These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7019#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 993 fasta sequence [CCTGAACCATCTCTCTTTTGTAATTAATTTTCTCCTTCTGTACTTCGTACTCATACTACATTGGGTCAAAACACAGAGCACATACTACCGCTG-GCTGCTAAAATTATAAATAGGTAAACGAAAACAGAACAAACAAAAAAAAACCAAACAGTATCTTGGCCGTACTATGCTAAAGGCCGGATTTAAGTCAAGTAGAACTAGAACAAATATTTTAGTGCAATTTGTAGTGAGGCTTGCGGTGCGGTTTTGGGCCATTGTCCTCTTCTGTAGTCTTTACTCACGCAACCGAAGTAGGGG-CGAGGGTGGCAGTTGCAGTGCAACTGCCATATTCAATAATGCTCTATAGTCCGCACTCCACACAGGAACGAATGCTAGCCACAGATGATAGTGAGAAAATTGGTTCTAGGAGTACACCGCATAGAACAATTAGCAATAGTAGTATACAGAACCGTATGTGTGTGT-T--TATCGAAAGTAATTCCAGTGTTTTT-CTGTGTTAAAACACAGATAGATTAAAAAAGACAGGGTTAAGTTACAGCTACACAGTAAGAGTGCCGAGGGGTTTAGTCGAATTGGCCGACATTTGCTCAAACAGGGCACAAGTAAAGTAAGAAACGTGTTCTTCCGTTCGTTTACTTTTGTGCATCGGATCACTTATTGGAAAAAGGAAATCCCGTTTTCTACGAGAGACTGAGCAATTAATACAACCTAAGCTTACGTTCTCTACGAATTTATGTTCCCGAACAGCGTATCGCACGCAAGATAAGGAGAACTTAATTAGGGATTATTATAAAATTCCTTTCCATATGGGTTGTATGTTTCGTTTTGTAAAGTTTTCCTTCTTTGGGTGATATTTTACGCTAGGTTTTGCTGTTCAGATTGTTAATAACGATCGGAGTGTGTATAGAGGATCAATTAAATTATTAATAAAAAGTAAAACCGTTTACCGTTTTATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGC] [+] EMBL BX624802 [CCTGAACCATCTCTCTTTTGTAATTAATTTTCTCCTTCTGTACTTCGTACTCATACTACATTGGGTCAAAACACAGAGCACATACTACCGCTG GCTGCTAAAATTATAAATAGGTAAACGAAAACAGAACAAAC AAAAAAAACCAAACAGTATCTTGGCCGTACTATGCTGAAGGCCGGATTTAAGTCAAGTAGAACTAGAACAAATATTTTAGTGCAATTTGTAGTGAGGCTTGCGGTGCGGTTTTGGGCCATTGTCCTCTTCTGTAGTCTTTACTCACGCAACCGAAGTAGGGG CGAGGGTGGCAGTTGCAGTGCAACTGCCATATTCAATAATGCTCTATAGTCCGCACTCCACACAGGAACGAATGCTAGCCACAGATGATAGTGAGAAAATTGGTTCTAGGAGTACACCGCATAGAACAATTAGCAATAGTAGTATACAGAACCGTATGTGTGTGT T TATCGAAAGTAATTCCAGTGTTTTT CTGTGTTAAAACACAGATAGATTAAAAAAGACAGGGTTAAGTTACAGCTACACAGTAAGAGTGCCGAGGGGTTTAGTCGAATTGGCCGACATTTGCTCAAACAGGGCACAAG ] [+] EMBL CNS09OH7 [ TGAACCATCTCTCTTTTGTAATTAATTTTCTCCTTCTGTACTTCGTACTCATACTACATTGGGTCAAAACACAGAGCACATACTACCGCTGTGCTGCTAAAATTATAAATAGGTAAACGAAAACAGAACAAACAAAAAAAAACCAAACAGTATCTTGGCCGTACTATGCTAAAGGCCGGATTTAAGTCAAGTAGAACTAGAACAAATATTTTAGTGCAATTTGTAGTGAGGCTTGCGGTGCGGTTTTGGGCCATTGTCCTCTTCTGTAGTCTTTACTCACGCAACCGAAGTAGGGGCCGAGGGTGGCAGTTGCAGTGCAATTGCCATATTCAATAATGATCTTTAGTCCGCACTCCACACAGGAACGAATGCTAGCCACAGATGATAGTGAGAAAATTGGTTCTAGGAGTACACCGCATAGAACAATTAGCAATAGTAGTATACAGAACCGTATGTGTGTGTGTC TATCGAAAGTAATTCCAGTGTTTTT