These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6984#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1406 fasta sequence [TTCCTATCCAATTAAACAGCCACTGAAAACGACGAAATGTGCGTGCGTGTGATAATTGCTAAGTCACAGTCAAGCTAGAGCGGTAGGCAGTCAGGCAGACAGGCAAAAACTTCACTTCCATGGAGATGGTGCAGCAGTACGCGTGTTGAAGTGTTTGTACCGCACCGCATCGCACCGGTTTTTTGGAGGGTCGAGAAGCGTAGAAGATAACGGGCGCAAACACTGCATATTGAGGTGAGGCCTTATTGCATTAGCTTAGCTAGAGAGTAACAAAAAAAAACAAAATCTATCGATACGAAAACGCAAGCAGAGCACAGGTTACTACACTTCACCCTGCAATCTTGTTTAGTTTTTCTTCCCTTTTGTCCCGAACGGATACGTACCATACCGAAGGGCTTTGAGATAACGTTCCAAATCTATAAAGCAAACCCCGGTGCCGGTGAGTTAAGATATCGGTCAGTACTTTACTCGTAACGACCACCATCCGCTATTCCGGTCAGCAACTAAAACCCCGG-TTCACACCCGCCTCGCGTGGTCCATCCGTTTCGCTTGCGCGGTCAAGTGTTTTTAGTGGTCTAGTGGTGGAAATCCCTGGACAGTTCTTACCTATCGGTTACAGCCACCGTCTCAGATGGAGATTGTTATGTTTGTATG-TGTTTTACTTTTTTTATTTTATTTTTGGATTGTTTTATTGTAATTTTAAGCTCGTTTTAAAACCTCCAAACACCACTCCCTGTTGTGCACCATTGGAGACACAAAACAGACGACACGGAGATAAAGAGATAGATATAGAGAGAGAGAGAAACACACAAACGTTAGTACACATATTCAAAACAAAAGCCAATCATGGACTAGAGCTAGTGCCGCGTTGCTTTCAGAAAATAGTTATAAATACTTAGCGAACAAAACAGTAGTCGTCTCCCGGTTCCTTTCGTTTTTCGGGAGGACGACGATTTGGGCAATATTTAGCATTAGCACGAGTAATTAGAGCCATCGAATGCCGCCAATTGATGCAGTCTATACTGGACGTAGTAGCACCGGTAGCAGCAGCGATCCCTCAACTCCCTATACCCGTTGGTAGTTTTGTTGTTGAAGACGATTTGAATCACCGGAACTTGACATCCCCCAGACCCGTTAGTCTTCGTCTTAATTACAAATAAAAGTAAACCGAGAATTACTTCACTGCTGAATTACTTTATAGCATGATTTTCCCTTAATAGACCCTACTTCTAAGAATGACTCTTTTATGCTATCTTATTACGCCTCACTGACGTCACTACGTTGCCTTACACTGTTCGATTATTTTAAACTAGTTTAGGGAATTTTACGCCTATTGGTCATGTTATTCGACATTTGAAAAAAACACCCACAAACGTAAACACACGTTAATTNCCAGNTCCAATAAN] [+] EMBL BX627722 [TTCCTATCCAATTAAACAGCCACTGAAAACGACGAAATGTGCGTGCGTGTGATAATTGCTAAGTCACAGTCAAGCTAGAGCGGTAGGCAGTCAGGCAGACAGGCAAAAACTTCACTTCCATGGAGATGGTGCAGCAGTACGCGTGTTGAAGTGTTTGTACCGCACCGCATCGCACCGGTTTTTTGGAGGGTCGAGAAGCGTAGAAGATAACGGGCGCAAACACTGCATATTGAGGTGAGGCCTTATTGCATTAGCTTAGCTAGAGAGTAACAAAAAAAAACAAAATCTATCGATACGAAAACGCAAGCAGAGCACAGGTTACTACACTTCACCCTGCAATCTTGTTTAGTTTTTCTTCCCTTTTGTCCCGAACGGATACGTACCATACCGAAGGGCTTTGAGATAACGTTCCAAATCTATAAAGCAAACCCCGGTGCCGGTGAGTTAAGATATCGGTCAGTACTTTACTCGTAACGACCACCATCCGCTATTCCGGTCAGCAACTAAAACCCCGGTTTCACACCCGCCTCGCGTGGTCCATCCGTTTCGCTTGCGCGGTCAAGT ] [+] EMBL BX615050 [ ATAACGTTCCAAATCTATAAAGCAAACCCCGGTGCCGGTGAGTTAAGATATCGGACAGTACTTTACTCGTAACGACCACCATCCGCTATTCCGGTCAGCAACTAAAACCCCGG TTCACACCCGCCTCGCGTGGTCCATCCGTTTCGCTTGCGCGGTCAAGTGTTTTTAGTGGTCTAGTGGTGGAAATCCCTGGACAGTTCTTACCTATCGGTTACAGCCACCGTCTCAGATGGAGATTGTTATGTTTGTATG