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Anopheles gambiae
cluster # 6977 cluster # 6977       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6977#0 length = 752 sequences # 4  
consensus_6977#1 length = 668 sequences # 2  

consensusID : consensus_6977#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 752
fasta sequence
                              [CCGGAGTTGTTGCAGCGTACATTTGTTTGTTAGCTTATCTCTTCAAACCCTAAACAGACAGTGATAAGTGAGAACTAATATATCGTTCATATCTGCCCAAACGAAGGATAGTCGCACGATGGAGGCAAAAGTGAACTACATCAAAACACGGCTCGTGCAGCAGGTGCTGACCAGCCACGAAAGCTTCCGTGGGATGGAAGTCGTGCGCAGTGACCTGCACACACC-GAAACATCTCGACGGGTTCATGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGAAACATCCACCGTTCCGC-TGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCC-GCAAGCAAAACC-TTGCCCACGTCCTCTTCCCGAACGAGATCAACA-TCTACGCGAACGTGCTGCCCCA-GTTTGATGCGTTTCTCGCCGAAGCTGGCTC-GGAGCTGCGGGCAACGCGCTGGTGCCCCCGGGTGTATCTCA-GCACGA-TGGGCCAGTTCCGCGAGTACAG-CGAACTGTTCGAAACGTTCCTCGTGATGGAAAACGTGACACCGCGGGGGTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGCACATCTGACGCTGA-TGGTGGAGA-TCA-TC-GCCCGCTATCACGC-TTGGC-TC-GTACGCGC-TGCGCATCTCGAAGGAGGACGCCGGACCGGNGCTGGGAGCCGGGCNCGTGGGGCGCACGTTGNTGCCGGGTTAGAGANCGTTCGCNTGCGAGGGA]

[+] EMBL BM639151             [CCGGAGTTGTTGCAGCGTACATTTGTTTGTTAGCTTATCTCTTCAAACCCTAAACAGACAGTGATAAGTGAGAACTAATATATCGTTCATATCTGCCCAAACGAAGGATAGTCGCACGATGGAGGCAAAAGTGAACTACATCAAAACGCGGCTCGTGCAGCAGGTGCTGACCAGCCACGAATGCTTCCGTGGGATGGAAGTCGTGCGCAGTGACCTGCACACCCC GAAACATCTCGACGGGTTCATGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGA   ATCCACCGTTCCGC TGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCC GCAAGCAAAACC TTGCCCACGTCCTCTTCCCGAACGAGATCAACA TCTACGCGAACGTGCTGCCCCA GTTTGATGCGTTTCTCGCCGAAGCTGGCTC GGAGCTGCGGGCAACGCGCTGGTGCCCCCGGGTGTATCTCA GCACGA TGGGCCAGTTCCGCGAGTACAG CGAACTGTTCGAAACGTTCCTCGTGATGGAAAACGTGACACCGCGAGGTTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGCACATCTGACGCTGA TGGGGGAGA TCA TC GCCCGCTATCACGC TTG                                                                                                              ]
[+] EMBL BM620889             [                                                                          ccgATATATCGTTCATTTCTGCCCAAACGAAGGATAGTCGCACGATGGAGGCAAAAGTGAACTACATCAAAACACGGCTCGTGCAGCAGGTGCTGACCAGCCACGAAAGCTTCCGTGGGATGGAAGTCGTGCGCAGTGACCTGCACACACC GAAACATCTCGACGGGTTCATGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGAAACATCCACCGTTCCGC TGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCC GCAAGCAAAACC TTGCCCACGTCCTCTTCCCGAACGAGATCAACA TCTACGCGAACGTGCTGCCGCA GTTTGATGCGTTTCTCGCCGCAGCTGGTTC GGACCTGCGGGCAACGCGCTGGTGCCCCCGGGTGTATCTCA GCACGA TGGGCCAGTTCCGCGAGTACAG CGAACTGTTCGAAACGTTCCTCGTGATGGAAAACGTGACACCGCGGGGGTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGCACATCTGACGCTGA TGGTGGAGA TCA TC GCCCGCTATCACGC TT GC TC GTACGCGC TGCGCATC                                                                                       ]
[+] EMBL BX469226             [                                                                                                          cagAGTCGC C A CGAGGTTAAAGTGAACTACATCAAAACACGGCTCGTGCAGCAGGTGCTGACCAGCCACGAAAGCTTCCGTGGGATGGAAGTCGTGCGCAGTGACCTGCACACACCTGAAACATCTCGACGGGTTCATGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGAAACATCCACCGTTCCGCGTGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCCTGCAAGCAAAACCGTTGCCCACGTCCTCTTCCCGAACGAGATCAACAGTCTACGCGAACGTGCTGCCGCAGGTTTGATGCGTTTCTCGCCGCAGCTGGTTCAGGACCTCCGGGCAACGCGCTGGTGCCCCCGGGTGTATCTCAGGCACGAGTGGGCCAGTTCCGCGAGTACAGNNGAACTGTTCGAAACGTTCCTCGTGATGGAAAACGTGACACCGCGGGGGTTCCGTACTGGGCCGNGGNTAGATCTGGACGAGGCACATCTGACGCTGAGTGGTGGAGATTCAGTCGGCCGGTTATCACGCGTTGGCGTCGGTACGCGCTTGCGCAAGTCGAAGGAGGACGCCGGACCGGNGCTGGGAGCCGGGCNCGTGGGGCGCACGTTGNTGCCGGGTTAGAGANCGTTCGCNTGCGAGGGA]
[+] EMBL AGA281945            [                                                                                                                                                                                                                      CTGCACACACC GAAACATCTCGACGGGTTCATGTCCGCCATCCATCAATTGACACTGACCTTGCGCCACAGTGCAAGTGGGGAAACATCCACCGTTCCGC TGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCC GCAAGCAAAACC TTGCCCACGTCCTCTTCCCGAACGAGATCAACA TCTACGCAAACGTGCTGCCCCA GTTTGATGCATTTCTCGCCGAAGCTGGCTC GGAGCTGCGGGCAACGCGCTGGTGCCCCCGG                                                                                                                                                                                                                                                                                             ]


