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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6987#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1333 fasta sequence
[CCGCCCACGCGTCCGGACGACACATTGAAGTTAGATTAGTTAAGTAAATATTCCCTGATCGTCACGAACTTTTACCATCTCTCTATTATTAGTTGGTGTATGTGTGCGTATTTTCTCTGTAAATCTCCCACCCCGGTGGCAAAGTGAAATACTTATCGTTTACGGTGTATCAGCGGTGTTTTGAAATCTGTAAGCAGAGCTTCCCGGTTTTTGCCCCTGGCGTACGAAACACGATATCAAACGGATTGAAACGGCCCTAACCCAGTTGAAAGGATTCAAAAACGAGAACGCGCGCTCGCCACATTTTTCTGCCCTCGCTTATAAACGCGCACATCGAAGCAAGCGATAGGAGCCCAGAAGAAGGTGTACCGCCATCATCGTCATCCATTTTCGAGCGGGGGAATCAACGCGAAACACGACCCCAAAGTCGGGAGAG-AAAAAAGGATATACACACACGTAAACAGCAGCCAGCTGGGAAGAAAATTAGTAGCCACTCGCAAGTACCGGCGGGTTCTGTGAAATAATTTTAATTAAATTCACTTCACGTCGTGCCGACCGAAGAGGGGCCTCTCTCTGTTACACACCAGCAGAACAGTTTGGCGCGTACACTAAACCTTCAATTAGTTCGCCACTGGCAGAC----GGGAAGTGGTAGTATCCTTTTACTGTTAAACCCCTAACCGTCCGGAAAAGGGTAAGGGACGCTGTTTGCTATTACCCC-AACGGAACCCCCGGAAACCGTCCGGATGATATTTCAGTGAGCGTGCCGTAGTGTGGATAGATATACTGTGGCTACTTGGATCGTGGTACGGGAAAGATTACACCTTCCGCTTTGATTTATCCCCACCCCTGCGTGTCATGATGGAATCGAAAGCTCTACTCCTAGCCACACTTTGCCTGCTCGCCGCCTGCCTGGCAGTGTCGGGCGCTAACGACACGGACCGACCCAACCGGCGGTACAAGCGCAAGTACGGCATGTGTCCGCCCAAGTTCACTAGCATCAGCAACGAGTGCTACTACATATCCCCGAACAAGCTGAACT-GGCTCGATGCGTACTTTGAGTGTAAGGACCACAACAGCAAGCTGGCGGAACCGATGATGTACGAGGACAAGGTGCTCCGGCGGACTCTGCAGAAAATGGGCTTGCGAGAGGACCTCTGGATCGGTGGCAACTACAACTGGAAGCTGAAGAAATGGCAGTGGGGCCACAATGGGCGGGAAATCGAGTACCAATCGTTCAGCCAAATGGTGCCTAGGAGCAGCCAGGATTTGACCTTCCACTGTGCACTGCTTAAAGCCGACATCAAGTTTAGATGGTCGGCCGCAGCGTGCACAG]
[+] EMBL BM625523 [CCGCCCACGCGTCCGGACGACACATTGAAGTTAGATTAGTTAAGTAAATATTCCCTGATCGTCACGAACTTTTACCATCTCTCTATTATTAGTTGGTGTATGTGTGCGTATTTTCTCTGTAAATCTCCCACCCCGGTGGCAAAGTGAAATACTTATCGTTTACGGTGTATCAGCGGTGTTTTGAAATCTGTAAGCAGAGCTTCCCGGTTTTTGCCCCTGGCGTACGAAACACGATATCAAACGGATTGAAACGGCCCTAACCCAGTTGAAAGGATTCAAAAACGAGAACGCGCGCTCGCCACATTTTTCTGCCCTCGCTTATAAACGCGCACATCGAAGCAAGCGATAGGAGCCCAGAAGAAGGTGTACCGCCATCATCGTCATCCATTTTCGAGCGGGGGAATCAACGCGAAACACGACCCCAAAGTCGGGAGAG AAAAAAGGATATACACACACGTAAACAGCAGCCAGCTGGGAAGAAAATTAGTAGCCACTCGCAAGTACCGGCGGGTTCTGTGAAATAATTTTAATTAAATTCACTTCACGTCGTGCCGACCGAAGAGGGGCCTCTCTCTGTTACACACCAGCAGAACAGTTTGGCGCGTACACTAAACCTTCAATTAGTTCGCCACTGGCAGACGACGGGGGTGTGATAGTATCCTTTTACTGGTAAACC ]