CTGTGTTAAAACACAGATAGATTAAAAAAGGCAGGGTTAAGTTACAGCTAAACAGTAAGAGTGCCGAGGGGTTTAGTCGAATTTGCCGACATTTGCTCAAACAGGGCACAAGTAAAGTAAGAAACGTGTTCTTCCGTTCGTTTACTTTTGTGCATCGGATCACTTATTGGAAAAAGGAAATCCCGTTTTCTACGAGAGACTGAGCAATTAATACAACCTAAGCTTACGTTCTCTACGAATTTATGTTCCCGAACAGCGTATCGCACGCAAGATAAGGAGAACTTAATTAGGGATTATTATAAAATTCCTTTCCATATGGGTTGTATGTTTCGTTTTGTAAAGTTTTCCTTCTTTGGGTGATATTTTACGCTAGGTTTTGCTGTTCAGATTGTTAATAACGATCGGAGTGTGTATAGAGGATCAATTAAATTATTAATAAAAAGTAAAACCGTTTACCGTTTTATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGC] [-] EMBL CNS09OH8 [ CTAAAATTATAAATAGGTAAACGAAAACAGAACAAACAAAAAAAAACCAAACAGTATCTTGGCCGTACTATGCTAAAGGCCGGATTTAAGTCAAGTAGAACTAGAACAAATATTTTAGTGCAATTTGTAGTGAGGCTTGCGGTGCGGTTTTGGGCCATTGTCCTCTTCTGTAGTCTTTAATCACGCAACCGAAGTAGGGGCCGAGGGTGGCAGTTGCAGTGCAATTGCCATATTCAATAATGATCTTTAGTCCGCACTCCAAACAGGAACGAATGCTAGCCACAGATGATAGTGAGAAAATTGGTTCTAGGAGTACCCCGCATAGAACAATTAGCAATAGTAGTATAAAGAACCGTATGTGTGTGT TTCTATCGAAAGTAATTCCAGTGTTTTTACTGTGTTAAAACAAAGATAGATTAAAAAAGGCAGGGTTAAGTTACAGCTAAACAGTAAGAGTGCCGAGGGGTTTAGTCGAATTTGCCGACATTTGCTCAAACAGGGCACAAGTAAAGTAAGAAACGTGTTCTTCCGTTCGTTTACTTTTGTGCATCGGATCACTTATTGGAAAAAGGAAATCCCGTTTTCTACGAGAGACTGAGCAATTAATACAACCTAAGCTTACGTTCTCTACGAATTTATGTTCCCGAACAGCGTTTCGCACGCAAAATAAGGAGAACTT ] [+] EMBL BX616877 [ AAGTCAAGTAGAACTAGAACAAATATTTTAGTGCAATTTGTAGTGAGGCTTGCGGTGCGGTTTTGGGCCATTGTCCTCTTCTGTAGTCTTTACTCACGCAACCGAAGTAGGGG CGAGGGTGGCAGTTGCAGTGCAACTGCCATATTCAATAATGCTCTATAGTCCGCACTCCACACAGGAACGAATGCTAGCCACAGATGATAGTGAGAAAATTGGTTCTAGGAGTACACCGCATAGAACAATTAGCAATAGTAGTATACAGAACCGTATGTGTGTGT T TATCGATAGTAATTCCAGTGTTTTT CTGTGTTAAAACACAGATAGATTAAAAAAGACAGGGTTAAGTTACAGCTACACAGTAAGAGTGCCGAGGGGTTTAGTCGAATTGGCCGACATTTGCTCAAACAGGGCACAAGTAAAGTAAGAAACGTGTTCTTCCGTTCGTTTACTTTTGTGCATCGGATCACTTATTGGAAAAAGGAAATCCCGATTTCTACGAGAGACTGAGCAATTGATACAACTTAAGCTTACGTTCTCTACGAATTTATGTTCCCGAACAGCGTACCGCACGCAAGATAAGGAGAACTTAATTAGGGATTATTATTAAATTCCTTTCCATATGGGTTGTATGTTTCGTTTTGTGAAGTTTTCCTTCTTTGGGTGATATTTTACGCTAGGTTTTGCTGTTCAGATTGTTAATAACGAACGGAGTGTGTATtag ] consensusID : consensus_7019#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [GAATCGCCCGAGGTTAGTGCAATTTGTAGTGAGGCTTGCGGTGCGGTTTTGGGCCATTGTCCTCTTCTGTAGTCTTTACTCACGCAACCGAAGTAGGGGCGAGGGTGGCAGTTGCAGTGCAACTGCCATATTCAATAATGCTCTATAGTCCGCACTCCACACAGGAACGAATGCTAGCCACAGATGATAGTGAGAAAATTGGTTCTAGGAGTACACCGCATAGAACAATTAGCAATAGTAGTATACAGAACCGTATGTGTGTGTTTATCGAAAGTAATTCCAGTGTTTTTCTGTGTTAAAACACAGCATAGATTAAAAAAGACAGGGTTAAGTTACAGCTACACAGTAAGAGTGCCGAGGGGTTTAGTCGAATTGGCCGACATTTGCTCAAACAGGGCACAAGTAAAGTAAGAAACGTGTTCTTCCGTTCGTTTACTTTTGTGCATCGGATCACTTATTGGAAACAAGGAAATCCCGATTTCTACGAGAGACTGAGCAATTGATACAACTTAAGCTTACGTTCTCTACGAATTTATGTTCCCGAACAGCGTACCGCACGCAAGATAACGGAGAACTTAATTACNGGATTATTATTAAATTCCTTTCCATATGGGTTGTATGTTTCGTCGTGAAGTTTCCTTCTTTGGGTGATATTTCACGCTANGTTTGCTGTCAGATTGTTAATAACGAA] [+] EMBL