>consensus_6977#0 CCGGAGTTGTTGCAGCGTACATTTGTTTGTTAGCTTATCTCTTCAAACCCTAAACAGACA GTGATAAGTGAGAACTAATATATCGTTCATATCTGCCCAAACGAAGGATAGTCGCACGAT GGAGGCAAAAGTGAACTACATCAAAACACGGCTCGTGCAGCAGGTGCTGACCAGCCACGA AAGCTTCCGTGGGATGGAAGTCGTGCGCAGTGACCTGCACACACCGAAACATCTCGACGG GTTCATGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGAAAC ATCCACCGTTCCGCTGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCCGCAAGCAAAA CCTTGCCCACGTCCTCTTCCCGAACGAGATCAACATCTACGCGAACGTGCTGCCCCAGTT TGATGCGTTTCTCGCCGAAGCTGGCTCGGAGCTGCGGGCAACGCGCTGGTGCCCCCGGGT GTATCTCAGCACGATGGGCCAGTTCCGCGAGTACAGCGAACTGTTCGAAACGTTCCTCGT GATGGAAAACGTGACACCGCGGGGGTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGC ACATCTGACGCTGATGGTGGAGATCATCGCCCGCTATCACGCTTGGCTCGTACGCGCTGC GCATCTCGAAGGAGGACGCCGGACCGGNGCTGGGAGCCGGGCNCGTGGGGCGCACGTTGN TGCCGGGTTAGAGANCGTTCGCNTGCGAGGGA



consensusID : consensus_6977#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 668
fasta sequence
                              [CCGGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGAAACATCCACCGTTCCGCTGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCCGCAAGCAAAACCTTGCCCACGTCCTCTTCCCGAACGAGATCAACATCTACGCGAACGTGCTGCCGCAGTTTGATGCGTTTCTCGCCGCAGCTGGTTCGGACCTGCGGGCAACGCGCTGGTGCCCCCGGGTGTATCTCAGCACGATGGGCCAGTTCCGCGAGTACAGCGAACTGTTCGAAACGTTCCTCGTGATGGAAAACGTGACACCGCGGGGGTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGCACATCTGACGCTGATGGTGGAGATCATCGCCCGCTATCACGCTTGCTCGTACGCGCTGCGCATCAAAGACCCGCCCGCCCTGGACCGGCTCGTGGGGCGCATTGTGCCGTTGAACTTCCTGCAGGATGGGAAGGTATTTTTCGAAAGCTACGACGTAGTGTTCCGACTCGCAGCGGAGCGTCTGTTTGCGTACGTTGATGCGGTTCCTGCGGAGCTGGACAGTGAGCGGTTCCGGCAGCACGTGCACACCCTGCGCACCAAGTATGGGCCGAATCAGTCCGAGCTGATGCAGAAATTTCTGCACCGTGATC]

