These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6988#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1627 fasta sequence [CCGGAGAGAATGAGGAACCTGCTGCTACTCATCGAAAACCTTTTAAGCAACTTTTGTGCCCGATGAGTAGAAGCGACAAAACGCAAGGGGCATCGATGGGGGAAAAATGCGGTGCGTATTGTTGCCTTTGCGCTCGCATTAGTAGACATATTGATATTTTTGTAACATAGTATCTTTTTCTTTTTAATTGACGTCGTTTCTGCGGCGCTGCCACATGCCACACGCTCGCAGGCCACCACCACACCACCCCTCCCTGATAGGAGCGGGGGTTTTGGGTGCGGCAGCAGATATAGTAGAGCGCAATGCGCTGGGGGTCCGCGCGATTGCAACACGTGTAAAAGTAATTTATTTTCTACGACTTACTAGAAAAAACTAAACGGAACGATATATAGAGCTTTTTGGGGGACGCGTGGAAGAGCGGGCGAGAGTTTTGCATGCACACTTAAAGGGTACTGTGCACCTCCGCCCTCTTCCCCTTCCCAAACGTAGAAGGACAGAAGGAACAAGAGAGAGAGAAAGAGAGGCAAAGAGAATACCATTTAATACAATGCGCGCTGTAAAATACGTTGCCGAAACGAAGCAGCGGTTCAGAAAGTCTGATTTGAGGTAAATCCTACCTACTACCTACTACGCGGATACGGGAGCCATATAGGAAAGCGGTTCCCTCTTTGCGGGAGCATGATGTGCCCGCGTTTCCTCACTCTCTGTCAATCCTCTTTGCATTGAGAGGAGATGACGATGACGATGATGATGATGCACTTTCGGGATCGCGTCGAAAGTGCATTGTTGGCGATCGGTGTTGCACCGTGTGCAGAGCGCGCCGCATTCAGTTTAAGCTTTAACAAAAGAAGAGGAGGAAGAAAAAAGGGTGAAGATGCAGTGGAGATCAGCCTACGGCCAAGGCATAAAAAAATACGCCAGTGATGAATTCGGGGGCAGGGCTCGTCGGAAGCGTGCACTCTCGGCACCCCGCGTAGGACACTGGATCTGGCATTTGTGGTCTTGTTTTTTTTTTTTTTGTATTGCCAGTCCACCGAGGAAGCACACCGAGAGACGTTGTTGCCGTGTCCGGGGAGCCAGCCGCCCTATGTACATGATGATGATGTTTTACAACAAATATTTGCCTCTTGCCAAACCGTGTTTAGATGGAGGAGGAAGGGCTCTCTAGACGAGAAAAGAGGGTTTACTATATGGAGGCGCGCACATTACGTTGTTTTTTTGTTTCTCTCCTCCTTCCTATAAGCAAACTGTGCGCAACCTCCCCTGTACCTGCCAAATTTGGAAGTTGGTAATGAGAGGGGGGAGGGGAGGAGTTGCGGGTTGCTATCTCTACTACAACAAAGATTATGGTGCACCGGGGAACCGGAACTAGGGATTACGGAACGTACGAACTCCTTCCCTTTTATTGTCCAGCGCGCAGGGATTCAAATCTGTAAAAATTCTTTATATATACACACATAAGAGCCACACAAAAAAACTACACAAAAAGAAAGGTAGAGAGAGAGAGAGAGGGGGGGAGAAGGACAAACATGTACCATTTATTCCAGGAGTAAGAAATTGTGGGGCGGGGGCTGGGAATTGGAATGTAAAGAAATGTCGGATATCGAGAAACAAAAATTGTGTAAAT] [+] EMBL BM630423 [CCGGAGAGAATGAGGAACCTGCTGCTACTCATCGAAAACCTTTTAAGCAACTTTTGTGCCCGATGAGTAGAAGCGACAAAACGCAAGGGGCATCGATGGGGGAAAAATGCGGTGCGTATTGTTGCCTTTGCGCTCGCATTAGTAGACATATTGATATTTTTGTAACATAGTATCTTTTTCTTTTTAATTGACGTCGTTTCTGCGGCGCTGCCACATGCCACACGCTCGCAGGCCACCACCACACCACCCCTCCCTGATAGGAGCGGGGGTTTTGGGTGCGGCAGCAGATATAGTAGAGCGCAATGCGCTGGGGGTCCGCGCGATTGCAACACGTGTAAAAGTAATTTATTTTCTACGACTTACTAGAAAAAACTAAACGGAACGATATATAGAGCTTTTTGGGGGACGCGTGGAAGAGCGGGCGAGAGTTTTGCATGCACACTTAAAGGGTACTGTGCACCTCCGCCCTCTTCCCCTTCCCAAACGTAGAAGGACAGAAGGAACAAGAGAGAGAGAAAGAGAGGCAAAGAGAATACCATTTAATACAATGCGCGCTGTAAAATACGTTGCCGAAACGAAGCAGCGGTTCAGAAAGTCTGATTTGAGGTAAA ] [+] EMBL BX629119 [ ATGCGCGCTGTAAAATACGTTGCCGAAACGAAGCAGCGGTTCAGAAAGTCTGATTTGAGGTAAATCCTACCTACTACCTACTACGCGGATACGGGAGCCATATAGGAAAGCGGTTCCCTCTTTGCGGGAGCATGATGTGCCCGCGTTTCCTCACTCTCTGTCAATCCTCTTTGCATTGAGAGGAGATGACGATGACGATGATGATGATGCACTTTCGGGATCGCGTCGAAAGTGCATTGTTGGCGATCGGTGTTGCACCGTGTGCAGAGCGCGCCGCATTCAGTTTAAGCTTTAACAAAAGAAGAGGAGGAAGAAAAAAGGGTGAAGATGCAGTGGAGATCAGCCTACGGCCAAGGCATAAAAAAATACGCCAGTGATGAATTCGGGGGCAGGGCTCGTCGGAAGCGTGCACTCTCGGCACCCCGCGTAGGACACTGGATCTGGCATTTGTGGTCTTGTTTTTTTTTTTTTTGTATTGCCAGTCCACCGAGGAAGCACACCGAGAGACGTTGTTGCCGTGTCCGGGGAGCCAGCCGCCCTATGTACATGATGATGATGTTTTACAACAAATATTTGCCTCTTGCCAAACCGTGTTTAGATGGAGGAGGAAGGGCTCTCTAGACGAGAAAAGAGGGTTTACTATATGGAGGCGCGCACATTACGTTGTTTTTTTGTTTCTCTCCTCCTTCCTATAAGCAAACTGTGCGCAACCTCCCCTGTACCTGCCAAATTTGGAAGTTG ] [+] EMBL BX625229 [ AATCCTACCTACTACCTACTACGCGGATACGGGAGCCATATANGAAAGCGGGTCCCTCTTCGCGGGAGCATGATGNGCCCGCGTTTCNTCACTCTCTGTCAATC ] [+] EMBL BX609325 [ TAGATGGAGGAGGAAGGGCTCTCTAGACGAGAAAAGAGGGCTTACTATATGGAGGCGCGCACATTACGTTGTTTTTTTGTTTCTCTCCTCCTTCCTTTAAGCAAACTGTGCGCAACCTCCCCTGTACCTGCCAAATTTGGAAGTTGGTAATGAGAGGGGGGAGGGGAGGAGTTGCGGGTTGCTATCTCTACTACAACAAAGATTATGGTGCACCGGGGAACCGGAACTAGGGATTACGGAACGTACGAACTCCTTCCCTTTTATTGTCCAGCGCGCAGGGATTCAAATCTGTAAAAATTCTTTATATATACACACATAAGAGCCACACAAAAAAACTACACAAAAAGAAAGGTAGAGAGAGAGAGAGAGGGGGGGAGAAGGACAAACATGTACCATTTATTCCAGGAGTAAGAAATTGTGGGGCGGGGGCTGGGAATTGGAATGTAAAGAAATGTCGGATATCGAGAAACAAAAATTGTGTAAAT] consensusID : consensus_6988#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence [CGACCCACGCGTCCGGAGAAGGACAAACATGTACCATTTATTCCAGGAGGAAGAAATTGTGGGGCGGGGGCTGGGAATTGGAATGTAAAGAAATGTCGGATATCGAGAAACAAAAATTGTGTAAATCTGATACGGTAAAAAAAAAAAAGCAAAAGCAGAAACACTCTGCTGCGTTTACCCGCGGCGTACAGAGACAGACGCATTACAGCTGAAAGCAACAGATTATTTTTTATCTCTATCAACGAACCAGAAAAGGGACTCGAAATAATAGTATTTCACAGGACGTTAACATCATCTGCAACCACACACACAGAGCGAGAGAGACACGGAGGGAAAAGCAGGATAACTCCATAGCGAAAAGTGTAAGCTTAAACATTTGTTTCATTTCTGTGTCCTTGGTGAGGTATGAAAAGAATA] [+] EMBL BM645641 [CGACCCACGCGTCCGGAGAAGGACAAACATGTACCATTTATTCCAGGAGGAAGAAATTGTGGGGCGGGGGCTGGGAATTGGAATGTAAAGAAATGTCGGATATCGAGAAACAAAAATTGTGTAAATCTGATACGGTAAAAAAAAAAAAGCAAAAGCAGAAACACTCTGCTGCGTTTACCCGCGGCGTACAGAGACAGACGCATTACAGCTGAAAGCAACAGATTATTTTTTATCTCTATCAACGAACCAGAAAAGGGACTCGAAATAATAGTATTTCACAGGACGTTAACATCATCTGCAACCACACACACAGAGCGAGAGAGACACGGAGGGAAAAGCAGGATAACTCCATAGCGAAAAGTGTAAGCTTAAACATTTGTTTCATTTCTGTGTCCTTGGTGAGGTATGAAAAGAATA] consensusID : consensus_6988#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 217 fasta