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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7030#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 928 fasta sequence
[TTCATTTTTGCCGTACTCGTATGTTTCCATTTTCCCATGATTTACACTCCACTGTTTTCCCGCACCCAGTCACGAACGCTGGCTACGCGTCCATATACACCTGGATATCCTGGCTGAGCGCATCCATAGCCCCACGAGACCACACCGACCAGCTTGCCATCAGCAACCAGCGGACCGCCGGAATCTCCCTGGCAGGCGTCCTTTCCACCCTGCTGGTATCCGGCACACAGCATACGATCGGTGATTTCTCCGAACCACATGTAGGCATCGCTACAATCTTCATGGCTCACGGTCGGTACGTTGGCAGCCCGCAGGAAATCGCTAGACTCGACGGCACTTTGGGTGTTGCCCCAGCCAGAAACGGTGGCCATGGTTCCTGGCTCGACAGGTTCCTCATGCTCTGGAAGTTCGACCGGTTGCACCATATCGCTGAAGGTAAGCTCAGTCTCCAGCTCCATCAGCGAGAAGTCGTAGTCGATTGTGTTACCATCGTACTGCGGGTGCTCGACAGTTCGCAGTACTCCGACAAGAGTACCTCCAGTAGCGTGTTCCGATGAGCCCAGGCGCACGGCGAGGCTGCTGGGATCCAAACCCTGGGTGCAGTGGGCAGCAGTAAGGACCCACTTGTTGTCCAGCACGGAGCCGCCGCAACGGTGGCTGTTGAAGTATTGCAGGGACACCTGAAACGGAGCATCCGACACGTCGATCTGGAATCCACCGACGACGCGATGACCGTTGCTGCCGCGATGAAGCCGAGGCAGGAATCTGGGCAGCAGCGGATGGACCAAGTTATGCCGCCCGGATGGTTGTTCTTGCGCACAAGCGACCACCGCAACCAGAACAGCCAGCAGGAGGATTGCAATCTTGTTCGACATCTTGTCAGGCACTCGTATCCAGTAGGCCAACAGTTCTCGAGGAATTCCGCCGC]
[+] EMBL CNS09BW8 [TTCATTTTTGCCGTACTCGTATGTTTCCATTTTCCCATGATTTACACTCCACTGTTTTCCCGCACCCAGTCACGAACGCTGGCTACGCGTCCATATACACCTGGATATCCTGGCTGAGCGCATCCATAGCCCCACGAGACCACACCGACCAGCTTGCCATCAGCAACCAGCGGACCGCCGGAATCTCCCTGGCAGGCGTCCTTTCCACCCTGCTGGTATCCGGCACACAGCATACGATCGGTGATTTCTCCGAACCACATGTAGGCATCGCTACAATCTTCATGGCTCACGGTCGGTACGTTGGCAGCCCGCAGGAAATCGCTAGACTCGACGGCACTTTGGGTGTTGCCCCAGCCAGAAACGGTGGCCATGGTTCCTGGCTCGACAGGTTCCTCATGCTCTGGAAGTTCGACCGGTTGCACCATATCGCTGAAGGTAAGCTCAGTCTCCAGCTCCATCAGCGAGAAGTCGTAGTCGATTGTGTTACCATCGTACTGCGGGTGCTCGACAGTTCGCAGTACTCCGACAAGAGTACCTCCAGTAGCGTGTTCCGATGAGCCCAGGCGCACGGCGAGGCTGCTGGGATCCAAACCCTGGGTGCAGTGGGCAGCAGTAAGGACCCACTTGTTGTCCAGCACGGAGCCGCCGCAACGGTGGCTGTTGAAGTATTGCAGGGACACCTGAAACGGAGCATCCGACACGTCGATCTGGAATCCACCGACGACGCGATGACCGTTGCTGCCGCGATGAAGCCGAGGCAGGAATCTGGGCAGCAGCGGATGGACCAAGTTATGCCGCCCGGATGGTTGTTCTTGCGCACAAGCGACCACCGCAACCAGAACAGCCAGCAGGAGGATTGCAATCTTGTTCGACATCTTGTCAGGCACTCGTATCCAGTAGGCCAACAGTTCTCGAGGAATTCCGCCGC]
consensusID : consensus_7030#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 742 fasta sequence
[CATCCAATCGAACGCCAAGGTGCTGTCGAACATGATCAAGCAGAAGCGCAAGGAGAAGGTGTTTAAGGTGATCCGGAGCGGCAAGACGAAGCGCAAGGCCTGGAAGCGTATGGTCACGAAGGTGACGTACGTCGGCGAGAACTTTACCCGCAAACCGCCCAAGTACGAACGCTTCATCCGACCGATGGCGCTGCGTATGAACAAGGCGCACGTGACGCACCCGGAGCTGAAGGCCACCTTCCATTTGCCGATCATTGGCGTGAAGAAGAATCCCTCCTCGCCGATGTACACGAGCTTGGGCGTCATCACCAAGGGTACGGTGATTGAGGTGAACATTTCCGAGCTCGGTCTCGTCACACAGTCCGGCAAGGTGGTGTGGGGAAAGTACGCCCAGGTGACGAACAATCCGGAGAACGACGGTTGCATCAACGCGGTACTGCTGGTGTAAAGCAGCGGCGGAGGAAGCGGGAGGGGAAAGGGATGATATATTAAGGGGGGGAGANGGAATTGGTCTGAATTGGGTTGTCGCATCCGGTTAAAGACGGACTGCGTAATTCTTCAGCAGTGATAGTGCGCTAGGTATTAAGCTTTTCTTATCTAAGAGCAGGGGATAAGTTCGAATCAAACAAATCTCTGGCGTAAAGGAGAAGGCACAGGATCAGGATTTTTGTACNAACGAAACAACAAGCCCTTGAATAANAAAGGACCCGGTTGAAATATGGCGCGCTACATTGTTTAGCGA]