TGTTTTACTTTTTTTATTTTATTTTTGGATTGTTTTATTGTAATTTTAAGCTCGTTTTAAAACCTCCAAACACCACTCCCTGTTGTGCACCATTGGAGACACAAAACAGACGACACGGAGATAAAGAGATAGATATAGAGAGAGAGAGAAACACACAAACGTTAGTACACATATTCAAAACAAAAGCCAATCATGGACTAGAGCTAGTGCCGCGTTGCTTTCAGAAAATAGTTATAAATACTTAGCGAACAAAACAGTAGTCGTCTCCCGGTTCCTTTCGTTTTTCGGGAGGACGACGATTTGGGCAATATTTAGCATTAGCACGAGTAATTAGAGCCATCGAATGCCGCCAATTGATGCAGTCTATACTGGACGTAGTAGCACCGGTAGCAGCAGCGATCCCTCAACTCCCTATACCCGTTGGTAG ] [+] EMBL BX466668 [ cATGCTGCTTT TTGTTTAATTTTTTTTCTGGATTGTTTTATTGTAATTTTAAGCTCGTTTTAAAACCTCCAAACACCACTCCCTGTTGTGCACCATTGGAGACACAAAACAGACGACACGGAGATAAAGAGATAGATATAGAGAGAGAGAGAAACACACAAACGTTAGTACACATATTCAAAACAAAAGCCAATCATGGACTAGAGCTAGTGCCGCGTTGCTTTCAGAAAATAGTTATAAATACTTAGCGAACAAAACAGTAGTCGTCTCCCGGTTCCTTTCGTTTTTCGGGAGGACGACGATTTGGGCAATATTTAGCATTAGCACGAGTAATTAGAGCCATCGAATGCCGCCAATTGATGCAGTCTATACTGGACGTAGTAGCACCGGTAGCAGCAGCGATCCCTCAACTCCCTATACCCGTTGGTAGTTTTGTTGTTGAAGACGATTTGAATCACCGGAACTTGACATCCCCCAGACCCGTTAGTCTTCGTCTTAATTACAAATAAAAGTAAACCGAGAATTACTTCACTGCTGAATTACTTTATAGCATGATTTTCCCTTAATAGACCCTACTTCTAAGAATGACTCTTTTATGCTATCTTATTACGCCTCACTGACGTCACTACGTTGCCTTACACTGTTCGATTATTTTAAACTAGTTTAGGGAATTTTACGCCTATTGGTCATGTTATTCGACATTTGAAAAAAACACCCACAAACGTAAACACACGTTAATTNCCAGNTCCAATAAN] [-] EMBL BX619017 [ GTAGTAGCACCGGTAGCAGCAGCGATCCCTCAACTCCCTATACCCGTTGGTAGTTTTGTTGTTGAAGACGATTTGAATCACCGGAACTTGACATCCCCCAGACCCGTTAGTCTTCGTCTTAATTACAAATAAAAGTAAACCGAGAATTACT ] consensusID : consensus_6984#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence [ATTTGGATGGCNAGTTCTTATTACTGGGAACGGTAGGTAGCAACCGGGTAGGCAGCAAGGCGATCCCCTCAACTCNNCTATANCAGTTGGTAGTTTTTGNTGGGTTGAANGAACNGATTTTNGNAATTCACCCNGGGGAANCNTTNGNAACAATTCCCCCCCCCAGAAACCCCCGNNTTAGGTTNNTTCNGTNCGTGGGANTGACGGGGANTGGGGAGTNGANACCGAGAATTACTTCACTGCTGGAATTACTTTATAGCATGATTTTCCCTTAATAGACCCTACTTCTAAGAATGACTCTTTTATGCTATCTTATTACGCCTCACTGACGTCACTACGTTGCCTTACACTGTTCGATTATTTAAACTAGTTTAGGAATTTTACGCCTATTGGTCATGTTATTCGACATTTGAAAAAAACACACACAACGTAGACAACGTTGAATGTCCAGTATCCGAATAAGTAACTACCGCCTATCTAATACTGCGTCTAATATTTACAACCCCCGCCGTAAATGAGGTACCCCAATCGCCCGAAACTGTTCCTACAATTCCTCCAGATATTNCCCCCACGGATTTTTGTTGAGCTTCAAGCGCTCCGGTCCGC] [-] EMBL BX619638 [ATTTGGATGGCNAGTTCTTATTACTGGGAACGGTAGGTAGCAACCGGGTAGGCAGCAAGGCGATCCCCTCAACTCNNCTATANCAGTTGGTAGTTTTTGNTGGGTTGAANGAACNGATTTTNGNAATTCACCCNGGGGAANCNTTNGNAACAATTCCCCCCCCCAGAAACCCCCGNNTTAGGTTNNTTCNGTNCGTGGGANTGACGGGGANTGGGGAGTNGANACCGAGAATTACTTCACTGCTGGAATTACTTTATAGCATGATTTTCCCTTAATAGACCCTACTTCTAAGAATGACTCTTTTATGCTATCTTATTACGCCTCACTGACGTCACTACGTTGCCTTACACTGTTCGATTATTTAAACTAGTTTAGGAATTTTACGCCTATTGGTCATGTTATTCGACATTTGAAAAAAACACACACAACGTAGACAACGTTGAATGTCCAGTATCCGAATAAGTAACTACCGCCTATCTAATACTGCGTCTAATATTTACAACCCCCGCCGTAAATGAGGTACCCCAATCGCCCGAAACTGTTCCTACAATTCCTCCAGATATTNCCCCCACGGATTTTTGTTGAGCTTCAAGCGCTCCGGTCCGC] consensusID : consensus_6984#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [GCCCGAGGTTAGGCGTTGTTGTAGTGAACAAATACACGGTCCCACTGTTCGTCGTGATGGGCACCATCTGGACGGTGATGGCGGTGACGTACTACGCGACGTACGATCTGCCAATCTTCTACGACATACTGTTCGGCTTTCAGGGGCATCCTGATGTTCGTCATCTTCGTCTGCATGCCGCGCCCGTACGAAACGATCCGCCAGTGGCTCAACGAGCGGCGGTACTGCGCCTGGATGTGTCGGGTCGATCAGGTCGACGACGGTGAGGAGGCACCGATGAAGCGCCAGATGATCGCACCGATGATGGCGCGGGCGGCACCACGGGTGGCTTGCGTCCCGGACGCCGCCCAGTACAACGCCTACATGGGCGGACCGGAGCGCTTGAAGCTCAACAAAAATCCGTTTAAATATCTAGAGGAATTTTAGGAACTGTTTCGGGCGATTGGGGCACTTTACGGCGGGGTTTGTAAATATTAGACGCACGTATTAGATANGCGGTAGTTACTTATTCGGATACTGGACATTCAACGTTGTCTACGCTNTGTGTGTGTANATCAAATGTCGAATAACATGACCAATAGGTGTA] [+] EMBL AL697609 [GCCCGAGGTTAGGCGTTGTTGTAGTGAACAAATACACGGTCCCACTGTTCGTCGTGATGGGCACCATCTGGACGGTGATGGCGGTGACGTACTACGCGACGTACGATCTGCCAATCTTCTACGACATACTGTTCGGCTTTCAGGGGCATCCTGATGTTCGTCATCTTCGTCTGCATGCCGCGCCCGTACGAAACGATCCGCCAGTGGCTCAACGAGCGGCGGTACTGCGCCTGGATGTGTCGGGTCGATCAGGTCGACGACGGTGAGGAGGCACCGATGAAGCGCCAGATGATCGCACCGATGATGGCGCGGGCGGCACCACGGGTGGCTTGCGTCCCGGACGCCGCCCAGTACAACGCCTACATGGGCGGACCGGAGCGCTTGAAGCTCAACAAAAATCCGTTTAAATATCTAGAGGAATTTTAGGAACTGTTTCGGGCGATTGGGGCACTTTACGGCGGGGTTTGTAAATATTAGACGCACGTATTAGATANGCGGTAGTTACTTATTCGGATACTGGACATTCAACGTTGTCTACGCTNTGTGTGTGTANATCAAATGTCGAATAACATGACCAATAGGTGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6984#0 TTCCTATCCAATTAAACAGCCACTGAAAACGACGAAATGTGCGTGCGTGTGATAATTGCT 60 consensus_6984#1 ------------------------------------------------------------ consensus_6984#2 ------------------------------------------------------------ consensus_6984#0 AAGTCACAGTCAAGCTAGAGCGGTAGGCAGTCAGGCAGACAGGCAAAAACTTCACTTCCA 120 consensus_6984#1 ------------------------------------------------------------ consensus_6984#2 ------------------------------------------------------------ consensus_6984#0 TGGAGATGGTGCAGCAGTACGCGTGTTGAAGTGTTTGTACCGCACCGCATCGCACCGGTT 180 consensus_6984#1 ------------------------------------------------------------ consensus_6984#2 ------------------------------------------------------------ consensus_6984#0 TTTTGGAGGGTCGAGAAGCGTAGAAGATAACGGGCGCAAACACTGCATATTGAGGTGAGG 240 consensus_6984#1 ------------------------------------------------------------ consensus_6984#2 ------------------------------------------------------------ consensus_6984#0 CCTTATTGCATTAGCTTAGCTAGAGAGTAACAAAAAAAAACAAAATCTATCGATACGAAA 300 consensus_6984#1 ------------------------------------------------------------ consensus_6984#2 ------------------------------------------------------------ consensus_6984#0 ACGCAAGCAGAGCACAGGTTACTACACTTCACCCTGCAATCTTGTTTAGTTTTTCTTCCC 360 consensus_6984#1 ------------------------------------------------------------ consensus_6984#2 ------------------------------------------------------------ consensus_6984#0 TTTTGTCCCGAACGGATACGTACCATACCGAAGGGCTTTGAGATAACGTTCCAAATCTAT 420 consensus_6984#1 ------------------------------------------------------------ consensus_6984#2 ------------------------------------------------------------ consensus_6984#0 AAAGCAAACCCCGGTGCCGGTGAGTTAAGATATCGGTCAGTACTTTACTCGTAACGACCA 480 consensus_6984#1 ------------------------------------------------------------ consensus_6984#2 ------------------------------------------------------------ consensus_6984#0 CCATCCGCTATTCCGGTCAGCAACTAAAACCCCGGTTCACACCCGCCTCGCGTGGTCCAT 540 consensus_6984#1 ------------------------------------------------------------ consensus_6984#2 ------------------------------------------------------------ consensus_6984#0 CCGTTTCGCTTGCGCGGTCAAGTGTTTTTAGTGGTCTAGTGGTGGAAATCCCTGGACAGT 600 consensus_6984#1 ------------------------------------------------------------ consensus_6984#2 ------------------------------------------------------------ consensus_6984#0 TCTTACCTATCGGTTACAGCCACCGTCTCAGATGGAGATTGTTATGTTTGTATGTGTTTT 660 consensus_6984#1 ------------------------------------------------------------ consensus_6984#2 ------------------------------------------------------------ consensus_6984#0 ACTTTTTTTATTTTATTTTTGGATTGTTTTATTGTAATTTTAAGCTCGTTTTAAAACCTC 720 consensus_6984#1 ------------------------------------------------------------ consensus_6984#2 ------------------------------------------------------------ consensus_6984#0 CAAACACCACTCCCTGTTGTGCACCATTGGAGACACAAAACAGACGACACGGAGATAAAG 780 consensus_6984#1 ------------------------------------------------------------ consensus_6984#2 ------------------------------------------------------------ consensus_6984#0 AGATAGATATAGAGAGAGAGAGAAACACACAAACGTTAGTACACATATTCAAAACAAAAG 840 consensus_6984#1 ------------------------------------------------------------ consensus_6984#2 ------------------------------------------------------------ consensus_6984#0 CCAATCATGGACTAGAGCTAGTGCCGCGTTGCTTTCAGAAAATAGTTATAAATACTTAGC 900 consensus_6984#1 ------------------------------------------------------------ consensus_6984#2 ------------------------------------------------------------ consensus_6984#0 GAACAAAACAGTAGTCGTCTCCCGGTTCCTTTCGTTTTTCGGGAGGACGACGATTTGG-G 959 consensus_6984#1 ------------------------------------------------ATTTGGATGG-C 11 consensus_6984#2 ------GCCCGAGGTTAGGCGTTGTTGTAGTGAACAAATACACGGTCCCACTGTTCGTCG 54 * consensus_6984#0 CAATATTTAGCATTAGCACGAGTA-ATTAGAGCCATCGAATGCCGCCAATTGATGCAGTC 1018 consensus_6984#1 NAGTTCTTATTACTGGGAACGGTA-GGTAGCAACCGGGTAGGCAGCAAGGCGATCCCCTC 70 consensus_6984#2 TGATGGGCACCATCTGGACGGTGATGGCGGTGACGTACTACGCGACGTA-CGAT-CTGCC 