cluster # 6989

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Anopheles gambiae
cluster # 6989 cluster # 6989 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6989#0 length = 870 sequences # 5

consensus_6989#1 length = 529 sequences # 1

consensusID : consensus_6989#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 870
fasta sequence

                              [TTGAATCGTCACTGTGGGATGACAACAAAAAAACTTGCTCCGGCTCAAATCAGAATTCACGGAATTTGCAACGTACAGAACACAATTTACTGCAGCAATCATGGACGTTAGCCAGCTGGAACATTTGATGCGNAATTTAGCGATTAAGGAGACGCGCACCAACAGCCTGGATCTGCTGGAAAGCAAGCTATCCGATGTAAATCAGGACATCTACGAGACAATGCTCTGCTCGGAGAGCCTCTTCAAGTTCCTGGCCGAGGCAGATGCTGACCAGCACACAACAGCATCCCGTATCATCTACGACAAAGCGCTAGAGTTCTTCCCCAACGGGTCGGCCTCGGTCATCGATCGGTTTTTTGAGCGCTGCCTGACCCATCCAAAGAACTCGGTGAAGCAGTTTGGGTTACGCGGTGCGGCCGCCATGGTTTACCATTCGGCCACCATCACACCGAACACGGTGGAGCTCATCA-TTCAACACTGTCTCCCGATGAAAGAGGTGTACGTGGACACGCTGCTGAACGTGCTGGTAAAATGCTTGCCACCGATCTTCACGGAACCGACCGTGCAGAACAAGCTGGTGTCGGTGTTGCAGTTCGACGAAACGGTTCGATGCCGCGTGTACGAGGTCGTGTGCACAGTGCTTGAGCAGCATCCGGCTTACATGCAGATCGCCAGTCCGGTCCTCGAGAGTGCACTGGGCCGATCTGGACAAGGATGACGTGCTGCTGCAGTCGAGCGTGCTGCAGATTCTGACGCAGCTGCTGACCACCAAGGAAGGGTTTGACTATATCGAGGGGATCGATCTGTTCCGGAAGGTGTACGTGAACTTCGTTTCGGTTAAGGTCACCCCGTTCGTGCGCTTCGTGCTGC]