sequence [CCAGGGGTTTTTTTTTTAACAGAGAGGCAAGAGAATACCACTTTTAATANCAATGCGCGCTGTAAAATACGGGTTTGGCCGAAACGAAAGCAGCGGGTTCAGAAAGTCTGATTTGAGGTAAATCCTACCTACTACCTACTACGCGGATACGGGAGCCATATAGGAAAGCGGTTCCCTCTTCGCGGGAGCATGATGTGCCCGCGTTTCCTCAACTCTC] [+] EMBL AL929618 [CCAGGGGTTTTTTTTTTAACAGAGAGGCAAGAGAATACCACTTTTAATANCAATGCGCGCTGTAAAATACGGGTTTGGCCGAAACGAAAGCAGCGGGTTCAGAAAGTCTGATTTGAGGTAAATCCTACCTACTACCTACTACGCGGATACGGGAGCCATATAGGAAAGCGGTTCCCTCTTCGCGGGAGCATGATGTGCCCGCGTTTCCTCAACTCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6988#0 CCGGAGAGAATGAGGAACCTGCTGCTACTCATCGAAAACCTTTTAAGCAACTTTTGTGCC 60 consensus_6988#2 ------------------------------------------------------------ consensus_6988#1 ------------------------------------------------------------ consensus_6988#0 CGATGAGTAGAAGCGACAAAACGCAAGGGGCATCGATGGGGGAAAAATGCGGTGCGTATT 120 consensus_6988#2 ------------------------------------------------------------ consensus_6988#1 ------------------------------------------------------------ consensus_6988#0 GTTGCCTTTGCGCTCGCATTAGTAGACATATTGATATTTTTGTAACATAGTATCTTTTTC 180 consensus_6988#2 ------------------------------------------------------------ consensus_6988#1 ------------------------------------------------------------ consensus_6988#0 TTTTTAATTGACGTCGTTTCTGCGGCGCTGCCACATGCCACACGCTCGCAGGCCACCACC 240 consensus_6988#2 ------------------------------------------------------------ consensus_6988#1 ------------------------------------------------------------ consensus_6988#0 ACACCACCCCTCCCTGATAGGAGCGGGGGTTTTGGGTGCGGCAGCAGATATAGTAGAGCG 300 consensus_6988#2 ------------------------------------------------------------ consensus_6988#1 ------------------------------------------------------------ consensus_6988#0 CAATGCGCTGGGGGTCCGCGCGATTGCAACACGTGTAAAAGTAATTTATTTTCTACGACT 360 consensus_6988#2 ------------------------------------------------------------ consensus_6988#1 ------------------------------------------------------------ consensus_6988#0 TACTAGAAAAAACTAAACGGAACGATATATAGAGCTTTTTGGGGGACGCGTGGAAGAGCG 420 consensus_6988#2 ------------------------------------------------------------ consensus_6988#1 ------------------------------------------------------------ consensus_6988#0 GGCGAGAGTTTTGCATGCACACTTAAAGGGTACTGTGCACCTCCGCCCTCTTCCCCTTCC 480 consensus_6988#2 ------------------------------------------------------------ consensus_6988#1 -------------------CGACCCACGCGTCCGGAGAAGGACAAACATGTACCATTTAT 41 