[+] EMBL BM577405             [CCGGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGAAACATCCACCGTTCCGCTGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCCGCAAGCAAAACCTTGCCCACGTCCTCTTCCCGAACGAGATCAACATCTACGCGAACGTGCTGCCGCAGTTTGATGCGTTTCTCGCCGCAGCTGGTTCGGACCTGCGGGCAACGCGCTGGTGCCCCCGGGTGTATCTCAGCACGATGGGCCAGTTCCGCGAGTACAGCGAACTGTTCGAAACGTTCCTCGTGATGGAAAACGTGACACCGCGGGGGTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGCACATCTGACGCTGATGGTGGAGATCATCGCCCGCTATCACGCTTGCTCGTACGCGCTGCGCATCAAAGACCCGCCCGCCCTGGACCGGCTCGTGGGGCGCATTGTGCCGTTGAACTTCCTGCAGGATGGGAAGGTATTTTTCGAAAGCTACGACGTAGTGTTCCGACTCGCAGCGGAGCGTCTGTTTGCGTACGTTGATGCGGTTCCTGCGGAGCTGGACAGTGAGCGGTTCCGGCAGCACGTGCACACCCTGCGCACCAAGTATGGGCCGAATCAGTCCGAGCTGATGCAGAAA                ]
[+] EMBL BM629315             [                              ccgGCGCCACAGTGCAAGTGGGGA   ATCCACCGTTCCGCTGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCCGCAAGCAAAACCTTGCCCACGTCCTCTTCCCGAACGAGATCAACATCTACGCGAACGTGCTGCCCCAGTTTGATGCGTTTCTCGCCGAAGCTGGCTCGGAGCTGCGGGCAACGCGCTGGTGCCCCCGGGTGTATCTCAGCACGATGGGCCAGTTCCGCGAGTACAGCGAACTGTTCGAAACGTTCCTCGTGATGGAAAACGTGACACCGCGAGGTTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGCACATCTGACGCTGATGGTGGAGATCATCGCCCGCTATCACGCTTGCTCGTACGCGCTGCGCATCAAAGACCCGCCCGCCCTGGACCGGCTCGTGGAGCGCATTGTGCCGTTGAACTTCCTGCAGGATGGGAAGGTATTTTTCGAAAGCTACGACGTAGTGTTCCGGCTCGCAGCGGAGCGTCTGTTTGCGTACGTTGATGCGGTTCCTGCGGAGCTGGACAGTGAGCGGTTCCGGCAGCACGTGCACACCCTGCGCACCAAGTATGGGCCGAATCAGTCCGAGCTGATGCAGAAATTTCTGCACCGTGATC]


>consensus_6977#1 CCGGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGAAACATC CACCGTTCCGCTGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCCGCAAGCAAAACCT TGCCCACGTCCTCTTCCCGAACGAGATCAACATCTACGCGAACGTGCTGCCGCAGTTTGA TGCGTTTCTCGCCGCAGCTGGTTCGGACCTGCGGGCAACGCGCTGGTGCCCCCGGGTGTA TCTCAGCACGATGGGCCAGTTCCGCGAGTACAGCGAACTGTTCGAAACGTTCCTCGTGAT GGAAAACGTGACACCGCGGGGGTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGCACA TCTGACGCTGATGGTGGAGATCATCGCCCGCTATCACGCTTGCTCGTACGCGCTGCGCAT CAAAGACCCGCCCGCCCTGGACCGGCTCGTGGGGCGCATTGTGCCGTTGAACTTCCTGCA GGATGGGAAGGTATTTTTCGAAAGCTACGACGTAGTGTTCCGACTCGCAGCGGAGCGTCT GTTTGCGTACGTTGATGCGGTTCCTGCGGAGCTGGACAGTGAGCGGTTCCGGCAGCACGT GCACACCCTGCGCACCAAGTATGGGCCGAATCAGTCCGAGCTGATGCAGAAATTTCTGCA CCGTGATC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6977#0      CCGGAGTTGTTGCAGCGTACATTTGTTTGTTAGCTTATCTCTTCAAACCCTAAACAGACA 60
consensus_6977#1      ------------------------------------------------------------
                                                                                  