AL930026 [GAATCGCCCGAGGTTAGTGCAATTTGTAGTGAGGCTTGCGGTGCGGTTTTGGGCCATTGTCCTCTTCTGTAGTCTTTACTCACGCAACCGAAGTAGGGGCGAGGGTGGCAGTTGCAGTGCAACTGCCATATTCAATAATGCTCTATAGTCCGCACTCCACACAGGAACGAATGCTAGCCACAGATGATAGTGAGAAAATTGGTTCTAGGAGTACACCGCATAGAACAATTAGCAATAGTAGTATACAGAACCGTATGTGTGTGTTTATCGAAAGTAATTCCAGTGTTTTTCTGTGTTAAAACACAGCATAGATTAAAAAAGACAGGGTTAAGTTACAGCTACACAGTAAGAGTGCCGAGGGGTTTAGTCGAATTGGCCGACATTTGCTCAAACAGGGCACAAGTAAAGTAAGAAACGTGTTCTTCCGTTCGTTTACTTTTGTGCATCGGATCACTTATTGGAAACAAGGAAATCCCGATTTCTACGAGAGACTGAGCAATTGATACAACTTAAGCTTACGTTCTCTACGAATTTATGTTCCCGAACAGCGTACCGCACGCAAGATAACGGAGAACTTAATTACNGGATTATTATTAAATTCCTTTCCATATGGGTTGTATGTTTCGTCGTGAAGTTTCCTTCTTTGGGTGATATTTCACGCTANGTTTGCTGTCAGATTGTTAATAACGAA] consensusID : consensus_7019#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [GAAAAAAAAACCCGCACTCCACACAGGAACGAATGCTAACCACAGATGATAGTGAGAAAATTGGTTCTAGGAGTACACCGCATAGAACAATTAGCAATAGTAGTATACAGAACCGTATGTGTGTGTGTCTATCGAAAGTAATTCCAGTGTTTTTCTGTGTTAAAACACAGATAGATTAAAAAAGACAGGGTTAAGTTACAGCTAAACAGTAAGAGTGCCGAGGGGTTTAGTCGAATTTGCCGACATTTGCTCAAACAGGGCACAAGTAAAGTAAGAAACGTGTTCTTCCGTTCGTTTACTTTTGTGCATCGGATCACTTATTGGAAAAAGGAAATCCCGTTTTCTACGAGAGACTGAGCAATTAATACAACCTAAGCTTACGTTCTCTACGAATTTATGTTCCCGAACAGCGTATCCGCACGCAAGATAAGGAGAAGCTTAATTAGGGATTATTATAAAATTCCTTTCCATATGGGTTGTATGTTTCGTTTTGTAAAGTTTTCCTTCTTTGGGTGATATTTTACGCTAGGTTTTGCTGTTCAGATTGTTAATAACGATCGGAGTGTGTATAGAGGATCAATTAAATTATTAATAAAAAGTAAAACCGT] [-] EMBL CNS08PNM [GAAAAAAAAACCCGCACTCCACACAGGAACGAATGCTAACCACAGATGATAGTGAGAAAATTGGTTCTAGGAGTACACCGCATAGAACAATTAGCAATAGTAGTATACAGAACCGTATGTGTGTGTGTCTATCGAAAGTAATTCCAGTGTTTTTCTGTGTTAAAACACAGATAGATTAAAAAAGACAGGGTTAAGTTACAGCTAAACAGTAAGAGTGCCGAGGGGTTTAGTCGAATTTGCCGACATTTGCTCAAACAGGGCACAAGTAAAGTAAGAAACGTGTTCTTCCGTTCGTTTACTTTTGTGCATCGGATCACTTATTGGAAAAAGGAAATCCCGTTTTCTACGAGAGACTGAGCAATTAATACAACCTAAGCTTACGTTCTCTACGAATTTATGTTCCCGAACAGCGTATCCGCACGCAAGATAAGGAGAAGCTTAATTAGGGATTATTATAAAATTCCTTTCCATATGGGTTGTATGTTTCGTTTTGTAAAGTTTTCCTTCTTTGGGTGATATTTTACGCTAGGTTTTGCTGTTCAGATTGTTAATAACGATCGGAGTGTGTATAGAGGATCAATTAAATTATTAATAAAAAGTAAAACCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7019#0 