[+] EMBL BX627684 [CATCCAATCGAACGCCAAGGTGCTGTCGAACATGATCAAGCAGAAGCGCAAGGAGAAGGTGTTTAAGGTGATCCGGAGCGGCAAGACGAAGCGCAAGGCCTGGAAGCGTATGGTCACGAAGGTGACGTACGTCGGCGAGAACTTTACCCGCAAACCGCCCAAGTACGAACGCTTCATCCGACCGATGGCGCTGCGTATGAACAAGGCGCACGTGACGCACCCGGAGCTGAAGGCCACCTTCCATTTGCCGATCATTGGCGTGAAGAAGAATCCCTCCTCGCCGATGTACACGAGCTTGGGCGTCATCACCAAGGGTACGGTGATTGAGGTGAACATTTCCGAGCTCGGTCTCGTCACACAGTCCGGCAAGGTGGTGTGGGGAAAGTACGCCCAGGTGACGAACAATCCGGAGAACGACGGTTGCATCAACGCGGTACTGCTGGTGTAAAGCAGCGGCGGAGGAAGCGGGAGGGGAAAGGGATGATATATTAAGGGGGGGAGANGGAATTGGTCTGAATTGGGTTGTCGCATCCGGTTAAAGACGGACTGCGTAATTCTTCAGCAGTGATAGTGCGCTAGGTATTAAGCTTTTCTTATCTAAGAGCAGGGGATAAGTTCGAATCAAACAAATCTCTGGCGTAAAGGAGAAGGCACAGGATCAGGATTTTTGTACNAACGAAACAACAAGCCCTTGAATAANAAAGGACCCGGTTGAAATATGGCGCGCTACATTGTTTAGCGA]
consensusID : consensus_7030#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 714 fasta sequence
[CCGATTTTTGTCAGCGTAAATCGTAACATCCCCACAGATAACCGAAAATGTGTGACGACGATGTTGCCGCGCTGGTCGTAGACAATGGATCCGGTATGTGCAAGGCCGGGTTCGCCGGGGACGATGCGCCACGTGCCGTGTTCCCATCAGGGCGTGATGGTCGGCATGGGCCAGAAGGACTCGTACGTCGGCGATGAGGCCCAGAGCAAGCGAGGTATCCTGACGCTGAAGTACCCGATCGAGCACGGTATCATCACGAACTGGGACGATATGGAGAAGATCTGGCACCACACGTTCTACAATGAGCTGCGCGTGGCTCCGGAGGAGCACCCGGTCCTACTGACGGAGGCCCCGCTCAACCCGAAGGCGAACCGTGAGAAGATGACGCAGATCATGTTCGAAACCTTCAACTCGCCGGCTATGTATGTGGCCATCCAGGCTGTGCTGTCGTTGTACGCTTCTGGCCGTACCACCGGTATTGTGCTGGACTCTGGTGATGGTGTGTCGCACACGGTGCCCATCTACGAAGGTTACGCTCTTCCTCACGCCATCCTGCGTCTGGATCTGGCCGGTCGCGATCTGACCGACTACCTGATGAAGATCCTGACCGAGCGAGGCTACTCGTTCACTACCACCGCTGAGCGGGAAATCGTGCGTGACATCAAGGAGAAGCTGTGCTACGTTGCGCTGGACTTTGAGCAGGAGATGGCAACT]
[+] EMBL BM618932 [CCGATTTTTGTCAGCGTAAATCGTAACATCCCCACAGATAACCGAAAATGTGTGACGACGATGTTGCCGCGCTGGTCGTAGACAATGGATCCGGTATGTGCAAGGCCGGGTTCGCCGGGGACGATGCGCCACGTGCCGTGTTCCCATCAGGGCGTGATGGTCGGCATGGGCCAGAAGGACTCGTACGTCGGCGATGAGGCCCAGAGCAAGCGAGGTATCCTGACGCTGAAGTACCCGATCGAGCACGGTATCATCACGAACTGGGACGATATGGAGAAGATCTGGCACCACACGTTCTACAATGAGCTGCGCGTGGCTCCGGAGGAGCACCCGGTCCTACTGACGGAGGCCCCGCTCAACCCGAAGGCGAACCGTGAGAAGATGACGCAGATCATGTTCGAAACCTTCAACTCGCCGGCTATGTATGTGGCCATCCAGGCTGTGCTGTCGTTGTACGCTTCTGGCCGTACCACCGGTATTGTGCTGGACTCTGGTGATGGTGTGTCGCACACGGTGCCCATCTACGAAGGTTACGCTCTTCCTCACGCCATCCTGCGTCTGGATCTGGCCGGTCGCGATCTGACCGACTACCTGATGAAGATCCTGACCGAGCGAGGCTACTCGTTCACTACCACCGCTGAGCGGGAAATCGTGCGTGACATCAAGGAGAAGCTGTGCTACGTTGCGCTGGACTTTGAGCAGGAGATGGCAACT]