[+] EMBL BM582687 [ ccgAGAAGGTGTACCGCCATCATCGTCATCCATTTTCGAGCGGGGGAATCAACGCGAAACACGACCCCAAAGTCGGGAGAGAAAAAAAGGATATACACACACGTAAACAGCAGCCAGCTGGGAAGAAAATTAGTAGCCACTCGCAAGTACCGGCGGGTTCTGTGAAATAATTTTAATTAAATTCACTTCACGTCGTGCCGACCGAAGAGGGGCCTCTCTCTGTTACACACCAGCAGAACAGTTTGGCGCGTACACTAAACCTTCAATTAGTTCGCCACTGGCAGAC GGGAAGTGGTAGTATCCTTTTACTGTTAAACCCCTAACCGTCCGGAAAAGGGTAAGGGACGCTGTTTGCTATTACCCC AACGGAACCCCCGGAAACCGTCCGGATGATATTTCAGTGAGCGTGCCGTAGTGTGGATAGATATACTGTGGCTACTTGGATCGTGGTACGGGAAAGATTACACCTTCCGCTTTGATTTATCCCCACCCCTGCGTGTCATGATGGAATCGAAAGCTCTACTCCTAGCCACACTTTGCCTGCTCGCCGCCTGCCTGGCAGTGTCGGGCGCTAACGACACGGACCGACCCAACCGGCGGTACAAGCGCAAGTACGGCATGTGTCCGCCCAAGTTCACTAGCATCAGCAACGAGTGCTACTACATATCCCCGAACAAGCTGAACTGGGCTCGATGCGTACTTTGA ]
[+] EMBL BM589901 [ ccgATTTTAATTAAATTCACTTCACGTCGTGCCGACCGAAGAGGGGCCTCTCTCTGTTACACACCAGCAGAACAGTTTGGCGCGTACACTAAACCTTCAATTAGTTCGCCACTGGCAGAC GGGAAGTGGTAGTATCCTTTTACTGTTAAACCCCTAACCGTCCGGAAAAGGGTAAGGGACGCTGTTTGCTATTACCCC AACGGAACCCCCGGAAACCGTCCGGATGATATTTCAGTGAGCGTGCCGTAGTGTGGATAGATATACTGTGGCTACTTGGATCGTGGTACGGGAAAGATTACACCTTCCGCTTTGATTTATCCCCACCCCTGCGTGTCATGATGGAATCGAAAGCTCTACTCCTAGCCACACTTTGCCTGCTCGCCGCCTGCCTGGCAGTGTCGGGCGCTAACGACACGGACCGACCCAACCGGCGGTACAAGCGCAAGTACGGCATGTGTCCGCCCAAGTTCACTAGCATCAGCAACGAGTGCTACTACATATCCCCGAACAAGCTGAACT GGCTCGATGCGTACTTTGAGTGTAAGGACCACAACAGCAAGCTGGCGGAACCGATGATGTACGAGGACAAGGTGCTCCGGCGGACTCTGCAGAAAATGGGCTTGC ]
[+] EMBL BM633007 [ ccgGCTGTTTGCAATTACCCCAAACGGAACCCCCGGACACCGTCCGGATGATATTTCAGTGAGCGTGCCATAGTGTGGATAG ATACGGTGGCTACTTGGATCGTGGTACGGGAAAGATTACACCTTCGGCTTTGATTTATCCCCACCCCTGCGTGTCATGATGGAATCGAAAGCTCTACTCCTAGCCACACTTTGCCTGCTCGCCGCCTGCCTGGCAGTGTCGGGCGCCAACGACACGGACCAGCCGAACCGGCGGTACAAGCGCAAGTACGGCATGTGTCCGCCCAAGTTCACTAGCATCAGCAACGAGTGCTACTACATATCGCCCAACAAGCTGAACT GGCTCGATGCGTACTTTGAGTGTAAGGACCACAACAGCAAGCTGGCGGAACCGATGATGTACGAGGACAAGGTGCTCCGGCGAACTCTGCAGAAAATGGGCCTGCGAGAGGACCTCTGGATCGGTGGCAACTACAACTGGAAGCTGAAGAAATGGCAGTGGGGCCACAATGGGCGGGAAATCGAGTACCAATCGTTCAGCCAAATGGTGCCTAGGAGCAGCCAGGATTTGACCTTCCACTGTGCACTGCTTAAAGCCGACATCAAGTTTAGATGGTCGGCCGCAGCGTGCACAG]
consensusID : consensus_6987#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCAGCGTCAAGCGCGTGATGCAATCGAATCCCTCGATCCGGCCTGCCCATCGGCGCCGAGCAAATCGTCCGAAGAAGCCTGTCGCCGCTCCGACCGCCGCCGACCGGCGCACCTACATCCCGCCGGAAGTGGTCGGCCGCAAGCAGCATCTCGCGCAGTACGCTCCGGACGCGTCGAACGACATCAACACGATCGATAACGGACACCGAAACGGTGGTGGTGGTGGCGGGTTGGGGAGGTTCCTATCATTCCGCCGCACGCTTCAACGTAGACTTTAGCCCGCGCAATGGCAGGACGCGTGAACCAAGCTTCCCGCGCGGTCACCGAATGCGCACCGGAGAGGAGCATCGCCTGCCGCATCAGCACCGTCACCAGCCGGGTGCGCACAAGCCAACCAAGAGGACGCAGCAGTACTATGTGCCAGCGTATCCGCCAACTACTACTACCAGTGCTGCACCGCCTACTACCACCACAACGACTACCAGCACTACTACTACTACCACCACAACACCGCCACCACCAACAACAAGACCAACCGCAGCACGACTACCATCCGCACAACACAACACCCGATACACGAACCGCTCGATGACGTCGCAGGAAAAGCAAGCGAGCCGCGATTTTCTGCGCAAACGGCTGCAGAAGCTGACGCC]
