCTGCACACACC GAAACATCTCGACGGGTTCATGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGAAACATCCACCGTTCCGC TGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCC GCAAGCAAAACC TTGCCCACGTCCTCTTCCCGAACGAGATCAACA TCTACGCGAACGTGCTGCCGCA GTTTGATGCGTTTCTCGCCGCAGCTGGTTC GGACCTGCGGGCAACGCGCTGGTGCCCCCGGGTGTATCTCA GCACGA TGGGCCAGTTCCGCGAGTACAG CGAACTGTTCGAAACGTTCCTCGTGATGGAAAACGTGACACCGCGGGGGTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGCACATCTGACGCTGA TGGTGGAGA TCA TC GCCCGCTATCACGC TT GC TC GTACGCGC TGCGCATC ] [+] EMBL BX469226 [ cagAGTCGC C A CGAGGTTAAAGTGAACTACATCAAAACACGGCTCGTGCAGCAGGTGCTGACCAGCCACGAAAGCTTCCGTGGGATGGAAGTCGTGCGCAGTGACCTGCACACACCTGAAACATCTCGACGGGTTCATGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGAAACATCCACCGTTCCGCGTGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCCTGCAAGCAAAACCGTTGCCCACGTCCTCTTCCCGAACGAGATCAACAGTCTACGCGAACGTGCTGCCGCAGGTTTGATGCGTTTCTCGCCGCAGCTGGTTCAGGACCTCCGGGCAACGCGCTGGTGCCCCCGGGTGTATCTCAGGCACGAGTGGGCCAGTTCCGCGAGTACAGNNGAACTGTTCGAAACGTTCCTCGTGATGGAAAACGTGACACCGCGGGGGTTCCGTACTGGGCCGNGGNTAGATCTGGACGAGGCACATCTGACGCTGAGTGGTGGAGATTCAGTCGGCCGGTTATCACGCGTTGGCGTCGGTACGCGCTTGCGCAAGTCGAAGGAGGACGCCGGACCGGNGCTGGGAGCCGGGCNCGTGGGGCGCACGTTGNTGCCGGGTTAGAGANCGTTCGCNTGCGAGGGA] [+] EMBL AGA281945 [ CTGCACACACC GAAACATCTCGACGGGTTCATGTCCGCCATCCATCAATTGACACTGACCTTGCGCCACAGTGCAAGTGGGGAAACATCCACCGTTCCGC TGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCC GCAAGCAAAACC TTGCCCACGTCCTCTTCCCGAACGAGATCAACA TCTACGCAAACGTGCTGCCCCA GTTTGATGCATTTCTCGCCGAAGCTGGCTC GGAGCTGCGGGCAACGCGCTGGTGCCCCCGG ] consensusID : consensus_6977#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 668 fasta sequence [CCGGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGAAACATCCACCGTTCCGCTGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCCGCAAGCAAAACCTTGCCCACGTCCTCTTCCCGAACGAGATCAACATCTACGCGAACGTGCTGCCGCAGTTTGATGCGTTTCTCGCCGCAGCTGGTTCGGACCTGCGGGCAACGCGCTGGTGCCCCCGGGTGTATCTCAGCACGATGGGCCAGTTCCGCGAGTACAGCGAACTGTTCGAAACGTTCCTCGTGATGGAAAACGTGACACCGCGGGGGTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGCACATCTGACGCTGATGGTGGAGATCATCGCCCGCTATCACGCTTGCTCGTACGCGCTGCGCATCAAAGACCCGCCCGCCCTGGACCGGCTCGTGGGGCGCATTGTGCCGTTGAACTTCCTGCAGGATGGGAAGGTATTTTTCGAAAGCTACGACGTAGTGTTCCGACTCGCAGCGGAGCGTCTGTTTGCGTACGTTGATGCGGTTCCTGCGGAGCTGGACAGTGAGCGGTTCCGGCAGCACGTGCACACCCTGCGCACCAAGTATGGGCCGAATCAGTCCGAGCTGATGCAGAAATTTCTGCACCGTGATC] [+] EMBL BM577405 [CCGGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGAAACATCCACCGTTCCGCTGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCCGCAAGCAAAACCTTGCCCACGTCCTCTTCCCGAACGAGATCAACATCTACGCGAACGTGCTGCCGCAGTTTGATGCGTTTCTCGCCGCAGCTGGTTCGGACCTGCGGGCAACGCGCTGGTGCCCCCGGGTGTATCTCAGCACGATGGGCCAGTTCCGCGAGTACAGCGAACTGTTCGAAACGTTCCTCGTGATGGAAAACGTGACACCGCGGGGGTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGCACATCTGACGCTGATGGTGGAGATCATCGCCCGCTATCACGCTTGCTCGTACGCGCTGCGCATCAAAGACCCGCCCGCCCTGGACCGGCTCGTGGGGCGCATTGTGCCGTTGAACTTCCTGCAGGATGGGAAGGTATTTTTCGAAAGCTACGACGTAGTGTTCCGACTCGCAGCGGAGCGTCTGTTTGCGTACGTTGATGCGGTTCCTGCGGAGCTGGACAGTGAGCGGTTCCGGCAGCACGTGCACACCCTGCGCACCAAGTATGGGCCGAATCAGTCCGAGCTGATGCAGAAA ] [+] EMBL BM629315 [ ccgGCGCCACAGTGCAAGTGGGGA ATCCACCGTTCCGCTGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCCGCAAGCAAAACCTTGCCCACGTCCTCTTCCCGAACGAGATCAACATCTACGCGAACGTGCTGCCCCAGTTTGATGCGTTTCTCGCCGAAGCTGGCTCGGAGCTGCGGGCAACGCGCTGGTGCCCCCGGGTGTATCTCAGCACGATGGGCCAGTTCCGCGAGTACAGCGAACTGTTCGAAACGTTCCTCGTGATGGAAAACGTGACACCGCGAGGTTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGCACATCTGACGCTGATGGTGGAGATCATCGCCCGCTATCACGCTTGCTCGTACGCGCTGCGCATCAAAGACCCGCCCGCCCTGGACCGGCTCGTGGAGCGCATTGTGCCGTTGAACTTCCTGCAGGATGGGAAGGTATTTTTCGAAAGCTACGACGTAGTGTTCCGGCTCGCAGCGGAGCGTCTGTTTGCGTACGTTGATGCGGTTCCTGCGGAGCTGGACAGTGAGCGGTTCCGGCAGCACGTGCACACCCTGCGCACCAAGTATGGGCCGAATCAGTCCGAGCTGATGCAGAAATTTCTGCACCGTGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6977#0 CCGGAGTTGTTGCAGCGTACATTTGTTTGTTAGCTTATCTCTTCAAACCCTAAACAGACA 60 consensus_6977#1 ------------------------------------------------------------ consensus_6977#0 GTGATAAGTGAGAACTAATATATCGTTCATATCTGCCCAAACGAAGGATAGTCGCACGAT 120 consensus_6977#1 ------------------------------------------------------------ consensus_6977#0 GGAGGCAAAAGTGAACTACATCAAAACACGGCTCGTGCAGCAGGTGCTGACCAGCCACGA 180 consensus_6977#1 ------------------------------------------------------------ consensus_6977#0 AAGCTTCCGTGGGATGGAAGTCGTGCGCAGTGACCTGCACACACCGAAACATCTCGACGG 240 consensus_6977#1 ------------------------------------------------------------ consensus_6977#0 GTTCATGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGAAAC 300 consensus_6977#1 ---CCGGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGAAAC 57 * ****************************************************** consensus_6977#0 ATCCACCGTTCCGCTGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCCGCAAGCAAAA 360 consensus_6977#1 ATCCACCGTTCCGCTGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCCGCAAGCAAAA 117 ************************************************************ consensus_6977#0 CCTTGCCCACGTCCTCTTCCCGAACGAGATCAACATCTACGCGAACGTGCTGCCCCAGTT 420 consensus_6977#1 CCTTGCCCACGTCCTCTTCCCGAACGAGATCAACATCTACGCGAACGTGCTGCCGCAGTT 177 ****************************************************** ***** consensus_6977#0 TGATGCGTTTCTCGCCGAAGCTGGCTCGGAGCTGCGGGCAACGCGCTGGTGCCCCCGGGT 480 consensus_6977#1 TGATGCGTTTCTCGCCGCAGCTGGTTCGGACCTGCGGGCAACGCGCTGGTGCCCCCGGGT 237 ***************** ****** ***** ***************************** consensus_6977#0 GTATCTCAGCACGATGGGCCAGTTCCGCGAGTACAGCGAACTGTTCGAAACGTTCCTCGT 540 consensus_6977#1 GTATCTCAGCACGATGGGCCAGTTCCGCGAGTACAGCGAACTGTTCGAAACGTTCCTCGT 297 ************************************************************ consensus_6977#0 GATGGAAAACGTGACACCGCGGGGGTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGC 600 consensus_6977#1 GATGGAAAACGTGACACCGCGGGGGTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGC 357 ************************************************************ consensus_6977#0 ACATCTGACGCTGATGGTGGAGATCATCGCCCGCTATCACGCTTGGCTCGTACGCGCTGC 660 consensus_6977#1 ACATCTGACGCTGATGGTGGAGATCATCGCCCGCTATCACGCTTG-CTCGTACGCGCTGC 416 ********************************************* ************** consensus_6977#0 GCATCTCGAAGGAGGACGCC--GGACCGGNGCTGGGAGCCGGGCNCGTGGGGCGCACGTT 718 consensus_6977#1 GCATCAAAGACCCGCCCGCCCTGGACCGGCTCGTGGGGC--GCATTGTGCCGTTGAACTT 474 ***** * * **** ******* * ** ** * *** * * ** consensus_6977#0 GNTGCCGGGTTAGAGANCGTTCGCNTGCGAGGGA-------------------------- 752 consensus_6977#1 CCTGCAGGATGGGAAGGTATTT-TTCGAAAGCTACGACGTAGTGTTCCGACTCGCAGCGG 533 *** ** * ** ** * ** * consensus_6977#0 ------------------------------------------------------------ consensus_6977#1 AGCGTCTGTTTGCGTACGTTGATGCGGTTCCTGCGGAGCTGGACAGTGAGCGGTTCCGGC 593 consensus_6977#0 ------------------------------------------------------------ consensus_6977#1 AGCACGTGCACACCCTGCGCACCAAGTATGGGCCGAATCAGTCCGAGCTGATGCAGAAAT 653 consensus_6977#0 --------------- consensus_6977#1 TTCTGCACCGTGATC 668 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||