These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7027#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 949 fasta sequence [GATCGCCCGAGGCAGGTGTATGGGTTGATCGCGGGTGTTGTTTCCGATCGAAGTCAGTCCATTTATTGTGCCGGCTTCAATCATTCCTGCGCTGCTGTTTAGTGGGTTCTTTATACGGTACAACGAGCTGCTGGATTTCTTTAAGCCACTCACGCTGGTAAGCTACTTTCGGTACGGGTTTGAGGGGTTGGTGCAGGCTACGTACGGCCACAACCGGACGGAGGTGGGTTGTAGTGAGATCTTTGCTACTATCGCAAAACGAGTAAAATCCTGGAAGCCCTCCACATGGAACCGAACCGCTACTGGACGGATGTGCTCGGGCTTAGCATCTGGATTGCGTTCCTGCACATCGTGCTGTATCTGAGCCTGCGGCTACGACTCCGATGGAACCGTTGAGGGATGTAGAAAGGTAGCAAAAGAAGTAGAAAAAAGATAAAAAAGCAACCTCCATCACAAATTACAAAGTAAAGTTCGAGTTCTCTTCATTGGCCTTACTACTAGTGTTACGTTGCAAATAGATAATCCAGCTCTCCCAAGGGTAACGCGCACACATGGAATGTGTGTTCCGTCGTAGTTGCGCTGCAACAGCGCAGCACACGGGCGGTGTAGTATTTGCGCAAGCTGCAGGAGCGATATTTCATTCTGGCTAGCGTAAGCGGCAGCTATGAATGAATAATTTTGTAGAATATTAACCACGTCAACGCGGGCGCAAGTCAACAACATCTAGCGCGAAACACGCGTTTCGTATAATGTGACAGAATAATCCCCCAACCTCCAGGTGGGTGGAGGATGCAACTCATAGCTAGTTGTTTAACTTGATAAGCTAACGTTAAGCAGTCTAAGAACGGTGGCAGATCTATTATGAATCATGCAGTTTTCTTGTGAAAGTGTGTGTCTGTGTGGGGAAGATGAAAAAAAGCAAATAAAGTGTATTTATCGACCAAATGTT] [+] EMBL AL930196 [GATCGCCCGAGGCAGGTGTATGGGTTGATCGCGGGTGTTGTTTCCGATCGAAGTCAGTCCATTTATTGTGCCGGCTTCAATCATTCCTGCGCTGCTGTTTAGTGGGTTCTTTATACGGTACAACGAGCTGCTGGATTTCTTTAAGCCACTCACGCTGGTAAGCTACTTTCGGTACGGGTTTGAGGGGTTGGTGCAGGCTACGTACGGCCACAACCGGACGGAGGTGGGTTGTAGTGAGATCTTTGCTACTATCGCAAAACGAGTAAAATCCTGGAAGCCCTCCACATGGAACCGAACCGCTACTGGACGGATGTGCTCGGGCTTAGCATCTGGATTGCGTTCCTGCACATCGTGCTGTATCTGAGCCTGCGGCTACGACTCCGATGGAACCGTTGAGGGATGTAGAAAGGTAGCAAAAGAAGTAGAAAAAAGATAAAAAAGCAACCTCCATCACAAATTACAAAGTAAAGTTCG ] [+] EMBL BM657581 [ ccgGGGATGTAGAAAGGTAGCAAAAGTAGTAGAAAAAAGATAAAAAAGCAACCTCCATCACAAATTACAAAGTAATGTTAGAGTTCTCTTCATTGGCCTTACTACTAGTGTTACGTTGCAAATAGATAATCCAGCTCTCCCAAGGGTAACGCGCACACATGGAATGTGTGTTCCGTCGTAGTTGCGCTGCAACAGCGCAGCACACGGGCGGTGTAGTATTTGCGCAAGCTGCAGGAGCGATATTTCATTCTGGCTAGCGTAAGCGGCAGCTATGAATGAATAATTTTGTAGAATATTAACCACGTCAACGCGGGCGCAAGTCAACAACATCTAGCGCGAAACACGCGTTTCGTATAATGTGACAGAATAATCCCCCAACCTCCAGGTGGGTGGAGGATGCAACTCATAGCTAGTTGTTTAACTTGATAAGCTAACGTTAAGCAGTCTAAGAACGGTGGCAGATCTATTATGAATCATGCAGTTTTCTTGTGAAAGTGTGTGTCTGTGTGGGGAAGATGAAAAAAAGCAAATAAAGTGTATTTATCGACCAAATGTT] consensusID : consensus_7027#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 827 fasta sequence [CCGGTACTTTCTCAGCGGGCAGCTGTACGAGACGGATCGTGTGTTGATGTTCTGGGGCATCTGCGCGTTGTTTGGGTGGCTGGCGCAGGTGTATGGGTTGATCGCGGGGTGTTTGTTTCCGATCGAAGTCAGTCCATTTATTGTGCCGGCTTCAATCATTCCTGCGCTACTGTTTAGTGGGTTCTTTATACGGTACAACGAGCTGCTGGATTTCTTTAAGCCACTCACGCTGGTAAGCTACTTTCGGTACGGGTTTGAGGGGTTAGTGCAGGCTACGTACGGACACAACCGGACGGAGGTGGGTTGTAGTGAGATCTTTTGCTACTATCGCAAAACGAGTAAAATCCTGGAAGCCCTCCACATGGAACCGAACCGCTACTGGACGGATGTGCTCGGGCTTAGCATCTGGATTGCGTTCCTGCACATCGTGCTGTATCTGAGCCTGCGGCTACGACTCCGATGGAACCGTTGAGGGATGTAGAAAGGTAGCAAAAGAAGTGGAAAAACGATAAAAAAGCAACCACCATCACAAATTACAAAGTAATGTTAGAGTTCTCTTCATTGGCCTTACTACTAGTGTTACGTTGCAAATAGATAATCCAGCTCTCCCAAGGGTAACGCGCACACATGGAATGTGTGTTCCGTCGTAGTTGCGCTGCAACAGCGCAGCACACGGGCGGTGTAGTATTTGCGCAAGCTGCAGGAGCGATATTTCATTCTGGNTAGCGTAAGCGGCAGCTATGAATGAATAATTTTGTAGAATATTAACCACGTCAACGCGGGCGCAAGTCAACAACATCTAGCGCGAATGTGACAGTGTATATGNG] [+] EMBL BM649745 [CCGGTACTTTCTCAGCGGGCAGCTGTACGAGACGGATCGTGTGTTGATGTTCTGGGGCATCTGCGCGTTGTTTGGGTGGCTGGCGCAGGTGTATGGGTTGATCGCGGGGTGTTTGTTTCCGATCGAAGTCAGTCCATTTATTGTGCCGGCTTCAATCATTCCTGCGCTACTGTTTAGTGGGTTCTTTATACGGTACAACGAGCTGCTGGATTTCTTTAAGCCACTCACGCTGGTAAGCTACTTTCGGTACGGGTTTGAGGGGTTAGTGCAGGCTACGTACGGACACAACCGGACGGAGGTGGGTTGTAGTGAGATCTTTTGCTACTATCGCAAAACGAGTAAAATCCTGGAAGCCCTCCACATGGAACCGAACCGCTACTGGACGGATGTGCTCGGGCTTAGCATCTGGATTGCGTTCCTGCACATCGTGCTGTATCTGAGCCTGCGGCTACGACTCCGATGGAACCGTTGAGGGATGTAGAAAGGTAGGAAAAGAAGTGGAAAAACGATAAAAAAGCAACCACCATCACAAATTACAAAGTAATGTTAGAGTTCTCTTCATT ] [+] EMBL BX629008 [ AGACGGATCGCGTGCTGATGTTCTGGGGCATCTGCGCGCTGTTTGGGTGGCTGGCGCAGGTGTATGGGTTGATCGCGGGGTGTTTGTTTCCGATCGAAGTCAGTCCATTTATTGTGCCGGCTTCAATCATTCCTGCGCTGCTGTTTAGTGGGTTCTTTATACGGTACAACGAGCTGCTGGATTTCTTTAAGCCACTCACGCTGGTAAGCTACTTTCGGTACGGGTTTGAGGGGTTGGTGCAGGCTACGTACGGCCACAACCGGACGGAGGTGGGTTGTAGTGAGATCTTTTGCTACTATCGCAAAACGAGTAAAATCCTGGAAGCCCTCCACATGGAACCGAACCGCTACTGGACGGATGTGCTCGGGCTTAGCATCTGGATTGCGTTCCTGCACATCGTGCTGTATCTGAGCCTGCGGCTACGACTCCGATGGAACCGTTGAGGGATGTAGAAAGGTAGCAAAAGAAGTAGAAAAAAGATAAAAAAGCAACCTCCATCACAAATTACAAAGTAAAGTTCGAGTTTTCTTCATTGGCCTTACTACTAGTGTTACGTTGCAAATAGATAATCCAGCTCTCCCAAGGGTAACGCGCACACATGGAATGTGTGTTCCGTCGTAGTTGCGCTGCAACAGCGCAGCACACGGGCGGTGTAGTATTTGCGCAAGCTGCAGGAGCGAT ] [+] EMBL BX620393 [ CGCAGGTGTATGGGTTGATCGCGGGGTGTTTGTTTCCGATCGAAGTCAGTCCATTTATTGTGCCGGCTTCAATCATTCCTGCGCTACTGNTTAGTGGGTTCTTTATACGGTACAACGAGCTGCTGGATTTCTTTAAGCCACTCACGCTGGTAAGCTACTTTCGGTACGGGTTTGAGGGGTTAGTGCAGGCTACGTACGGACACAACCGGACGGAGGTGGGTTGTAGTGAGATCTTTTGCTACTATCGCAAAACGAGTAAAATCCTGGAAGCCCTCCACATGGAACCGAACCGCTACTGGACGGATGTGCTCGGGCTTAGCATCTGGATTGCGTTCCTGCACATCGTGCTGTATCTGAGCCTGCGGCTACGACTCCGATGGAACCGTTGAGGGATGTAGAAAGGTAGCAAAAGAAGTGGAAAAACGATAAAAAAGCAACCACCATCACAAATTACAAAGTAATGTTAGAGTTCTCTTCATTGGCCTTACTACTAGTGTTACGTTGCAAATGGATAATCCAGCTCTACCAAGGGTAACGCGCACACATGGAATGTGTGTTCCGTCGTAGTTGCGCTGCAACAGCGCAGCACACGGGCGGTGTAGTATTTGCGCAAGCTGCAGGAGCGATATTTCATTCTGGNTAGCGTAAGCGGCAGCTATGAATGAATAATTTTGTAGAATATTAACCACGTCAACGCGGGCGCAAGTCAACAACATCTAGCGCGAATGTGACAGTGTATATGNG] consensusID : consensus_7027#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 119 fasta sequence [CCGAGCGCGAATGTGACAGTGTATAATGTGACAGAATAATCCCCCAACCTCCAGGTGGGTGGAGGATGCAACTCATGGCTAGTTGTTTAACTTGATAAGCTAACGTTAAGCAGTCTAAG] [+] EMBL BM586966 [CCGAGCGCGAATGTGACAGTGTATAATGTGACAGAATAATCCCCCAACCTCCAGGTGGGTGGAGGATGCAACTCATGGCTAGTTGTTTAACTTGATAAGCTAACGTTAAGCAGTCTAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7027#0 ------------------------------------------------------------ consensus_7027#1 CCGGTACTTTCTCAGCGGGCAGCTGTACGAGACGGATCGTGTGTTGATGTTCTGGGGCAT 60 consensus_7027#2 ------------------------------------------------------------ consensus_7027#0 -------------GATCGCCCGAGGCAGGTGTATGGGTTGATCGCGGG-TGTT-GTTTCC 45 consensus_7027#1 CTGCGCGTTGTTTGGGTGGCTGGCGCAGGTGTATGGGTTGATCGCGGGGTGTTTGTTTCC 120 consensus_7027#2 ------------------------------------------------------------ consensus_7027#0 GATCGAAGTCAGTCCATTTATTGTGCCGGCTTCAATCATTCCTGCGCTGCTGTTTAGTGG 105 consensus_7027#1 GATCGAAGTCAGTCCATTTATTGTGCCGGCTTCAATCATTCCTGCGCTACTGTTTAGTGG 180 consensus_7027#2 ------------------------------------------------------------ consensus_7027#0 GTTCTTTATACGGTACAACGAGCTGCTGGATTTCTTTAAGCCACTCACGCTGGTAAGCTA 165 consensus_7027#1 GTTCTTTATACGGTACAACGAGCTGCTGGATTTCTTTAAGCCACTCACGCTGGTAAGCTA 240 consensus_7027#2 ------------------------------------------------------------ consensus_7027#0 CTTTCGGTACGGGTTTGAGGGGTTGGTGCAGGCTACGTACGGCCACAACCGGACGGAGGT 225 consensus_7027#1 CTTTCGGTACGGGTTTGAGGGGTTAGTGCAGGCTACGTACGGACACAACCGGACGGAGGT 300 consensus_7027#2 ------------------------------------------------------------ consensus_7027#0 GGGTTGTAGTGAGATCTTT-GCTACTATCGCAAAACGAGTAAAATCCTGGAAGCCCTCCA 284 consensus_7027#1 GGGTTGTAGTGAGATCTTTTGCTACTATCGCAAAACGAGTAAAATCCTGGAAGCCCTCCA 360 consensus_7027#2 ------------------------------------------------------------ consensus_7027#0 CATGGAACCGAACCGCTACTGGACGGATGTGCTCGGGCTTAGCATCTGGATTGCGTTCCT 344 consensus_7027#1 CATGGAACCGAACCGCTACTGGACGGATGTGCTCGGGCTTAGCATCTGGATTGCGTTCCT 420 consensus_7027#2 ------------------------------------------------------------ consensus_7027#0 GCACATCGTGCTGTATCTGAGCCTGCGGCTACGACTCCGATGGAACCGTTGAGGGATGTA 404 consensus_7027#1 GCACATCGTGCTGTATCTGAGCCTGCGGCTACGACTCCGATGGAACCGTTGAGGGATGTA 480 