consensus_6977#0      GTGATAAGTGAGAACTAATATATCGTTCATATCTGCCCAAACGAAGGATAGTCGCACGAT 120
consensus_6977#1      ------------------------------------------------------------
                                                                                  

consensus_6977#0      GGAGGCAAAAGTGAACTACATCAAAACACGGCTCGTGCAGCAGGTGCTGACCAGCCACGA 180
consensus_6977#1      ------------------------------------------------------------
                                                                                  

consensus_6977#0      AAGCTTCCGTGGGATGGAAGTCGTGCGCAGTGACCTGCACACACCGAAACATCTCGACGG 240
consensus_6977#1      ------------------------------------------------------------
                                                                                  

consensus_6977#0      GTTCATGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGAAAC 300
consensus_6977#1      ---CCGGTCCGCCATCCATCAATTGACGCTGACCTTGCGCCACAGTGCAAGTGGGGAAAC 57
                         *  ******************************************************

consensus_6977#0      ATCCACCGTTCCGCTGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCCGCAAGCAAAA 360
consensus_6977#1      ATCCACCGTTCCGCTGCTGGTGAAGGTGATGAAGGGGGACGAGCTGTTCCGCAAGCAAAA 117
                      ************************************************************

consensus_6977#0      CCTTGCCCACGTCCTCTTCCCGAACGAGATCAACATCTACGCGAACGTGCTGCCCCAGTT 420
consensus_6977#1      CCTTGCCCACGTCCTCTTCCCGAACGAGATCAACATCTACGCGAACGTGCTGCCGCAGTT 177
                      ****************************************************** *****

consensus_6977#0      TGATGCGTTTCTCGCCGAAGCTGGCTCGGAGCTGCGGGCAACGCGCTGGTGCCCCCGGGT 480
consensus_6977#1      TGATGCGTTTCTCGCCGCAGCTGGTTCGGACCTGCGGGCAACGCGCTGGTGCCCCCGGGT 237
                      ***************** ****** ***** *****************************

consensus_6977#0      GTATCTCAGCACGATGGGCCAGTTCCGCGAGTACAGCGAACTGTTCGAAACGTTCCTCGT 540
consensus_6977#1      GTATCTCAGCACGATGGGCCAGTTCCGCGAGTACAGCGAACTGTTCGAAACGTTCCTCGT 297
                      ************************************************************

consensus_6977#0      GATGGAAAACGTGACACCGCGGGGGTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGC 600
consensus_6977#1      GATGGAAAACGTGACACCGCGGGGGTTCCGTACTGGGCCGCGGCTAGATCTGGACGAGGC 357
                      ************************************************************

consensus_6977#0      ACATCTGACGCTGATGGTGGAGATCATCGCCCGCTATCACGCTTGGCTCGTACGCGCTGC 660
consensus_6977#1      ACATCTGACGCTGATGGTGGAGATCATCGCCCGCTATCACGCTTG-CTCGTACGCGCTGC 416
                      ********************************************* **************

consensus_6977#0      GCATCTCGAAGGAGGACGCC--GGACCGGNGCTGGGAGCCGGGCNCGTGGGGCGCACGTT 718
consensus_6977#1      GCATCAAAGACCCGCCCGCCCTGGACCGGCTCGTGGGGC--GCATTGTGCCGTTGAACTT 474
                      *****    *   *  ****  *******  *  ** **  *    ***  *   *  **

consensus_6977#0      GNTGCCGGGTTAGAGANCGTTCGCNTGCGAGGGA-------------------------- 752
consensus_6977#1      CCTGCAGGATGGGAAGGTATTT-TTCGAAAGCTACGACGTAGTGTTCCGACTCGCAGCGG 533
                        *** ** *  **     **     *  **  *                          

consensus_6977#0      ------------------------------------------------------------
consensus_6977#1      AGCGTCTGTTTGCGTACGTTGATGCGGTTCCTGCGGAGCTGGACAGTGAGCGGTTCCGGC 593
                                                                                  

consensus_6977#0      ------------------------------------------------------------
consensus_6977#1      AGCACGTGCACACCCTGCGCACCAAGTATGGGCCGAATCAGTCCGAGCTGATGCAGAAAT 653
                                                                                  

consensus_6977#0      ---------------
consensus_6977#1      TTCTGCACCGTGATC 668
                                     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)