These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7016#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1030 fasta sequence [GGTGCTGGCGGAGCTGGCCCGCTTTCACGCGGTCAGCCTCGCGTACCAGCGGCGCCATCCGGCCGAGTTCCGGCAGCTGACCGGCGCGCTCGAGGAGGGCATCTTTTCGCAGGCGAACGAGGAATGGTACCGCCGGTACTACGACGTGCTGACGCGCAACGCCATCCAGATGGTGCGGCAAACGGTGCCGGAAAAGCGGGACCATCTGGCCAAGCTGGAGGCGTTCCTGGGCAACTGTTTCGGCCACCTGGTGGAGCTGGTAAACCGGACCAGCGAGCTGTCGGTCATCTGCCACGGCGACTGCTGGACGAACAACATACTCTTCCGGTACGATGATGCCGGCGCAATCGCTGAGACGTTTTTGGTGGACTTTCAGCTCATCCGGCACGGTTCGCTAGCGCTCGATCTCGCCTACCTGATCTACTGCTGCACCGATGGGGCGCTGCGCAAGAAGAGCCTGCAGCACTGGCTGCAGACGTACCACCAGCAACTGGTACGCTCGCTGCGGTTGCTGCTGGGCGACGGTGGGTTCGCCGAAGCGTTCGGCTCCGACCAGCGGCTGTGGGAGCAGATCGGCGACGAGTTCAGGGTGTGCGCCCGGTTCGGGCTCGGCGCGGCCATGGACATGCTGCCGATCAGCACCTGCTCGTCGGAGGAGGCGCCCGATCTGTACGCGAGCGGGACGGAGACGGCCGCCACGCCGCCCGAGCTGAACGTGCCGCCGAACGAGCTGTGCCGGCAGAAGATGACCATGCTGGTGCTGGAGCTGATCGATGGCGGCATGCTGTGAGGCGCAGAAACGAAAGAACGCTGACGGCGGTGGCGGTTTAAAGGCTCTCTAGGAGGAAGGCGTGCCGGTCGTTACTAGCGATACCTGAGCGTTGGGACCTGCGAGGGGCGGGTCCGGGGAATGTTGGCAGTATTTTAGGGGCCCCGCAGGGCTGTAGCAAATGTACTATTCGTTAGTCAACTGTGCCGATTATGCACTATGCTCGTGCTCGTTTATGCTACCCAATGACAATAAATATAT] [+] EMBL BX609085 [GGTGCTGGCGGAGCTGGCCCGCTTTCACGCGGTCAGCCTCGCGTACCAGCGGCGCCATCCGGCCGAGTTCCGGCAGCTGACCGGCGCGCTCGAGGAGGGCATCTTTTCGCAGGCGAACGAGGAATGGTACCGCCGGTACTACGACGTGCTGACGCGCAACGCCATCCAGATGGTGCGGCAAACGGTGCCGGAAAAGCGGGACCATCTGGCCAAGCTGGAGGCGTTCCTGGGCAACTGTTTCGGCCACCTGGTGGAGCTGGTAAACCGGACCAGCGAGCTGTCGGTCATCTGCCACGGCGACTGCTGGACGAACAACATACTCTTCCGGTACGATGATGCCGGCGCAATCGCTGAGACGTTTTTGGTGGACTTTCAGCTCATCCGGCACGGTTCGCTAGCGCTCGATCTCGCCTACCTGATCTACTGCTGCACCGATGGGGCGCTGCGCAAGAAGAGCCTGCAGCACTGGCTGCAGACGTACCACCAGCAACTGGTACGTTCGCTGCGGTTGCTGCTGGGCGACGGTGGGTTCGCCGAAGCGTTCGGCTCCGACCAGCGGCTGTGGGAGC ] [+] EMBL BX610394 [GGTGCTGGCGGAGCTGGCCCGCTTTCACGCGGTCAGCCTCGCGTACCAGCGGCGCCATCCGGCCGAGTTCCGGCAGCTGACCGGCGCGCTCGAGGAGGGCATCTTTTCGCAGGCGAACGAGGAATGGTACCGCCGGTACTACGACGTGCTGACGCGCAACGCCATCCAGATGGTGCGGCAAACGGTGCCGGAAAAGCGGGACCATCTGGCCAAGCTGGAGGCGTTCCTGGGCAACTGTTTCGGCCACCTGGTGGAGCTGGTAAACCGGACCAGCGAGCTGTCGGTCATCTGCCACGGCGACTGCTGGACGAACAACATACTCTTCCGGTACGATGATGCCGGCGCAATCGCTGAGACGTTTTTGGTGGACTTTCAGCTCATCCGGCACGGTTCGCTAGCGCTCGATCTCGCCTACCTGATCTACTGCTGCACCGATGGGGCGCTGCGCAAGAAGAGCCTGCAGCACTGGCTGCAGACGTACCACCAGCAACTGGTA ] [+] EMBL BX617202 [ GATGGTGCGGCAAACGGTGCCGGAAAAGCGGGACCATCTGGCCAAGCTGGAGGCGTTCCTGGGCAACTGTTTCGGCCACCTGGTGGAGCTGGTAAACCGGACCAGCGAGCTGTCGGTCATCTGCCACGGCGACTGCTGGACGAACAACATACTCTTCCGGTACGATGATGCCGGCGCAATCGCTGAGACGTGTTTGGTGGACTTTCAGCTCATCCGGCACGGTTCGCTAGCGCTCGATCTCGCCTACCTGATCTACTGCTGCACCGATGGGGCGCTGCGCAAGAAGAGCCTGCAGCACTGGCTGCAGACGTACCACCAGCAACTGGTACGCTCGCTGCGGTTGCTGCTGGGCGACGGTGGGTTCGCCGAAGCGTTCGGCTCCGACCAGCGGCTGTGGGAGCAGATCGGCGACGAGTTCAGGGTGTGCGCCCGGTTCGG ] [+] EMBL BX618419 [ ACCTGGTGGAGCTGGTAAACCGGACCTGCGAGCTGTCGGTCATCTGCCACGGCGACTGCTGGACGAACAACATACTCTTCCGGTACGATGATGCCGGCGCAATCGCTGAGACGTGTTTGGTGGACTTTCAGCTCATCCGGCACGGTTCGCTAGCGCTCGATCTCGCCTACCTGATCTACTGCTGCACCGATGGGGCGCTGCGCAAGAAGAGCCTGCAGCACTGGCTGCAGACGTACCACCAGCAACTGGTACGCTCGCTGCGGTTGCTGCTGGGCGACGGTGGGTTCGCCGAAGCGTTCGGCTCCGACCAGCGGCTGTGGGAGCAGATCGGCGACGAGTTCAGGGTGTGCGCCCGGTTCGGGCTCGGCGCGGCCATGGACATGCTGCCGATCAGCACCTGCTCGTCGGAGGAGGCGCCCGATCTGTACGCGAGCGGGACGGAGACGGCCGCCACGCCGCCCGAGCTGAACGTGCCGCCGAACGAGCTGTGCCGGCAGAAGATGACCATGCTGGTGCTGGAGCTGATCGATGGCGGCATGCTGTGAGGCGCAGAAACGAAAGAACGCTGACGGCGGTGGCGGTTTAAAGGCTCTCTAGGAGGAAGGCGTGCCGGTCGTTACTAGCGATACCTGAGCGTTGGGACCTGCGAGGGGCGGGTCCGGGGAATGTTGGCAGTATTTTAGGGGCCCCGCAGGGCTGTAGCAAATGTACTATTCGTTAGTCAACTGTGCCGATTATGCACTATGCTCGTGCTCGTTTATGCTACCCAATGACAATAAATATAT] [+] EMBL BX618197 [ CGTCGGAGGAGGCGCCCGATCTGTACGCGAGCGGGACGGAGACGGCCGCCACGCCGCCCGAGCTGAACGTGCCGCCGAACGAGCTGTGCCGGCAGAAGAAGACCATGCTG ] consensusID : consensus_7016#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [ACCANCGGCGCCATCCGGCCGAGTTCCGGCAGCTGACCGGCGCGCTCGAGGAGGGCATCTTTTCGCAGGCGAACGAGGAATGGTACCGCCGGTACTACGACGTGCTGACGCGCAACGCCATCCAGATGGTGCGGCAAACGGTGCCGGAAAAGCGGGACCATCTGGCCAAGCTGGAGCGGTTCCTGGGCAACTGTTTCGGCCACCTGGTGGAGCTGGTAAACCGGACCAGCGAGCTGTCGGTCATCTGCCACGGCGACTGCTGGACGAACAACATACTCTTCCGGTACGATGAGGCCGGCGCAATCGCTGAGACGTGTTTGGTGGACTTTCAGCTCATCCGGCATGCTGTGAGGTGCAGAAGCGAAGGAACGCTGACGGTGGCGGTTTAAAGGCTCTCTAGCAGGAAGGCATGCCGGTCGTTACTAGCGATACCTGAGCGTTGGGACCTGCGAGGGGAGGGTCCGGGGAATGTTGGCAGTATTTTAGGGGCCCCGCANGGCTGTAGCAAATGTACTATTCGTTAGTCAACTGTGCCGATTATGCACTATGCTCGTGCTCGTTTATGCTACCCAATGACAATAAATATATGA] [+] EMBL