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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7031#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 919 fasta sequence
[CCGGTGGGGGGTTGGTTTTTTTGTTGTTGTTTTTGTATTTTCTTTCTTTTTTCATCCCGTTTGACCCCTCTCGTTATGAGCCCCACCCACCCCCTACACCGACCCGACCCGAATGACACAAAGGGCAAGATCAAACGTGCGTAACAGCAGCAGCTTTGCGTGTGTGTGTGTTTGTGCGTAAAGAGAGGAGAGCAGCACGACGTTCGTCTGTGTCCCGCGCAAGCGCGTCTCTTCCTTCCGTTTGTTCGTTCGTTCTGTTAGTTTTGGATTTAATTTAATTAATTTAATACCGCAATTTATTGTAGCAGTTAGTATTGACCTTAACGTTCGCCCAATATATCGAAACGCGATACCTTAAAGAAGATGAGCGCCACAGAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCGCGCGCGTGCAGATGCCTTTTTAATTTATTGCACGCAGTAATCGCAGTAGGCAGGCAGATAGGTGCAGATGCGCGTGCGTTTGGCATCGTGTTTGCGTAATGCGCGCGAGCATCTCTTCGCCGACCTGAGTGGCAAACCTTCGAATGCATTAGTTTTTTATTTTAGTGAGACGGTTTAATCTTTTTTCATCTTCTCCCTTTTTCCGAGGGTTTTTTTTCTTTCTTTCTTTCTTTATTGTGCCCACTCTCCCGCTCCCCCGCACGATCGCTCAAACATAAACAAAGCACGAGAGCGTGTGGATCGTTAGGATCGTTAATTATAATTATTTCAGTTAAAGCGATACCCCGAGCGGCGCTCGATTGTGTGTTGCCTTACAAATCCGTTTTTGCCCCGTTTTGCGCGTATTTTAGAGAAAGAGAGAGAGAGAGGAAGAGGGAGAGAAAGAGAACAAAAGGGGAGAGTTGTAAAAGCCACAATAAAGAATTA]
[+] EMBL BM647800 [CCGGTGGGGGGTTGGTTTTTTTGTTGTTGTTTTTGTATTTTCTTTCTTTTTTCATCCCGTTTGACCCCTCTCGTTATGAGCCCCACCCACCCCCTACACCGACCCGACCCGAATGACACAAAGGGCAAGATCAAACGTGCGTAACAGCAGCAGCTTTGCGTGTGTGTGTGTTTGTGCGTAAAGAGAGGAGAGCAGCACGACGTTCGTCTGTGTCCCGCGCAAGCGCGTCTCTTCCTTCCGTTTGTTCGTTCGTTCTGTTAGTTTTGGATTTAATTTAATTAATTTAATACCGCAATTTATTGTAGCAGTTAGTATTGACCTTAACGTTCGCCCAATATATCGAAACGCGATACCTTAAAGAAGATGAGCGCCACAGAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCGCGCGCGTGCAGATGCCTTTTTAATTTATTGCACGCAGTAATCGCAGTAGGCAGGCAGATAGGTGCAGATGCGCGTGCGTTTGGCATCGTGTTTGCGTAATGCGCGTGGGCATCTCTTCACCGACCTGAGTGGCAAACCTTCGAATGCATTAGTTTTTTATTTTAGTGAGACGGTTTAATCTTTCTT ]
[+] EMBL BX610572 [ TGCGCGTGCGTTTGGCATCGTGTTTGCGTAATGCGCGCGAGCATCTCTTCGCCGACCTGAGTGGCAAACCTTCGAATGCATTAGTTTTTTATTTTAGTGAGACGGTTTAATCTTTTTTCATCTTCTCCCTTTTTCCGAGGGTTTTTTTTCTTTCTTTCTTTCTTTATTGTGCCCACTCTCCCGCTCCCCCGCACGATCGCTCAAACATAAACAAAGCACGAGAGCGTGTGGATCGTTAGGATCGTTAATTATAATTATTTCAGTTAAAGCGATACCCCGAGCGGCGCTCGATTGTGTGTTGCCTTACAAATCCGTTTTTGCCCCGTTTTGCGCGTATTTTAGAGAAAGAGAGAGAGAGAGGAAGAGGGAGAGAAAGAGAACAAAAGGGGAGAGTTGTAAAAGCCACCATAAAGAATTA]
[+] EMBL BX618034 [ GCGTTTGGCATCGTGTTTGCGTAATGCGCGCGAGCATCTCTTCGCCGACCTGAGTGGCAAACCTTCGAATGCATTAGTTTTTTATTTTAGTGAGACGGTTTAATCTTTTTTCATCTTCTCCCTTTTTCCGAGGGTTTTTTTTCTTTCTTTCTTTCTTTATTGTGCCCACTCTCCCGCTCCCCCGCACGATCGCTCAAACATAAACAAAGCACGAGAGCGTGTGGATCGTTAGGATCGTTAATTATAATTATTTCAGTTAAAGCGATACCCCGAGCGGCGCTCGATTGTGTGTTGCCTTACAAATCCGTTTTTGCCCCGTTTTGCGCGTATTTTAGAGAAAGAGAGAGAGAGAGGAAGAGGGAGAGAAAGAGAACAAAAGGGGAGAGTTGTAAAAGCCACAATAAAGAATTA]
