These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6995#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1136 fasta sequence [CCGCCGATCTCGATCGTGAGCATCGCGAGCTGCCCAGGAACTAGTTTGCTGTGGCGCGAAAAAGTGGCAAAAAAGTATTATCATAATAAGTTTGTGGTTATGGTGCAACTTTAGGGTGTGAATTTTGAAAACAGAGAACGAAAAAGTTTGAAAAGTTACTTACTTACATATAATAAACGAACGACCATGGCAACCATAGAGCAGCTGGGCTACAGTGCATTCTTCATTGCGCTTACCTGCATCTTCGCAATCGTAGCGCGCCGCCTGAACGAACGCATGTCGAAAGATGGGCTGGTGAAGGATTTAATTTTCGAGGCGATAGCAGCGGCAGAACTGTGCGGATGTTGCTTCGAGCTGATAATTGTGGCGGACAATTTTGGCGTCGCGACGTACGCGGTGTTCCTGTTTACGCTTACCATTTGGTGGGGCCGCAACTGGGGCTCGGCTACCGCCTGCCCTTACACCTACATGGAACAGATTGTCGAAGGTGAGGTAAGCTTCAAGGAGGCTTCGCTCAAGATCTGGGCCCAGCTGATGGGAGGCTGCTGCATATTCCGCTACGTGCAGCTGTATTGGTGGTTTGAGCTGGCAGAAACTCACGAAGGCCGTGCCTTCGAAGACTGCAAGGCGGACCTACAGGTGAACCAGTACCTCGGTGCGTTCATCGAAGGTTTTG-CGACGCTCTGCTGCCGGCTCGCATCGAAAGTGATCTCGGAGAAGGATGCCCGGTTCGGTGCGTTCATCGATTCGTTCATCGGAACGAGCCTGGTTGTTGCCGCGTTCAACTACTCGGGCGGCTACTTCAACCCGGTGCTGGCGACCGCCCTGAAGTGGGGCTGTGCGGGCAATTCCGCCCTCGAGCATATCATCGTCTACTGGATTGGATCGTGCATGGGTGCGGTGCTTTCGGTGCCACTGTTCAAGACGGCCACCTTCCGCAACATGTTCCTGACCGACACCAAGACCAAGAGCGAATAAGATGGATGACATGAGGGGGGAGGGGGGGGGGCGGTGCTTCAATAAGCGAAACCAATTTCTAGTCAACGAATGAAGCCTGTGGAAGGTTTATTTATACAACGTTTATTCAATCCTTTGAATTCTTCTACCCCTACAAGCGGCTAGCTACGAGATCTAAC] [+] EMBL BM624218 [CCGCCGATCTCGATCGTGAGCATCGCGAGCTGCCCAGGAACTAGTTTGCTGTGGCGCGAAAAAGTGGCAAAAAAGTATTATCATAATAAGTTTGTGGTTATGGTGCAACTTTAGGGTGTGAATTTTGAAAACAGAGAACGAAAAAGTTTGAAAAGTTACTTACTTACATATAATAAACGAACGACCATGGCAACCATAGAGCAGCTGGGCTACAGTGCATTCTTCATTGCGCTTACCTGCATCTTCGCAATCGTAGCGCGCCGCCTGAACGAACGCATGTCGAAAGATGGGCTGGTGAAGGATTTAATTTTCGAGGCGATAGCAGCGGCAGAACTGTGCGGATGTTGCTTCGAGCTGATAATTGTGGCGGACAATTTTGGCGTCGCGACGTACGCGGTGTTCCTGTTTACGCTTACCATTTGGTGGGGCCGCAACTGGGGCTCGGCTACCGCCTGCCCTTACACCTACATGGAACAGATTGTCGAAGGTGAGGTAAGCTTCAAGGAGGCTTCGCTCAAGATCTGGGCCCAGCTGATGGGAGGCTGCTGCATATTCCGCTACGTTCAACTGTATTGGTGGTTTGAGCTGGCAGAAACTCACGAAGGCCGTGCCTTCGAAGACTGCAAGGCGGACCTGCAGGTGAACCAGTACCTCGGTGCGTTCA ] [+] EMBL BX610614 [ GCGACGTACGCGGTGTTCCTGTTTACGCTTACCATTTGGTGGGGCCGCAACTGGGGCTCGGCTACCGCCTGCCCTTACACCTACATGGAACAGATTGTCGAAGGTGAGGTAAGCTTCAAGGAGGCTTCGCTCAAGATCTGGGCCCAGCTGATGGGAGGCTGCTGCATATTCCGCTACGTGCAGCTGTATTGGTGGTTTGAGCTGGCAGAAACTCACGAAGGCCGTGCCTTCGAAGACTGCAAGGCGGACCTACAGGTGAACCAGTACCTCGGTGCGTTCATCGAAGGTTTTG CGACGCTCTGCTGCCGGCTCGCATCGAAAGTGATCTCGGAGAAGGATGCCCGGTTCGGTGCGTTCATCGATTCGTTCATCGGAACGAGCCTGGTTGTTGCCGCGTTCAACTACTCGGGCGGCTACTTCAACCCGGTGCTGGCGACCGCCCTGAAGTGGGGCTGTGCGGGCAATTCCGCCCTCGAGCATATCATCGTCTACTGGATTGGATCGTGCATGGGTGCGGTGCTTTCGG ] [+] EMBL BX622879 [ TACGCGGTGTTCCTGTTTACGCTTACCATTTGGTGGGGCCGCAACTGGGGCTCGGCTACCGCCTGCCCTTACACCTACATGGAACAGATTGTCGAAGGTGAGGTAAGCTTCAAGGAGGCTTCGCTCAAGATCTGGGCCCAGCTGATGGGAGGCTGCTGCATATTCCGCTACGTGCAGCTGTATTGGTGGTTTGAGCTGGCAGAAACTCACGAAGGCCGTGCCTTCGAAGACTGCAAGGCGGACCTACAGGTGAACCAGTACCTCGGTGCGTTCATCGAAGGTTTTG CGACGCTCTGCTGCCGGCTCGCATCGAAAGTGATCTCGGAGAAGGATGCCCGGTTCGGTGCGTTCATCGATTCGTTCATCGGAACGAGCCTGGTTGTTGCCGCGTTCAACTACTCGGGCGGCTACTTCAACCCGGTGCTGGCGACCGCCCTGAAGTGGGGCTGTGCGGGCAATTCCGCCCTCGAGCATATCATCGTCTACTGGATTGGATCGTGCATGGGTGCGGTGCTTTCGGTGCCACTGTTCAAGACGGCCACCTTCCGCAACATGTTCCTGACCGACACCAAGACCAAGAGCGAATAAGATGGAT ] [+] EMBL BX610613 [ CGGCTACCGCCTGCCCTTACACCTACATGGAACAGATTGTCGAAGGTGAGGTAAGCTTCAAGGAGGCTTCGCTCAAGATCTGGGCCCAGCTGATGGGAGGCTGCTGCATATTCCGCTACGTGCAGCTGTATTGGTGGTTTGAGCTGGCAGAAACTCACGAAGGCCGTGCCTTCGAAGACTGCAAGGCGGACCTACAGGTGAACCAGTACCTCGGTGCGTTCATCGAAGGTTTTGTCTACGCTCTGCTGCCGGCTCGCATCGAAAGTGATCTCGGAGAAGGATGCCCGGTTCGGTGCGTTCATCGATTCGTTCATCGGAACGAGCCTGGTTGTTGCCGCGTTCAACTACTCGGGCGGCTACTTCAACCCGGTGCTGGCGACCGCCCTGAAGTGGGGCTGTGCGGGCAATTCCGCCCTCGAGCATATCATCGTCTACTGGATTGGATCGTGCATGGGTGCGGTGCTTTCGGTGCCACTGTTCAAGACGGCCACCTTCCGCAACATGTTCCT ] [+] EMBL BX626654 [ GCTTCGCTCAAGATCTGGGCCCAGCTGATGGGAGGCTGCTGCATATTCCGCTACGTGCAGCTGTATTGGTGGTTTGAGCTGGCAGAAACTCACGAAGGCCGTGCCTTCGAAGACTGCAAGGCGGACCTACAGGTGAACCAGTACCTCGGTGCGTTCATCGAAGGTTTTG CGACGCTCTGCTGCCGGCTCGCATCGAAAGTGATCTCGGAGAAGGATGCCCGGTTCGGTGCGTTCATCGATTCGTTCATCGGAACGAGCCTGGTTGTTGCCGCGTTCAACTACTCGGGCGGCTACTTCAACCCGGTGCTGGCGACCGCCCTGAAGTGGGGCTGTGCGGGCAATTCCGCCCTCGAGCATATCATCGTCTACTGGATTGGATCGTGCATGGGTGCGGTGCTTTCGGTGCCACTGTTCAAGACGGCCACCTTCCGCAACATGTTCCTGACCGACACCAAGACCAAGAGCGAATAAGATGGATGACATGAGGGGGGAGGGGGGGGGGCGGTGCTTCAATAAGCGAAACCAATTTCTAGTCAACGAATGAAGCCTGTGGAAGGTTTATTTATACAACGTTTATTCAATCCTTTGAATTCTTCTACCCCTACAAGCGGCTAGCTACGAGATCTAAC] consensusID : consensus_6995#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [GGCCAAAGAAATGCNAGAGGGTNACTCAGAGGCTCGCTTCAGATCTGTGCCAGCTGATGGGAGGCTGCTGCATATCCGCTACGTGCAGCTGTATTGGTGGTTTGAGCTGGCGAGAAACTCACGAAGGCCGTGCCTTCGAAGACTGCAAGGGCGGACCTACAGGTGAACCAGTACCTCGGTGCGTTCATCGAAGGTTTTGCGACGCTCTGCTGCCGGCTCGCATCGAAAGTGATCTCGGAGAAGGATGCCCGGTTCGGTGCCGTTCATCGATTCGTTCATCGGGAACGAGCCTG] [+] EMBL AL929756 [GGCCAAAGAAATGCNAGAGGGTNACTCAGAGGCTCGCTTCAGATCTGTGCCAGCTGATGGGAGGCTGCTGCATATCCGCTACGTGCAGCTGTATTGGTGGTTTGAGCTGGCGAGAAACTCACGAAGGCCGTGCCTTCGAAGACTGCAAGGGCGGACCTACAGGTGAACCAGTACCTCGGTGCGTTCATCGAAGGTTTTGCGACGCTCTGCTGCCGGCTCGCATCGAAAGTGATCTCGGAGAAGGATGCCCGGTTCGGTGCCGTTCATCGATTCGTTCATCGGGAACGAGCCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6995#0 CCGCCGATCTCGATCGTGAGCATCGCGAGCTGCCCAGGAACTAGTTTGCTGTGGCGCGAA 60 consensus_6995#1 ------------------------------------------------------------ consensus_6995#0 AAAGTGGCAAAAAAGTATTATCATAATAAGTTTGTGGTTATGGTGCAACTTTAGGGTGTG 120 consensus_6995#1 ------------------------------------------------------------ consensus_6995#0 AATTTTGAAAACAGAGAACGAAAAAGTTTGAAAAGTTACTTACTTACATATAATAAACGA 180 consensus_6995#1 ------------------------------------------------------------ consensus_6995#0 ACGACCATGGCAACCATAGAGCAGCTGGGCTACAGTGCATTCTTCATTGCGCTTACCTGC 240 consensus_6995#1 ------------------------------------------------------------ consensus_6995#0 ATCTTCGCAATCGTAGCGCGCCGCCTGAACGAACGCATGTCGAAAGATGGGCTGGTGAAG 300 consensus_6995#1 ------------------------------------------------------------ consensus_6995#0 GATTTAATTTTCGAGGCGATAGCAGCGGCAGAACTGTGCGGATGTTGCTTCGAGCTGATA 360 consensus_6995#1 ------------------------------------------------------------ consensus_6995#0 ATTGTGGCGGACAATTTTGGCGTCGCGACGTACGCGGTGTTCCTGTTTACGCTTACCATT 420 consensus_6995#1 ------------------------------------------------------------ consensus_6995#0 TGGTGGGGCCGCAACTGGGGCTCGGCTACCGCCTGCCCTTACACCTACATGGAACAGATT 480 consensus_6995#1 --------------------------------------------------------GGCC 