CCTGAACCATCTCTCTTTTGTAATTAATTTTCTCCTTCTGTACTTCGTACTCATACTACA 60 consensus_7019#2 ------------------------------------------------------------ consensus_7019#1 ------------------------------------------------------------ consensus_7019#0 TTGGGTCAAAACACAGAGCACATACTACCGCTGGCTGCTAAAATTATAAATAGGTAAACG 120 consensus_7019#2 ------------------------------------------------------------ consensus_7019#1 ------------------------------------------------------------ consensus_7019#0 AAAACAGAACAAACAAAAAAAAACCAAACAGTATCTTGGCCGTACTATGCTAAAGGCCGG 180 consensus_7019#2 ------------------------------------------------------------ consensus_7019#1 ------------------------------------------------------------ consensus_7019#0 ATTTAAGTCAAGTAGAACTAGAACAAATATTTTAGTGCAATTTGTAGTGAGGCTTGCGGT 240 consensus_7019#2 ------------------------------------------------------------ consensus_7019#1 ------------------GAATCGCCCGAGGTTAGTGCAATTTGTAGTGAGGCTTGCGGT 42 consensus_7019#0 GCGGTTTTGGGCCATTGTCCTCTTCTGTAGTCTTTACTCACGCAACCGAAGTAGGGGCGA 300 consensus_7019#2 ------------------------------------------------------------ consensus_7019#1 GCGGTTTTGGGCCATTGTCCTCTTCTGTAGTCTTTACTCACGCAACCGAAGTAGGGGCGA 102 consensus_7019#0 GGGTGGCAGTTGCAGTGCAACTGCCATATTCAATAATGCTCTATAGTCCGCACTCCACAC 360 consensus_7019#2 ------------------------------------GAAAAAAAAACCCGCACTCCACAC 24 consensus_7019#1 GGGTGGCAGTTGCAGTGCAACTGCCATATTCAATAATGCTCTATAGTCCGCACTCCACAC 162 * * ************* consensus_7019#0 AGGAACGAATGCTAGCCACAGATGATAGTGAGAAAATTGGTTCTAGGAGTACACCGCATA 420 consensus_7019#2 AGGAACGAATGCTAACCACAGATGATAGTGAGAAAATTGGTTCTAGGAGTACACCGCATA 84 consensus_7019#1 AGGAACGAATGCTAGCCACAGATGATAGTGAGAAAATTGGTTCTAGGAGTACACCGCATA 222 ************** ********************************************* consensus_7019#0 GAACAATTAGCAATAGTAGTATACAGAACCGTATGTGTGTGT--TTATCGAAAGTAATTC 478 consensus_7019#2 GAACAATTAGCAATAGTAGTATACAGAACCGTATGTGTGTGTGTCTATCGAAAGTAATTC 144 consensus_7019#1 GAACAATTAGCAATAGTAGTATACAGAACCGTATGTGTGTGT--TTATCGAAAGTAATTC 280 ****************************************** *************** consensus_7019#0 CAGTGTTTTTCTGTGTTAAAACACAG-ATAGATTAAAAAAGACAGGGTTAAGTTACAGCT 537 consensus_7019#2 CAGTGTTTTTCTGTGTTAAAACACAG-ATAGATTAAAAAAGACAGGGTTAAGTTACAGCT 203 consensus_7019#1 CAGTGTTTTTCTGTGTTAAAACACAGCATAGATTAAAAAAGACAGGGTTAAGTTACAGCT 