consensus_7027#2 ------------------------------------------------------------ consensus_7027#0 GAAAGGTAGCAAAAGAAGTAGAAAAAAGATAAAAAAGCAACCTCCATCACAAATTACAAA 464 consensus_7027#1 GAAAGGTAGCAAAAGAAGTGGAAAAACGATAAAAAAGCAACCACCATCACAAATTACAAA 540 consensus_7027#2 ------------------------------------------------------------ consensus_7027#0 GTAAAGTTCGAGTTCTCTTCATTGGCCTTACTACTAGTGTTACGTTGCAAATAGATAATC 524 consensus_7027#1 GTAATGTTAGAGTTCTCTTCATTGGCCTTACTACTAGTGTTACGTTGCAAATAGATAATC 600 consensus_7027#2 ------------------------------------------------------------ consensus_7027#0 CAGCTCTCCCAAGGGTAACGCGCACACATGG-AATGTGTGTTCCGTCGTAGTTGCGCTGC 583 consensus_7027#1 CAGCTCTCCCAAGGGTAACGCGCACACATGG-AATGTGTGTTCCGTCGTAGTTGCGCTGC 659 consensus_7027#2 ---------------CCGAGCGCGAATGTGACAGTGTATAATGTGACAGAATAATCCCCC 45 **** * ** * *** * * * * * * * * consensus_7027#0 AACAGCGCAGCACACGGGCGGTGTAGTATTTGCGCAAGCTGCAGGAGC-GATAT-TTCAT 641 consensus_7027#1 AACAGCGCAGCACACGGGCGGTGTAGTATTTGCGCAAGCTGCAGGAGC-GATAT-TTCAT 717 consensus_7027#2 AACCTCCAGGTGGGTGGAGGATGCAACTCATG-GCTAGTTGTTTAACTTGATAAGCTAAC 104 *** * * ** * ** * ** ** ** ** * **** * * consensus_7027#0 TCTGGCTAGCGTAAGCGGCAGCTATGAATGAATAATTTTGTAGAATATTAACCACGTCAA 701 consensus_7027#1 TCTGGNTAGCGTAAGCGGCAGCTATGAATGAATAATTTTGTAGAATATTAACCACGTCAA 777 consensus_7027#2 GTTAAGCAGTCTAAG--------------------------------------------- 119 * ** **** consensus_7027#0 CGCGGGCGCAAGTCAACAACATCTAGCGCGAAACACGCGTTTCGTATAATGTGACAGAAT 761 consensus_7027#1 CGCGGGCGCAAGTCAACAACATCTAGCGCGAATGTGACAGTGTATATGNG---------- 827 consensus_7027#2 ------------------------------------------------------------ consensus_7027#0 AATCCCCCAACCTCCAGGTGGGTGGAGGATGCAACTCATAGCTAGTTGTTTAACTTGATA 821 consensus_7027#1 ------------------------------------------------------------ consensus_7027#2 ------------------------------------------------------------ consensus_7027#0 AGCTAACGTTAAGCAGTCTAAGAACGGTGGCAGATCTATTATGAATCATGCAGTTTTCTT 881 consensus_7027#1 ------------------------------------------------------------ consensus_7027#2 ------------------------------------------------------------ consensus_7027#0 GTGAAAGTGTGTGTCTGTGTGGGGAAGATGAAAAAAAGCAAATAAAGTGTATTTATCGAC 941 consensus_7027#1 ------------------------------------------------------------ consensus_7027#2 ------------------------------------------------------------ consensus_7027#0 CAAATGTT 949 consensus_7027#1 -------- consensus_7027#2 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||