[+] EMBL BX620281             [TTGAATCGTCACTGTGGGATGACAACAAAAAAACTTGCTCCGGCTCAAATCAGAATTCACGGAATTTGCAACGTACAGAACACAATTTACTGCAGCAATCATGGACGTTAGCCAGCTGGAACATTTGATGCGNAATTTAGCGATTAAGGAGACGCGCACCAACAGCCTGGATCTGCTGGAAAGCAAGCTATCCGATGTAAATCAGGACATCTACGAGACAATGCTCTGCTCGGAGAGCCTCTTCAAGTTCCTGGCCGAGGCAGATGCTGACCAGCACACAACAGCATCCCGTATCATCTACGACAAAGCGCTAGAGTTCTTCCCCAACGGGTCGGCCTCGGTCATCGATCGGTTTTTTGAGCGCTGCCTGACCCATCCAAAGAACTCGGTGAAGCAGTTTGGGTTACGCGGTGCGGCCGCCATGGTTTACCATTCGGCCACCATCACACCGAACACGGTGGAGCTCATCA TTCAACACTGTCTCCCGATGAAAGAGGTGTACGTGGACACGCTGCTGAACGTGCTGGTAAAATGCTTGCCACCGATCTTCACGGAACCGACCGTGCAGAACAAGCTGGTGTCGGTGTTGCAGTTCGACGAAACGGTTCGATGCCGCGTGTACNANGTCGTGTGCACAGTGCTTGAGCAGCATCCGGCTTACATGCAGATCGCCAGTCCGGTCCTCGAGAGTGCACTGGGNCGATCTGGACAAGGATGACGTGCTGCTGCAGTCCAGCGTGCTGC                                                                                                                              ]
[+] EMBL BX604409             [                                                          ACGGAATTTGCAACGTACAGAACACAATTTACTGCAGCAATCATGGACGTTAGCCAGCTGGAACATTTGATGCGTAATTTAGCGATTAAGGAGACGCGCACCAACAGCCTGGATCTGCTGGAAAGCAAGCTATCCGATGTAAATCAGGACATCTACGAGACAATGCTCTGCTCGGAGAGCCTCTTCAAGTTCCTGGCCGAGGCAGATGCTGACCAGCACACAACAGCATCCCGTATCATCTACGACAAAGCGCTAGAGTTCTTCCCCAACGGGTCGGCCTCGGTCATCGATCGGTTTTTTGAGCGCTGCCTGACCCATCCAAAGAACTCGGTGAAGCAGTTTGGGTTACGCGGTGCGGCCGCCATGGTTTACCATTCGGCCACCATCACACCGAACACGGTGGAGCTCATCA TTCAACACTGTCTCC                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BX616504             [                                                                                                                                                                                                                                                                                                                                                                               CTGACCCATCCAAAGAACTCGGTGAAGCAGTTTGGGTTACGCGGTGCGGCCGCCATGGTTTACCATTCGGCCACCATCACACCGAACACGGTGGAGCTCATCA TTCAACACTGTCTCCCGATGAAAGAGGTGTACGTGGACACGCTGCTGAACGTGCTGGTAAAATGCTTGCCACCGATCTTCACGGAACCGACCGTGCAGAACAAGCTGGTGTCGGTGTTGCAGTTCGACGAAACGGTTCGATGCCGCGTGTACGAGGTCGTGTGCACAGTGCTTGAGCAGCATCCGGCTTACATGCAGATCGCCAGTCCGGTCCTCGAGAGTGCACT GGCCGATCTGGACAAGGATGACGTGCTGCTGCAGTCGAGCGTGCTGCAGATTCTGACGCAGCTGCTGACCACCAAGGAAGGGTTTGACTATATCGAGGGGATCGATCTGTTCCGGAAGGTGTACGTGAACTTCGTTTCGGTTAAGGTCACCCCGTTCGTGCGCTTCGTGCTGC]
[+] EMBL AGA283400            [                                                                                                                                                                                                                                                                                                                                                                                                                                             CCATTCGGTCACCATCACACCGAACACGGTGGAGCTCATCACATCAACACTGTCACCCAAGGAAAGAGGTGTACGTGGACACGCTGCACACCGTGCTGGTAAAATGTTTGCCACCGATCTTCACGGAACCGACCGTGCATAACAAGCTGGTGTCGGTGTTGCAGTTCGACGAAACGGTTCGATGCCGCGTGTACAACGTCGTGTGCACAGTGCTTGAGCAGCATCCGGCTTACATGCAGATCGCCAGTCCGGTCCTCGAGAGTGCACTGGG CGATCTG                                                                                                                                                                   ]
[+] EMBL AGA281639            [                                                                                                                                                                                                                                                                                                                                                                                                                                               ATTCGGCCACCATCACACCGAACACGGTGGAGCTCATCA TTCAACACTGTCTCCCGATGAAAGAGGTGTACGTGGACACGCTGCTGAACGTGCTGGTAAAATGCTTGCCACCGATCTTCACGGAACCGACCGTGCAGAACAAGCTGGTGTCGGTGTTGCAGTTCGACGAAACGGTTCGATGCCGCGTGTACGAGGTCGTGTGCACAGTGCTTGAGCAGCATCCGGCTTACATGCAGATCGCCAGTCCGGTCCTCGAGAGTGCACT GGCCGATCTGGACAAGGATGACGTGCTGCTGCAGTCGAGCGTGCTGCAGATTCTGACGCAGCTGCTGACCACCAAGGAAGG                                                                                            ]




>consensus_6989#0
TTGAATCGTCACTGTGGGATGACAACAAAAAAACTTGCTCCGGCTCAAATCAGAATTCAC
GGAATTTGCAACGTACAGAACACAATTTACTGCAGCAATCATGGACGTTAGCCAGCTGGA
ACATTTGATGCGNAATTTAGCGATTAAGGAGACGCGCACCAACAGCCTGGATCTGCTGGA
AAGCAAGCTATCCGATGTAAATCAGGACATCTACGAGACAATGCTCTGCTCGGAGAGCCT
CTTCAAGTTCCTGGCCGAGGCAGATGCTGACCAGCACACAACAGCATCCCGTATCATCTA
CGACAAAGCGCTAGAGTTCTTCCCCAACGGGTCGGCCTCGGTCATCGATCGGTTTTTTGA
GCGCTGCCTGACCCATCCAAAGAACTCGGTGAAGCAGTTTGGGTTACGCGGTGCGGCCGC
CATGGTTTACCATTCGGCCACCATCACACCGAACACGGTGGAGCTCATCATTCAACACTG
TCTCCCGATGAAAGAGGTGTACGTGGACACGCTGCTGAACGTGCTGGTAAAATGCTTGCC
ACCGATCTTCACGGAACCGACCGTGCAGAACAAGCTGGTGTCGGTGTTGCAGTTCGACGA
AACGGTTCGATGCCGCGTGTACGAGGTCGTGTGCACAGTGCTTGAGCAGCATCCGGCTTA
CATGCAGATCGCCAGTCCGGTCCTCGAGAGTGCACTGGGCCGATCTGGACAAGGATGACG
TGCTGCTGCAGTCGAGCGTGCTGCAGATTCTGACGCAGCTGCTGACCACCAAGGAAGGGT
TTGACTATATCGAGGGGATCGATCTGTTCCGGAAGGTGTACGTGAACTTCGTTTCGGTTA
AGGTCACCCCGTTCGTGCGCTTCGTGCTGC