340 ************************** ********************************* consensus_7019#0 ACACAGTAAGAGTGCCGAGGGGTTTAGTCGAATTGGCCGACATTTGCTCAAACAGGGCAC 597 consensus_7019#2 AAACAGTAAGAGTGCCGAGGGGTTTAGTCGAATTTGCCGACATTTGCTCAAACAGGGCAC 263 consensus_7019#1 ACACAGTAAGAGTGCCGAGGGGTTTAGTCGAATTGGCCGACATTTGCTCAAACAGGGCAC 400 * ******************************** ************************* consensus_7019#0 AAGTAAAGTAAGAAACGTGTTCTTCCGTTCGTTTACTTTTGTGCATCGGATCACTTATTG 657 consensus_7019#2 AAGTAAAGTAAGAAACGTGTTCTTCCGTTCGTTTACTTTTGTGCATCGGATCACTTATTG 323 consensus_7019#1 AAGTAAAGTAAGAAACGTGTTCTTCCGTTCGTTTACTTTTGTGCATCGGATCACTTATTG 460 ************************************************************ consensus_7019#0 GAAA-AAGGAAATCCCGTTTTCTACGAGAGACTGAGCAATTAATACAACCTAAGCTTACG 716 consensus_7019#2 GAAA-AAGGAAATCCCGTTTTCTACGAGAGACTGAGCAATTAATACAACCTAAGCTTACG 382 consensus_7019#1 GAAACAAGGAAATCCCGATTTCTACGAGAGACTGAGCAATTGATACAACTTAAGCTTACG 520 **** ************ *********************** ******* ********** consensus_7019#0 TTCTCTACGAATTTATGTTCCCGAACAGCGTATC-GCACGCAAGATAAGGAGAA-CTTAA 774 consensus_7019#2 TTCTCTACGAATTTATGTTCCCGAACAGCGTATCCGCACGCAAGATAAGGAGAAGCTTAA 442 consensus_7019#1 TTCTCTACGAATTTATGTTCCCGAACAGCGTACC-GCACGCAAGATAACGGAGAACTTAA 579 ******************************** * ************* * * ***** consensus_7019#0 TTA-GGGATTATTATAAAATTCCTTTCCATATGGGTTGTATGTTTCGTTTTGTAAAGTTT 833 consensus_7019#2 TTA-GGGATTATTATAAAATTCCTTTCCATATGGGTTGTATGTTTCGTTTTGTAAAGTTT 501 consensus_7019#1 TTACNGGATTATTATTAAATTCCTTTCCATATGGGTTGTATGTTTCGTC--GTGAAGTTT 637 *** ********** ******************************** ** ****** consensus_7019#0 TCCTTCTTTGGGTGATATTTTACGCTAGGTTTTGCTGTTCAGATTGTTAATAACGATCGG 893 consensus_7019#2 TCCTTCTTTGGGTGATATTTTACGCTAGGTTTTGCTGTTCAGATTGTTAATAACGATCGG 561 consensus_7019#1 -CCTTCTTTGGGTGATATTTCACGCTANGTTT-GCTGT-CAGATTGTTAATAACGAA--- 691 ******************* ****** **** ***** ***************** consensus_7019#0 AGTGTGTATAGAGGATCAATTAAATTATTAATAAAAAGTAAAACCGTTTACCGTTTTATC 953 consensus_7019#2 AGTGTGTATAGAGGATCAATTAAATTATTAATAAAAAGTAAAACCGT------------- 608 consensus_7019#1 ------------------------------------------------------------ consensus_7019#0 CAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGC 993 consensus_7019#2 ---------------------------------------- consensus_7019#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||