consensusID : consensus_7030#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 274 fasta sequence
[TCATTGCCTTGCTTGCTTTGCTTCTTTATTGCATATAATTACAAACCCGTCAGGATCCAAGCTTTCTCGGCCGAGGCCTGGGGGGCACCCGACGCAACCGACTGGCCATCGTCGACTGGGGCATCCTGGCACGAAAGCGACGGGAACTTCTGGTACAGGGCAGCGCGATACTTCGGATGGCTGAGGCCGTACACGATCGGGTTGTAGACGGCGTTGGCCTTGGCGAACAGCGAGCCCCAAATGGTAAAAAAAAAACTGATCGGGGCCGCCTTGA]
[+] EMBL CNS08VIH [TCATTGCCTTGCTTGCTTTGCTTCTTTATTGCATATAATTACAAACCCGTCAGGATCCAAGCTTTCTCGGCCGAGGCCTGGGGGGCACCCGACGCAACCGACTGGCCATCGTCGACTGGGGCATCCTGGCACGAAAGCGACGGGAACTTCTGGTACAGGGCAGCGCGATACTTCGGATGGCTGAGGCCGTACACGATCGGGTTGTAGACGGCGTTGGCCTTGGCGAACAGCGAGCCCCAAATGGTAAAAAAAAAACTGATCGGGGCCGCCTTGA]
consensusID : consensus_7030#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 167 fasta sequence
[GGCCGTCCGCGGACGCGTGGGTTTTTTTTTTTTTTTTTTAATTATTTTAATAATTTTC-TTTAAATAAAATTATATTTTTTATATTAGGTCCTTTCGTACTACAATATAATAATTTATTAAAGATAGAAACCAACCTGGCTTACGCCGGTTTGCGGACGCGTGGGCGG]
[+] EMBL BM629615 [GGCCGTCCGCGGACGCGTGGGTTTTTTTTTTTTTTTTTTAATTATTTTAATAATTTTC TTTAAATAAAATTATATTTTTTATATTAGGTCCTTTCGTACTACAAT ]
[-] EMBL BM636553 [ aAATTATTTTAATAATTTTCATTTAAATAAAATTATATTTTTTATATTAGGTCCTTTCGTACTACAATATAATAATTTATTAAAGATAGAAACCAACCTGGCTTACGCCGGTTTGCGGACGCGTGGGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7030#3 ------------------------------------------------------------
consensus_7030#4 ------------------------------------------------------------
consensus_7030#1 ------------------------------------------------------------
consensus_7030#2 ------------------------------------------------------------
consensus_7030#0 TTCATTTTTGCCGTACTCGTATGTTTCCATTTTCCCATGATTTACACTCCACTGTTTTCC 60
consensus_7030#3 ------------------------------------------------------------
consensus_7030#4 ------------------------------------------------------------
consensus_7030#1 ------------------------------------------------------------
consensus_7030#2 ------------------------------------------------------------
consensus_7030#0 CGCACCCAGTCACGAACGCTGGCTACGCGTCCATATACACCTGGATATCCTGGCTGAGCG 120
consensus_7030#3 ------------------------------------------------------------
consensus_7030#4 ------------------------------------------------------------
consensus_7030#1 ----------CATCCAATCGAACGCCAAGGTGCTGTCGAACATGATCAAGCAGAAGCGCA 50
consensus_7030#2 ------------------------------------------------------------
consensus_7030#0 CATCCATAGCCCCACGAGACCACACCGACCAGCTTGCCATCAGCAACCAGCGGACCGCCG 180
consensus_7030#3 ------------------------------------------------------------