consensusID : consensus_6989#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 529
fasta sequence

                              [GAGGCAAGAATCGGCACGTGGACGGAATTGCAACGTACAGAACACAATTTACTGCAGCAATCATGGACGTTAGCCAGCTGGAACATTTGATGCGTAATTTAGCGATTAAGGAGACGCGCACCAACAGCCTGGATCTGCTGGAAAGCAAGCTATCCGATGTAAATCAGGACATCTACGAGACAATGCTCTGCTCGGAGAGCCCTCTTCAAGTTCCCTGGCCGAGGCAGATGCTGACCAGACACAACAGCATCCCGTATCATCTACGACAAAGCGCTAGAGTTCTTCCCCAACGGGTCGGCCTCGGTCATCGATCGGTTTTTTGAGCGCTGCCTGACCCATCCAAAGAACTCGGTGAAGCAGTTTGGGTTACGCGGTGCGGCCGCCATGGTTTACCATTCGGCCACCATCACACCGAACACGGTGGAGCTCATCATTCAACACTGTCNNNNCGATAAAGAGGTGTACGTGGACACGCTGCTGAACGGTGCTGGTAAAATGCTTTGCCACCGATCTTCACGGAACCGACCGT]

[+] EMBL BX468851             [GAGGCAAGAATCGGCACGTGGACGGAATTGCAACGTACAGAACACAATTTACTGCAGCAATCATGGACGTTAGCCAGCTGGAACATTTGATGCGTAATTTAGCGATTAAGGAGACGCGCACCAACAGCCTGGATCTGCTGGAAAGCAAGCTATCCGATGTAAATCAGGACATCTACGAGACAATGCTCTGCTCGGAGAGCCCTCTTCAAGTTCCCTGGCCGAGGCAGATGCTGACCAGACACAACAGCATCCCGTATCATCTACGACAAAGCGCTAGAGTTCTTCCCCAACGGGTCGGCCTCGGTCATCGATCGGTTTTTTGAGCGCTGCCTGACCCATCCAAAGAACTCGGTGAAGCAGTTTGGGTTACGCGGTGCGGCCGCCATGGTTTACCATTCGGCCACCATCACACCGAACACGGTGGAGCTCATCATTCAACACTGTCNNNNCGATAAAGAGGTGTACGTGGACACGCTGCTGAACGGTGCTGGTAAAATGCTTTGCCACCGATCTTCACGGAACCGACCGT]




>consensus_6989#1
GAGGCAAGAATCGGCACGTGGACGGAATTGCAACGTACAGAACACAATTTACTGCAGCAA
TCATGGACGTTAGCCAGCTGGAACATTTGATGCGTAATTTAGCGATTAAGGAGACGCGCA
CCAACAGCCTGGATCTGCTGGAAAGCAAGCTATCCGATGTAAATCAGGACATCTACGAGA
CAATGCTCTGCTCGGAGAGCCCTCTTCAAGTTCCCTGGCCGAGGCAGATGCTGACCAGAC
ACAACAGCATCCCGTATCATCTACGACAAAGCGCTAGAGTTCTTCCCCAACGGGTCGGCC
TCGGTCATCGATCGGTTTTTTGAGCGCTGCCTGACCCATCCAAAGAACTCGGTGAAGCAG
TTTGGGTTACGCGGTGCGGCCGCCATGGTTTACCATTCGGCCACCATCACACCGAACACG
GTGGAGCTCATCATTCAACACTGTCNNNNCGATAAAGAGGTGTACGTGGACACGCTGCTG
AACGGTGCTGGTAAAATGCTTTGCCACCGATCTTCACGGAACCGACCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6989#0      TTGAATCGTCACTGTGGGATGACAACAAAAAAACTTGCTCCGGCTCAAATCAGAATTC-- 58
consensus_6989#1      ---------------------------------------GAGGCAAGAATCGGCACGTGG 21
                                                               ***   **** * *     