[+] EMBL BM649000 [CCGCCCACGCGTCCGCCCACGCGTCCGCAGCGTCAAGCGCGTGATGCAATCGAATCCCTCGATCCGGCCTGCCCATCGGCGCCGAGCAAATCGTCCGAAGAAGCCTGTCGCCGCTCCGACCGCCGCCGACCGGCGCACCTACATCCCGCCGGAAGTGGTCGGCCGCAAGCAGCATCTCGCGCAGTACGCTCCGGACGCGTCGAACGACATCAACACGATCGATAACGGACACCGAAACGGTGGTGGTGGTGGCGGGTTGGGGAGGTTCCTATCATTCCGCCGCACGCTTCAACGTAGACTTTAGCCCGCGCAATGGCAGGACGCGTGAACCAAGCTTCCCGCGCGGTCACCGAATGCGCACCGGAGAGGAGCATCGCCTGCCGCATCAGCACCGTCACCAGCCGGGTGCGCACAAGCCAACCAAGAGGACGCAGCAGTACTATGTGCCAGCGTATCCGCCAACTACTACTACCAGTGCTGCACCGCCTACTACCACCACAACGACTACCAGCACTACTACTACTACCACCACAACACCGCCACCACCAACAACAAGACCAACCGCAGCACGACTACCATCCGCACAACACAACACCCGATACACGAACCGCTCGATGACGTCGCAGGAAAAGCAAGCGAGCCGCGATTTTCTGCGCAAACGGCTGCAGAAGCTGACGCC]
consensusID : consensus_6987#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGTGCCTAGGAGCAGCCAGGATTTGACCTTCCACTGGGGACTGCTTAAAGCCGACATCAAGTTTAGATGGTCGGCCGCAGCGTGCACAGACAAAATGAACTACATCTGCCAGCACCGAATGCCGCTCGTGTCCGAGATGGGCCGCAGCCTGGTGTACGAAAAGTGGAACAAAACCTACCCGAACGAGCGGGCCAACGAGAAGCTGGTGTACATCGTGAGCGAAGGCAACAACCGTACGCAAAGCGAGTACGGGGGGGCGCGCCTGTACAACAGCGTCAAGCGCGTGATGCAATCGAATCCCTCGATCCGGCCTGCCCATCGGCGCCGAGCAAATCGTCCGAAGAAGCCTGTCGCCGCTCCGACCGCCGCCGACCGGCGCACCTACATCCCGCCGGAAGTGGTCGGCCGCAAGCAGCATCTCGCGCAGTACGCTCCGGACGCGTCGAACGACAT]
[+] EMBL BM589079 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGTGCCTAGGAGCAGCCAGGATTTGACCTTCCACTGGGGACTGCTTAAAGCCGACATCAAGTTTAGATGGTCGGCCGCAGCGTGCACAGACAAAATGAACTACATCTGCCAGCACCGAATGCCGCTCGTGTCCGAGATGGGCCGCAGCCTGGTGTACGAAAAGTGGAACAAAACCTACCCGAACGAGCGGGCCAACGAGAAGCTGGTGTACATCGTGAGCGAAGGCAACAACCGTACGCAAAGCGAGTACGGGGGGGCGCGCCTGTACAACAGCGTCAAGCGCGTGATGCAATCGAATCCCTCGATCCGGCCTGCCCATCGGCGCCGAGCAAATCGTCCGAAGAAGCCTGTCGCCGCTCCGACCGCCGCCGACCGGCGCACCTACATCCCGCCGGAAGTGGTCGGCCGCAAGCAGCATCTCGCGCAGTACGCTCCGGACGCGTCGAACGACAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6987#1 ------------------------------------------------------------
consensus_6987#2 ------------------------------------------------------------
consensus_6987#0 CCGCCCACGCGTCCGGACGACACATTGAAGTTAGATTAGTTAAGTAAATATTCCCTGATC 60
consensus_6987#1 ------------------------------------------------------------
consensus_6987#2 ------------------------------------------------------------
consensus_6987#0 GTCACGAACTTTTACCATCTCTCTATTATTAGTTGGTGTATGTGTGCGTATTTTCTCTGT 120
consensus_6987#1 ------------------------------------------------------------
consensus_6987#2 ------------------------------------------------------------
consensus_6987#0 AAATCTCCCACCCCGGTGGCAAAGTGAAATACTTATCGTTTACGGTGTATCAGCGGTGTT 180