consensus_7030#4 ------------------------------------------------------------
consensus_7030#1 AGGAGAAGGTGTTTAAGGTGATCCGGAGCGGCAAGACGAAGCGCAAGGCCTGGAAGCGTA 110
consensus_7030#2 -----------------------------------------------CCGATTTTTGTCA 13
consensus_7030#0 GAATCTCCCTGGCAGGCGTCCTTTCCACCCTGCTGGTATCCGGCACACAGCATACGATCG 240
consensus_7030#3 ------------------------------------------------------------
consensus_7030#4 ------------------------------------------------------------
consensus_7030#1 TGGTCACGAAGGTGACGTACGTCGGCGAGAACTTTACCCGCAAACCGCCCAAGTACGAA- 169
consensus_7030#2 GCGTAAATCGTAACATCCCCACAGATAACCGAAAATGTGTGACGACGATGTTGCCGCGC- 72
consensus_7030#0 GTGATTTCTCCGAACCACATGTAGGCATCGCTACAATCTTCATGGCTCACGGTCGGTACG 300
consensus_7030#3 ------------------------------------------------TCATTGCCTTGC 12
consensus_7030#4 ------------------------------------------------------------
consensus_7030#1 CGCTTCATCCGACCGATGGCGCTGCGTATGAACAAGGCGCACGTGACGCACCCGGAGCTG 229
consensus_7030#2 TGGTCGTAGACAATGGATCCGGTATGTGCAAGGCCGGGTTCGCCGGGGACGATGCGCCAC 132
consensus_7030#0 TTGGCAGCCCGCAGGAAATCGCTAGACTCGACGGCACTTTGGGTGTTGCCCCAGCCAGAA 360
consensus_7030#3 TTGCTTTGCTT--CT-TTATTGCATATAATTACAAACCCGTCAGGATCCAAGCTTTCTCG 69
consensus_7030#4 -----------------------GGCCGTCCGCGGACGCGTGGGTTTTTTTTTTTTTTTT 37
consensus_7030#1 AAGGCCACCTT--CC-ATTTGCCGATCATTGGCGTGAAGAAGAATCCCTCCTCGCCGATG 286
consensus_7030#2 GTGCCGTGTTC--CCATCAGGGCGTGATGGTCGGCATGGGCCAGAAGGACTCGTACGTCG 190
consensus_7030#0 ACGGTGGCCATGGTTCCTGGCTCGACAGGTTCCTCATGCTCTGGAAGTTCGACCGGTTGC 420
consensus_7030#3 GCCGAGGCCTGGGGGGCACCCGACGC----------AACCG--ACTGGCCATCGTCGACT 117
consensus_7030#4 TTAATTATTTTAATAATTTTCTTTA-----------AATAA--AATTATATTTTTTATAT 84
consensus_7030#1 TACACGAGCTTGGGCGTCATCACCAAGGGTACGGTGATTGA--GGTGAACATTTCCGAGC 344
consensus_7030#2 GCGATGAGGCCCAGAGCAAGCGAGGTA--TCCTGACGCTGA--AGTACCCGATCGAGCAC 246
consensus_7030#0 ACCATATCGCTGAAGGTAAGCTCAGTCTCCAGCTCCATCAGCGAGAAGTCGTAGTCGATT 480
*
consensus_7030#3 GGGGCATCCTGGCACGA---AAGCGACGGGAACTTCTGGTACAGGGCAGCG--CGATA-- 170
consensus_7030#4 TAGGTCCTTTCGTACTA---CAAT-ATAATAATTTATTAAAGATAGAAAC---CAACC-- 135
consensus_7030#1 TCGGTCTCGTCACACAGT--CCGGCAAGGTGGTGTGGGGAAAGTACGCCCAGGTGACG-- 400
consensus_7030#2 GGTATCATCACGAACTGGGACGATATGGAGAAGATCTGGCACCACACGTTCTACAATGAG 306
consensus_7030#0 GTGTTACCATCGTACTGCGGGTGC-TCGACAGTTCGCAGTACTCCGACAAGAGTACCTCC 539
** *
consensus_7030#3 CTTCGGATG----GCTGAGGCCG-TA-CACGATCGGGTTGTAGACGGCGTTG-GCCTTGG 223
consensus_7030#4 -------TG----GCTTACGCCGGTT-TGCGGACG---CGTGGGCGG------------- 167
consensus_7030#1 AACAATCCG----GAGAACGACGGTTGCATCAACGCGGTACTGCTGGTGTAAAGCAGCGG 456