consensus_6989#0      ACGGAATTTGCAACGTACAGAACACAATTTACTGCAGCAATCATGGACGTTAGCCAGCTG 118
consensus_6989#1      ACGGAATT-GCAACGTACAGAACACAATTTACTGCAGCAATCATGGACGTTAGCCAGCTG 80
                      ******** ***************************************************

consensus_6989#0      GAACATTTGATGCGNAATTTAGCGATTAAGGAGACGCGCACCAACAGCCTGGATCTGCTG 178
consensus_6989#1      GAACATTTGATGCGTAATTTAGCGATTAAGGAGACGCGCACCAACAGCCTGGATCTGCTG 140
                      ************** *********************************************

consensus_6989#0      GAAAGCAAGCTATCCGATGTAAATCAGGACATCTACGAGACAATGCTCTGCTCGGAGAGC 238
consensus_6989#1      GAAAGCAAGCTATCCGATGTAAATCAGGACATCTACGAGACAATGCTCTGCTCGGAGAGC 200
                      ************************************************************

consensus_6989#0      C-TCTTCAAGTTCC-TGGCCGAGGCAGATGCTGACCAGCACACAACAGCATCCCGTATCA 296
consensus_6989#1      CCTCTTCAAGTTCCCTGGCCGAGGCAGATGCTGACCAG-ACACAACAGCATCCCGTATCA 259
                      * ************ *********************** *********************

consensus_6989#0      TCTACGACAAAGCGCTAGAGTTCTTCCCCAACGGGTCGGCCTCGGTCATCGATCGGTTTT 356
consensus_6989#1      TCTACGACAAAGCGCTAGAGTTCTTCCCCAACGGGTCGGCCTCGGTCATCGATCGGTTTT 319
                      ************************************************************

consensus_6989#0      TTGAGCGCTGCCTGACCCATCCAAAGAACTCGGTGAAGCAGTTTGGGTTACGCGGTGCGG 416
consensus_6989#1      TTGAGCGCTGCCTGACCCATCCAAAGAACTCGGTGAAGCAGTTTGGGTTACGCGGTGCGG 379
                      ************************************************************

consensus_6989#0      CCGCCATGGTTTACCATTCGGCCACCATCACACCGAACACGGTGGAGCTCATCATTCAAC 476
consensus_6989#1      CCGCCATGGTTTACCATTCGGCCACCATCACACCGAACACGGTGGAGCTCATCATTCAAC 439
                      ************************************************************

consensus_6989#0      ACTGTCTCCCGATGAAAGAGGTGTACGTGGACACGCTGCTGAACG-TGCTGGTAAAATGC 535
consensus_6989#1      ACTGTCNNNNCGATAAAGAGGTGTACGTGGACACGCTGCTGAACGGTGCTGGTAAAATGC 499
                      ******        ******************************* **************

consensus_6989#0      TT-GCCACCGATCTTCACGGAACCGACCGTGCAGAACAAGCTGGTGTCGGTGTTGCAGTT 594
consensus_6989#1      TTTGCCACCGATCTTCACGGAACCGACCGT------------------------------ 529
                      ** ***************************                              

consensus_6989#0      CGACGAAACGGTTCGATGCCGCGTGTACGAGGTCGTGTGCACAGTGCTTGAGCAGCATCC 654
consensus_6989#1      ------------------------------------------------------------
                                                                                  

consensus_6989#0      GGCTTACATGCAGATCGCCAGTCCGGTCCTCGAGAGTGCACTGGGCCGATCTGGACAAGG 714
consensus_6989#1      ------------------------------------------------------------
                                                                                  

consensus_6989#0      ATGACGTGCTGCTGCAGTCGAGCGTGCTGCAGATTCTGACGCAGCTGCTGACCACCAAGG 774
consensus_6989#1      ------------------------------------------------------------
                                                                                  

consensus_6989#0      AAGGGTTTGACTATATCGAGGGGATCGATCTGTTCCGGAAGGTGTACGTGAACTTCGTTT 834
consensus_6989#1      ------------------------------------------------------------
                                                                                  

consensus_6989#0      CGGTTAAGGTCACCCCGTTCGTGCGCTTCGTGCTGC 870
consensus_6989#1      ------------------------------------