consensus_6987#1 ------------------------------------------------------------
consensus_6987#2 ------------------------------------------------------------
consensus_6987#0 TTGAAATCTGTAAGCAGAGCTTCCCGGTTTTTGCCCCTGGCGTACGAAACACGATATCAA 240
consensus_6987#1 ------------------------------------------------------------
consensus_6987#2 ------------------------------------------------------------
consensus_6987#0 ACGGATTGAAACGGCCCTAACCCAGTTGAAAGGATTCAAAAACGAGAACGCGCGCTCGCC 300
consensus_6987#1 ------------------------------------------------------------
consensus_6987#2 ------------------------------------------------------------
consensus_6987#0 ACATTTTTCTGCCCTCGCTTATAAACGCGCACATCGAAGCAAGCGATAGGAGCCCAGAAG 360
consensus_6987#1 ------------------------------------------------------------
consensus_6987#2 ------------------------------------------------------------
consensus_6987#0 AAGGTGTACCGCCATCATCGTCATCCATTTTCGAGCGGGGGAATCAACGCGAAACACGAC 420
consensus_6987#1 ------------------------------------------------------------
consensus_6987#2 ------------------------------------------------------------
consensus_6987#0 CCCAAAGTCGGGAGAGAAAAAAGGATATACACACACGTAAACAGCAGCCAGCTGGGAAGA 480
consensus_6987#1 --------------------CCGCCCACGCGTCCGCCCACGCGTCCGC---AGCGTCAA- 36
consensus_6987#2 --------------------CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGC 40
consensus_6987#0 AAATTAGTAGCCACTCGCAAGTACCGGCGGGTTCTGTGAAATAATTTTAATTAAATTCAC 540
** ** ** * * *
consensus_6987#1 --GCGCGT---GATG-CAATCGAATC-CCTCGATCCGGCCTGCCCATC-GGCGCCGAGCA 88
consensus_6987#2 CCACGCGTCCGGGTG-CCTAGGAGCAGCCAGGATTTGACCTTCCACTG-GGGACTGCTTA 98
consensus_6987#0 T-TCACGTCGTGCCGACCGAAGAGGGGCCTCTCTCTGTTACACACCAGCAGAACAGTTTG 599
* *** * * * ** ** * * * * * *
consensus_6987#1 AATCGTCCGAAGAA--GCCTGTCG--CCGCTCCGACCGCCGCCGACCGGCGCACCTACAT 144
consensus_6987#2 AAGCCGACATCAAG--TTTAGATGGTCGGCCGCAGCGTGCACAGACAAAATGAACTACAT 156
consensus_6987#0 GCGCGTACACTAAACCTTCAATTAGTTCGCCACTG-GCAGACGGGAAGTGGTAGTATCCT 658
* * * ** * * * * * *
consensus_6987#1 CCCGCCG--GAAGTG---GTCGGCCGCAAGCAGC-ATCTCGCGCAGTACGCTCCG-GACG 197
consensus_6987#2 CT-GCCA--GCACCGAATGCCGCTCGTGTCCGAG-ATGGGCCGCAGCCTGGTGTACGAAA 212
consensus_6987#0 TTTACTGTTAAACCCCTAACCGTCCGGAAAAGGGTAAGGGACGCTGTTTGCTATTACCCC 718
* * ** ** * *** * * *
consensus_6987#1 CGTCGAAC----GACATCAACACGATCGATAAC--GGACACCGAAACGGTGGTGGTGGTG 251
consensus_6987#2 AGTGGAAC----AAAACCTACCCGAACGAGCG---GGCCAACGAGAAGCTGGTGTACATC 265
consensus_6987#0 AACGGAACCCCCGGAAACCGTCCGGATGATATTTCAGTGAGCGTGCCG-TAGTGTGGATA 777