consensus_7030#2 CTGCGCGTG----GCTCCGGAGGAGCACCCGGTCCTACTGACGGAGGCCCCG--CTCAAC 360
consensus_7030#0 AGTAGCGTGTTCCGATGAGCCCAGGCGCACGGCGAGGCTGCTGGGATCCAAACCCTGGGT 599
* * *
consensus_7030#3 CGAACAGCGAGCCCCAAATGGTAAAAAAAAAACTGAT-CGGGGCCGCCTTGA-------- 274
consensus_7030#4 ------------------------------------------------------------
consensus_7030#1 CGGAGGAAGCGGGAGGGGAAAGGGATGATATATTAAG-GGGGGGAGANGGAATTGGTCTG 515
consensus_7030#2 CCGAAGGCGAACCGTGAGAAGATGACGCAGATCATGT-TCGAAAC-CTTCAACTCGCCGG 418
consensus_7030#0 GCAGTGGGCAGCAGTAAGGACCCACTTGTTGTCCAGCACGGAGCCGCCGCAACGGTGGCT 659
consensus_7030#3 ------------------------------------------------------------
consensus_7030#4 ------------------------------------------------------------
consensus_7030#1 AATTGGGTTGTCGCATCCGGTTAAAGACGGACTGCGTAATTCTTCAGCAGTGATAGTGCG 575
consensus_7030#2 CTATGTATGTGGCCATCCAGGCTGTGCTGTCGTTGTACGCTTCTGGCCGTACCACCGGTA 478
consensus_7030#0 GTTGAAGTATTGCAGGGACACCTGAAACGGAGCATCCGACACGTCGATCTGGAATCCACC 719
consensus_7030#3 ------------------------------------------------------------
consensus_7030#4 ------------------------------------------------------------
consensus_7030#1 CTAGGTATTAAG-CTTTTCTTATCTAAGAGCAGGGGATAAGTTCGAATCAAACAAATCTC 634
consensus_7030#2 TTGTGCTGGACT-CTGGTGATGGTGTGTCGCACACGGTGCCCATCTACGAAGGTTACGCT 537
consensus_7030#0 GACGACGCGATGACCGTTGCTGCCGCGATGAAGCCGAGGCAGGAATCTGGGCAGCAGCGG 779
consensus_7030#3 ------------------------------------------------------------
consensus_7030#4 ------------------------------------------------------------
consensus_7030#1 TGGCGTAAAGGAGAAGGCACAGGATCAGGATTTTTGTACNAACGAAACAACAAGCCCTTG 694
consensus_7030#2 CTTCCTCACGCCATCCTGCGTCTGGATCTGGCCGGTCGCGATCTGACCGACTACCTGATG 597
consensus_7030#0 ATGGACCAAGTTATGCCGCCCGGATGGTTGTTCTTGCGCACAAGCGACCACCGCAACCAG 839
consensus_7030#3 ------------------------------------------------------------
consensus_7030#4 ------------------------------------------------------------
consensus_7030#1 AATAANAAAGGACCCGGTTGAAATATGGCGCGCTACATTGTTTAGCGA------------ 742
consensus_7030#2 AAGATCCTGACCGAGCGAGGCTACTCGTTCACTACCACCGCTGAGCGGGAAATCGTGCGT 657
consensus_7030#0 AACAGCCAGCAGGAGGATTGCAATCTTGTTCGACATCTTGTCAGGCACTCGTATCCAGTA 899
consensus_7030#3 ---------------------------------------------------------
consensus_7030#4 ---------------------------------------------------------
consensus_7030#1 ---------------------------------------------------------
consensus_7030#2 GACATCAAGGAGAAGCTGTGCTACGTTGCGCTGGACTTTGAGCAGGAGATGGCAACT 714
consensus_7030#0 GGCCAACAGTTCTCGAGGAATTCCGCCGC---------------------------- 928
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||