consensus_6988#0 CAAACGTAGAAGGACAGAAGGAACAAGAGAGAGAGAAAGAGAGGCAAAGAGAATACCA-- 538 consensus_6988#2 ----------------CCAGGGGTTTTTTTTTTA-ACAGAGAGGCAA-GAGAATACCACT 42 consensus_6988#1 TCCAGGAGGAAGAAATTGTGGGGCGGGGGCTGGGAATTGGAATGTAAAGA-AATGTCGGA 100 ** * * * * ** ** *** * consensus_6988#0 TTTAATAC-AATGCGCGCTGTAAAATACG----TTGCCGAAACGAA-GCAGCGG-TTCAG 591 consensus_6988#2 TTTAATANCAATGCGCGCTGTAAAATACGGGTTTGGCCGAAACGAAAGCAGCGGGTTCAG 102 consensus_6988#1 TATCGAGA-AACAAAAATTGTGTAAATCTGATACGGTAAAAAAAAA-AAAGCAAAAGCAG 158 * * ** *** ** * * *** ** *** *** consensus_6988#0 AAAGTCTGATTTGAGGTAAATCCTACCTACTACCTACTACGCGGATACGGGAGCCATATA 651 consensus_6988#2 AAAGTCTGATTTGAGGTAAATCCTACCTACTACCTACTACGCGGATACGGGAGCCATATA 162 consensus_6988#1 AAACACTCTGCTGCGTTTACCCGCGGCGTACAGAGAC-AGACGCATTACAGCTGAAAGCA 217 *** ** ** * * * * * * ** * ** ** * * * consensus_6988#0 GGAAAGCGGTTCCC-TCTTTGCGGGAGCATGATGTGCCCGCGTTTCCTCA-CTCTCTGTC 709 consensus_6988#2 GGAAAGCGGTTCCC-TCTTCGCGGGAGCATGATGTGCCCGCGTTTCCTCAACTCTC---- 217 consensus_6988#1 ACAGATTATTTTTTATCTCTATCAACGAACCAGAAAAGGGACTCGAAATAATAGTATTTC 277 * * ** *** * * * * * * * consensus_6988#0 AATCCTCTTTGCATTGAGAGGAGATGACGATGACGATGATGATGATGCACTTTCGGGATC 769 consensus_6988#2 ------------------------------------------------------------ consensus_6988#1 ACAGGACGTTAACATCATCTGCAACCACACACACAGAGCGAGAGAGACACGGAGGGAAAA 337 consensus_6988#0 GCGTCGAAAGTGCATTGTTGGCGATCGGTGTTGCACCGTGTGCAGAGCGCGCCGCATTCA 829 consensus_6988#2 ------------------------------------------------------------ consensus_6988#1 GCAGGATAACTCCATAGCGAAAAGTGTAAGCTTAAACATTTGTTTCAT-TTCTGTGTCCT 396 consensus_6988#0 GTTTAAGCTTTAACAAAAGAAGAGGAGGAAGAAAAAAGGGTGAAGATGCAGTGGAGATCA 889 consensus_6988#2 ------------------------------------------------------------ consensus_6988#1 TGGTGAGGTATGAAAAGAATA--------------------------------------- 417 consensus_6988#0 GCCTACGGCCAAGGCATAAAAAAATACGCCAGTGATGAATTCGGGGGCAGGGCTCGTCGG 949 consensus_6988#2 ------------------------------------------------------------ consensus_6988#1 ------------------------------------------------------------ consensus_6988#0 AAGCGTGCACTCTCGGCACCCCGCGTAGGACACTGGATCTGGCATTTGTGGTCTTGTTTT 1009 consensus_6988#2 ------------------------------------------------------------ consensus_6988#1 ------------------------------------------------------------ consensus_6988#0 TTTTTTTTTTGTATTGCCAGTCCACCGAGGAAGCACACCGAGAGACGTTGTTGCCGTGTC 1069 consensus_6988#2 ------------------------------------------------------------ consensus_6988#1 ------------------------------------------------------------ consensus_6988#0 CGGGGAGCCAGCCGCCCTATGTACATGATGATGATGTTTTACAACAAATATTTGCCTCTT 1129 consensus_6988#2 ------------------------------------------------------------ consensus_6988#1 ------------------------------------------------------------ consensus_6988#0 GCCAAACCGTGTTTAGATGGAGGAGGAAGGGCTCTCTAGACGAGAAAAGAGGGTTTACTA 1189 consensus_6988#2 ------------------------------------------------------------ consensus_6988#1 ------------------------------------------------------------ consensus_6988#0 TATGGAGGCGCGCACATTACGTTGTTTTTTTGTTTCTCTCCTCCTTCCTATAAGCAAACT 1249 consensus_6988#2 ------------------------------------------------------------ consensus_6988#1 ------------------------------------------------------------ consensus_6988#0 GTGCGCAACCTCCCCTGTACCTGCCAAATTTGGAAGTTGGTAATGAGAGGGGGGAGGGGA 1309 consensus_6988#2 ------------------------------------------------------------ consensus_6988#1 ------------------------------------------------------------ consensus_6988#0 GGAGTTGCGGGTTGCTATCTCTACTACAACAAAGATTATGGTGCACCGGGGAACCGGAAC 1369 consensus_6988#2 ------------------------------------------------------------ consensus_6988#1 ------------------------------------------------------------ consensus_6988#0 TAGGGATTACGGAACGTACGAACTCCTTCCCTTTTATTGTCCAGCGCGCAGGGATTCAAA 1429 consensus_6988#2 ------------------------------------------------------------ consensus_6988#1 ------------------------------------------------------------ consensus_6988#0 TCTGTAAAAATTCTTTATATATACACACATAAGAGCCACACAAAAAAACTACACAAAAAG 1489 consensus_6988#2 ------------------------------------------------------------ consensus_6988#1 ------------------------------------------------------------ consensus_6988#0 AAAGGTAGAGAGAGAGAGAGAGGGGGGGAGAAGGACAAACATGTACCATTTATTCCAGGA 1549 consensus_6988#2 ------------------------------------------------------------ consensus_6988#1 ------------------------------------------------------------ consensus_6988#0 GTAAGAAATTGTGGGGCGGGGGCTGGGAATTGGAATGTAAAGAAATGTCGGATATCGAGA 1609 consensus_6988#2 ------------------------------------------------------------ consensus_6988#1 ------------------------------------------------------------ consensus_6988#0 AACAAAAATTGTGTAAAT 1627 consensus_6988#2 ------------------ consensus_6988#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||