112 * * * * * * * * * ** * *** * * consensus_6984#0 TATACTGGACGTAGTAGC-ACCGGTAGCAGCAGCGATCCCTCAACTCCCTATACCCGTTG 1077 consensus_6984#1 AACTCNNC-TATANCAGTTGGTAGTTTTTGNTGGGTTGAANGAACNGATTTTNGNAATTC 129 consensus_6984#2 AATCTTCTACGACATACTGTTCGGCTTTCAGGGGCATCCTGATGTTCGTCATCTTCGTCT 172 * * * * * * * consensus_6984#0 GT--AGTTTTGTTGTTGAAGACGATTTGAA-----TCACCGGAA---CTTGACATCCCCC 1127 consensus_6984#1 ACCCNGGGGAANCNTTNGNAACAATTCCCC-----CCCCCAGAAACCCCCGNNTTAGGTT 184 consensus_6984#2 GCATGCCGCGCCCGTACGAAACGATCCGCCAGTGGCTCAACGAGCGGCGGTACTGCGCCT 232 * ** ** ** * consensus_6984#0 AGACCCGTTAG-TCTTCGTCTTAATTACAAATAAAAGTAAACCGA-GAATTACTTCACTG 1185 consensus_6984#1 NNTTCNGTNCG-TGGGANTGACGGGGANTGGGGAGTNGANACCGA-GAATTACTTCACTG 242 consensus_6984#2 GGATGTGTCGGGTCGATCAGGTCGACGACGGTGAGGAGGCACCGATGAAGCGCCAGATGA 292 ** * * * ***** *** * * consensus_6984#0 CTG-AATTACTTTATAGCATGATTTTCCCTTAATAGACCCTACTTCTAAGAATGACTCTT 1244 consensus_6984#1 CTGGAATTACTTTATAGCATGATTTTCCCTTAATAGACCCTACTTCTAAGAATGACTCTT 302 consensus_6984#2 TCGCACCGA--TGATGGCGCGGGCGGCACCACGGGTGGCTTGCGTCCCGGACGCCGCCCA 350 * * * * ** ** * * * * * * ** ** * consensus_6984#0 TTATGCTATCTTATTACGCCTCACTGACGTCACTACGTTGCCTTACA--CTGTTCGATTA 1302 consensus_6984#1 TTATGCTATCTTATTACGCCTCACTGACGTCACTACGTTGCCTTACA--CTGTTCGATTA 360 consensus_6984#2 GTACAACGCCTACATGGGCGGACCGGAGCGCTTGAAGCTCAACAAAAATCCGTTTAAATA 410 ** ** * ** * ** * * * * * * * *** * ** consensus_6984#0 TTTTAAACTAGTTTAGGGA--ATTTTACGCCTATTGGTCATGTTATT-CGACATTTGAAA 1359 consensus_6984#1 TTT-AAACTAGTTTAGG-A--ATTTTACGCCTATTGGTCATGTTATT-CGACATTTGAAA 415 consensus_6984#2 TCTAGAGGAATTTTAGGAACTGTTTCGGGCGATTGGGGCACTTTACGGCGGGGTTTGTAA 470 * * * * ****** * *** ** * ** ** *** ** **** ** consensus_6984#0 AAAACACCCACAAACGT-AAACACACGTT-AATTNCCAGNTCC--AATAAN--------- 1406 consensus_6984#1 AAAACACACACAA-CGT-AGACA-ACGTTGAATGTCCAGTATCCGAATAAGTAACTACCG 472 consensus_6984#2 ATATTAGACGCACGTATTAGATANGCGGTAGTTACTTATTCGGATACTGGACATTCAACG 530 * * * * ** * * * * ** * * * * * consensus_6984#0 ------------------------------------------------------------ consensus_6984#1 CCTATCTAATACTGCGTCTAATATTTACAACCCCCGCCGTAAATGAGGTACCCCAATCGC 532 consensus_6984#2 TTGTCTACGCTNTGTGTGTGTANATCAAATGTCGAATAACATGACCAATAGGTGTA---- 586 consensus_6984#0 ------------------------------------------------------------ consensus_6984#1 CCGAAACTGTTCCTACAATTCCTCCAGATATTNCCCCCACGGATTTTTGTTGAGCTTCAA 592 consensus_6984#2 ------------------------------------------------------------ consensus_6984#0 -------------- consensus_6984#1 GCGCTCCGGTCCGC 606 consensus_6984#2 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||