**** * * ** ** * * ** * * *** *
consensus_6987#1 G-CGGGTTGGGGAGGTTCCTATCATTCCGCCG-CACGCTTCAACGTAGACTTTAGCCCGC 309
consensus_6987#2 G-TGAGC---GAAGGCAACAACCGTAC-GCAA-AGCGAGT--ACGGGGGGGCGCGCCTGT 317
consensus_6987#0 GATATACTGTGGCTACTTGGATCGTGGTACGGGAAAGATTACACCTTCCGCTTTGATTTA 837
* * * * * * * * ** *
consensus_6987#1 GCAATGGCA--GGACG-CGTGAACCAAGCTTCCCGCGCGGTCACCGAATGCGCACCGGAG 366
consensus_6987#2 ACAACAGCGTCAAGCG-CGTGATGCAATCGAATCCCTCGATC-CGGCCTGCCCATCGGCG 375
consensus_6987#0 TCCCCACCCCTGCGTGTCATGATGGAATCGAAAGCTCTACTCCTAGCC-ACACTTTGCCT 896
* * * * *** ** * ** * * * *
consensus_6987#1 AGGAGCATCGCCTGCCGCATCAGCA-CCGTCACCAGCCGGGTGCGCACAAGCCAACCAAG 425
consensus_6987#2 CCGAGCAAATCGT-CCGAAGAAGC--CTGTCGCCGCTCCGAC-CGCC---GCCGACC--- 425
consensus_6987#0 GCTCGCCGCCTGCCTGGCAGTGTCGGGCGCTAACGACACGGACCGACCCAACCGGCGGTA 956
** * * * * * * ** ** *
consensus_6987#1 AGGACGCA-GCAGTACTATGTGCCAGCGTATCCGCCAACTACTACTACC-AGTGCTGCAC 483
consensus_6987#2 --GGCGCA-CC--TACATCCCGCCGGA--AGTGGTCGGCCGCAAGCAGC-A-TCTCGCGC 476
consensus_6987#0 CAAGCGCAAGTACGGCATGTGTCCGCCCAAGTTCACTAGCATCAGCAACGAGTGCTACTA 1016
**** * ** * * * * * * * *
consensus_6987#1 CGCCTACTACCACCACAACGACTACCAGCACTACTACTACTACCACCACAACACCGCCAC 543
consensus_6987#2 AGTACGCTCCGGACGCGTCGAACGACAT-------------------------------- 504
consensus_6987#0 CATAT-CCCCGAACAAGCTGAACTGGCTCGATGCGTACTTTGAGTGTAAGGACCACAACA 1075
* * * **
consensus_6987#1 CACCAACAACAAGACCAACCGCAGCACGACTACCATCCGCACAACACAACACCCGATACA 603
consensus_6987#2 ------------------------------------------------------------
consensus_6987#0 GCAAGCTGGCGGAACCGATGATGTACGAGGACAAGGTGCTCCGGCGGACTCTGCAGAAAA 1135
consensus_6987#1 CGAACCGCTCGATGACGTCGCAGGAAAAGCAAGCGAGCCGCGATTTTCTGCGCAAACGGC 663
consensus_6987#2 ------------------------------------------------------------
consensus_6987#0 TGGGCTTGCGAGAGGACCTCTGGATCGGTGGCAACTACAACTGGAAGCTGAAGAAATGGC 1195
consensus_6987#1 TGCAGAAGCTGACGCC-------------------------------------------- 679
consensus_6987#2 ------------------------------------------------------------
consensus_6987#0 AGTGGGGCCACAATGGGCGGGAAATCGAGTACCAATCGTTCAGCCAAATGGTGCCTAGGA 1255
consensus_6987#1 ------------------------------------------------------------
consensus_6987#2 ------------------------------------------------------------
consensus_6987#0 GCAGCCAGGATTTGACCTTCCACTGTGCACTGCTTAAAGCCGACATCAAGTTTAGATGGT 1315
consensus_6987#1 ------------------
consensus_6987#2 ------------------
consensus_6987#0 CGGCCGCAGCGTGCACAG 1333
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||