4 * consensus_6995#0 GTCGAAGGTGAGGTAAGCTTCAAGGAGGCTTCGCTCAAGATCTGGGCCCAGCTGATGGGA 540 consensus_6995#1 AAAGAAATGCNAGAGGGTNACTCAGAGGCT-CGCTTCAGATCTGTGCC-AGCTGATGGGA 62 *** * * * ****** **** ******* *** *********** consensus_6995#0 GGCTGCTGCATATTCCGCTACGTGCAGCTGTATTGGTGGTTTGAGCTGGC-AGAAACTCA 599 consensus_6995#1 GGCTGCTGCATAT-CCGCTACGTGCAGCTGTATTGGTGGTTTGAGCTGGCGAGAAACTCA 121 ************* ************************************ ********* consensus_6995#0 CGAAGGCCGTGCCTTCGAAGACTGCAAGG-CGGACCTACAGGTGAACCAGTACCTCGGTG 658 consensus_6995#1 CGAAGGCCGTGCCTTCGAAGACTGCAAGGGCGGACCTACAGGTGAACCAGTACCTCGGTG 181 ***************************** ****************************** consensus_6995#0 CGTTCATCGAAGGTTTTGCGACGCTCTGCTGCCGGCTCGCATCGAAAGTGATCTCGGAGA 718 consensus_6995#1 CGTTCATCGAAGGTTTTGCGACGCTCTGCTGCCGGCTCGCATCGAAAGTGATCTCGGAGA 241 ************************************************************ consensus_6995#0 AGGATGCCCGGTTCGGTGC-GTTCATCGATTCGTTCATCGG-AACGAGCCTGGTTGTTGC 776 consensus_6995#1 AGGATGCCCGGTTCGGTGCCGTTCATCGATTCGTTCATCGGGAACGAGCCTG-------- 293 ******************* ********************* ********** consensus_6995#0 CGCGTTCAACTACTCGGGCGGCTACTTCAACCCGGTGCTGGCGACCGCCCTGAAGTGGGG 836 consensus_6995#1 ------------------------------------------------------------ consensus_6995#0 CTGTGCGGGCAATTCCGCCCTCGAGCATATCATCGTCTACTGGATTGGATCGTGCATGGG 896 consensus_6995#1 ------------------------------------------------------------ consensus_6995#0 TGCGGTGCTTTCGGTGCCACTGTTCAAGACGGCCACCTTCCGCAACATGTTCCTGACCGA 956 consensus_6995#1 ------------------------------------------------------------ consensus_6995#0 CACCAAGACCAAGAGCGAATAAGATGGATGACATGAGGGGGGAGGGGGGGGGGCGGTGCT 1016 consensus_6995#1 ------------------------------------------------------------ consensus_6995#0 TCAATAAGCGAAACCAATTTCTAGTCAACGAATGAAGCCTGTGGAAGGTTTATTTATACA 1076 consensus_6995#1 ------------------------------------------------------------ consensus_6995#0 ACGTTTATTCAATCCTTTGAATTCTTCTACCCCTACAAGCGGCTAGCTACGAGATCTAAC 1136 consensus_6995#1 ------------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||