BX627008 [ACCANCGGCGCCATCCGGCCGAGTTCCGGCAGCTGACCGGCGCGCTCGAGGAGGGCATCTTTTCGCAGGCGAACGAGGAATGGTACCGCCGGTACTACGACGTGCTGACGCGCAACGCCATCCAGATGGTGCGGCAAACGGTGCCGGAAAAGCGGGACCATCTGGCCAAGCTGGAGCGGTTCCTGGGCAACTGTTTCGGCCACCTGGTGGAGCTGGTAAACCGGACCAGCGAGCTGTCGGTCATCTGCCACGGCGACTGCTGGACGAACAACATACTCTTCCGGTACGATGAGGCCGGCGCAATCGCTGAGACGTGTTTGGTGGACTTTCAGCTCATCCGGCATGCTGTGAGGTGCAGAAGCGAAGGAACGCTGACGGTGGCGGTTTAAAGGCTCTCTAGCAGGAAGGCATGCCGGTCGTTACTAGCGATACCTGAGCGTTGGGACCTGCGAGGGGAGGGTCCGGGGAATGTTGGCAGTATTTTAGGGGCCCCGCANGGCTGTAGCAAATGTACTATTCGTTAGTCAACTGTGCCGATTATGCACTATGCTCGTGCTCGTTTATGCTACCCAATGACAATAAATATATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7016#0 GGTGCTGGCGGAGCTGGCCCGCTTTCACGCGGTCAGCCTCGCGTACCAGCGGCGCCATCC 60 consensus_7016#1 --------------------------------------------ACCANCGGCGCCATCC 16 **** *********** consensus_7016#0 GGCCGAGTTCCGGCAGCTGACCGGCGCGCTCGAGGAGGGCATCTTTTCGCAGGCGAACGA 120 consensus_7016#1 GGCCGAGTTCCGGCAGCTGACCGGCGCGCTCGAGGAGGGCATCTTTTCGCAGGCGAACGA 76 ************************************************************ consensus_7016#0 GGAATGGTACCGCCGGTACTACGACGTGCTGACGCGCAACGCCATCCAGATGGTGCGGCA 180 consensus_7016#1 GGAATGGTACCGCCGGTACTACGACGTGCTGACGCGCAACGCCATCCAGATGGTGCGGCA 136 ************************************************************ consensus_7016#0 AACGGTGCCGGAAAAGCGGGACCATCTGGCCAAGCTGGAGGCGTTCCTGGGCAACTGTTT 240 consensus_7016#1 AACGGTGCCGGAAAAGCGGGACCATCTGGCCAAGCTGGAGCGGTTCCTGGGCAACTGTTT 196 **************************************** ****************** consensus_7016#0 CGGCCACCTGGTGGAGCTGGTAAACCGGACCAGCGAGCTGTCGGTCATCTGCCACGGCGA 300 consensus_7016#1 CGGCCACCTGGTGGAGCTGGTAAACCGGACCAGCGAGCTGTCGGTCATCTGCCACGGCGA 256 ************************************************************ consensus_7016#0 CTGCTGGACGAACAACATACTCTTCCGGTACGATGATGCCGGCGCAATCGCTGAGACGTT 360 consensus_7016#1 CTGCTGGACGAACAACATACTCTTCCGGTACGATGAGGCCGGCGCAATCGCTGAGACGTG 316 ************************************ ********************** consensus_7016#0 TTTGGTGGACTTTCAGCTCATCCGGCACGGTTCGCTAGCGCTCGATCTCGCCTACCTGAT 420 consensus_7016#1 TTTGGTGGACTTTCAGCTCATCCGGCATGCTGTGA-GGTGCAGAAGCGAAGGAAC---GC 372 *************************** * * * * ** * * ** consensus_7016#0 CTACTGCTGCACCGATGGGGCGCTGCGCAAGAAGAGCCTGCAGCACTGGCTGCAGACGTA 480 consensus_7016#1 TGACGGTGGCGGTTTAAAGGCTCTCTAGCAGGAAGGCATGC--CGGTCGTTACTAGCGAT 430 ** * ** *** ** ** * ** *** * * * * * ** consensus_7016#0 CCACCAGCAACTGGTACGCTCGCTGCGGTTGCTGCTGGGCGACGGTGGGTTCGCCGAAGC 540 consensus_7016#1 ACCTGAGCG-TTGGGAC-----CTGCGAGGG--GAGGGTCCGGGGAATGTTGGCAGTATT 482 * *** *** ** ***** * * ** * ** *** ** * * consensus_7016#0 GTTCGGCTCCGACCAGCGGCTGTGGGAGCAGATCGGCGACGAGTTCAGGGTGTGCGCCCG 600 consensus_7016#1 TTAGGGGCCCCGC--ANGGCTGT---AGCAAATGTACTATTCGTTAGTCAACTGTGCCGA 537 * ** ** * ****** **** ** * * *** ** *** consensus_7016#0 GTTCGGGCTCGGCGCGGCCATGGACATGCTGCCGATCAGCACCTGCTCGTCGGAGGAGGC 660 consensus_7016#1 TTATGCACTATGCTCGTGCTCGTTTATGCTACCCAATGACAATAAATATATGA------- 590 * * ** ** ** * * ***** ** * ** * * consensus_7016#0 GCCCGATCTGTACGCGAGCGGGACGGAGACGGCCGCCACGCCGCCCGAGCTGAACGTGCC 720 consensus_7016#1 ------------------------------------------------------------ consensus_7016#0 GCCGAACGAGCTGTGCCGGCAGAAGATGACCATGCTGGTGCTGGAGCTGATCGATGGCGG 780 consensus_7016#1 ------------------------------------------------------------ consensus_7016#0 CATGCTGTGAGGCGCAGAAACGAAAGAACGCTGACGGCGGTGGCGGTTTAAAGGCTCTCT 840 consensus_7016#1 ------------------------------------------------------------ consensus_7016#0 AGGAGGAAGGCGTGCCGGTCGTTACTAGCGATACCTGAGCGTTGGGACCTGCGAGGGGCG 900 consensus_7016#1 ------------------------------------------------------------ consensus_7016#0 GGTCCGGGGAATGTTGGCAGTATTTTAGGGGCCCCGCAGGGCTGTAGCAAATGTACTATT 960 consensus_7016#1 ------------------------------------------------------------ consensus_7016#0 CGTTAGTCAACTGTGCCGATTATGCACTATGCTCGTGCTCGTTTATGCTACCCAATGACA 1020 consensus_7016#1 ------------------------------------------------------------ consensus_7016#0 ATAAATATAT 1030 consensus_7016#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||