[+] EMBL BX610573 [ TTTGGCATCGTGTTTGCGTAATGCGCGCGAGCATCTCTTCGCCGACCTGAGTGGCAAACCTTCGAATGCATTAGTTTTTTATTTTAGTGAGACGGTTTAATCTTTTTTCATCTTCTCCCTTTTTCCGAGGGTTTTTTTTCTTTCTTTCTTTCTTTATTGTGCCCACTCTCCCGCTCCCCCGCACGATCGCTCAAACATAAACAAAGCACGAGAGCGTGTGGATCGTTAGGATCGTTAATTATAATTATTTCAGTTAAAGCGATACCCCGAGCGGCGCTCGATTGTGTGTTGCCTTACAAATCCGTTTTTGCCCCGTTTTGCGCGTATTTTAGAGAAAGAGAGAGAGAGAGGAAGAGGGAGAGAAAGAGAACAAAAGGGGAGAGTTGTAAAAGCCACAATAAAGAATTA]
consensusID : consensus_7031#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 709 fasta sequence
[TTTAATATACAACAGCAACAAAAAAAATGATTCCAAAAGAAGAGACATAAAAGAAACAAACAAAAGAAAGTGGAATTAGACAATGAAAAACGGAATGGAAGAAAAGCACAGACCCAAACACACACACACACACACAACTACAATTGCAAAAGAAAGGAAAGAAGCAAAACACTTTAAAAAAAGAAGAAAACGAGCAGGATTAGCTTTATATACGGCGGAGGGGTGGGGGGTTGGTTTTTTGTTGTTGTTTTTGTATTTTCTTTTTTTTTCATCCCGTTTGACCCCTCTCGTTATGAGCCCCACCCACCCCCTACACCGACCCGACCCGAATGACACAAAGGGCAAGATCAAACGTGCGTAACAGCAGCAGCTTTGCGTGTGTGTGTGTTTGTGCGTAAAGAGAGGAGAGCAGCACGACGTTCGTCTGTGTCCCGCGCAAGCGCGTCTCTTCCTTCCGTTTGTTCGTTCGTTGTGTTAGTTTTGGATTTAATTTAATTAATTTAATACCGCAATTTATTGTAGCAGTTAGTATTGACCTTAACGTTCGCCCAATATATCGAAACGCGATACCTTAAAGAAGATGAGCGCCCCCGAACAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGCGCGCAGATGCCTTTTTAATTTATTGCACGCAGTAATCGCAGTAGGCAGGCAGATAGGCGCAGATGCGCGTGCGT]
[+] EMBL BX610353 [TTTAATATACAACAGCAACAAAAAAAATGATTCCAAAAGAAGAGACATAAAAGAAACAAACAAAAGAAAGTGGAATTAGACAATGAAAAACGGAATGGAAGAAAAGCACAGACCCAAACACACACACACACACACAACTACAATTGCAAAAGAAAGGAAAGAAGCAAAACACTTTAAAAAAAGAAGAAAACGAGCAGGATTAGCTTTATATACGGCGGAGGGGTGGGGGGTTGGTTTTTTGTTGTTGTTTTTGTATTTTCTTTTTTTTTCATCCCGTTTGACCCCTCTCGTTATGAGCCCCACCCACCCCCTACACCGACCCGACCCGAATGACACAAAGGGCAAGATCAAACGTGCGTAACAGCAGCAGCTTTGCGTGTGTGTGTGTTTGTGCGTAAAGAGAGGAGAGCAGCACGACGTTCGTCTGTGTCCCGCGCAAGCGCGTCTCTTCCTTCCGTTTGTTCGTTCGTTGTGTTAGTTTTGGATTTAATTTAATTAATTTAATACCGCAATTTATTGTAGCAGTTAGTATTGACCTTAACGTTCGCCCAATATATCGAAACGCGATACCTTAAAGAAGATGAGCGCCCCCGAACAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGGG ]
[+] EMBL BX616463 [ CACCGACCCGACCCGAATGACACAAAGGGCAAGATCAAACGTGCGTAACAGCAGCAGCTTTGCGTGTGTGTGTGTTTGTGCGTAAAGAGAGGAGAGCAGCACGACGTTCGTCTGTGTCCCGCGCAAGCGCGTCTCTTCCTTCCGTTTGTTCGTTCGTTGTGTTAGTTTTGGATTTAATTTAATTAATTTAATACCGCAATTTATTGTAGCAGTTAGTATTGACCTTAACGTTCGCCCAATATATCGAAACGCGATACCTTAAAGAAGATGAGCGCCACAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGCGCGCAGATGCCTTTTTAATTTATTGCACGCAGTAATCGCAGTAGGCAGGCAGATAGGCGCAGATGCGCGTGCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7031#0 ------------------------------------------------------------
consensus_7031#1 TTTAATATACAACAGCAACAAAAAAAATGATTCCAAAAGAAGAGACATAAAAGAAACAAA 60
consensus_7031#0 ------------------------------------------------------------
consensus_7031#1 CAAAAGAAAGTGGAATTAGACAATGAAAAACGGAATGGAAGAAAAGCACAGACCCAAACA 120
consensus_7031#0 ------------------------------------------------------------
consensus_7031#1 CACACACACACACACAACTACAATTGCAAAAGAAAGGAAAGAAGCAAAACACTTTAAAAA 180
consensus_7031#0 ---------------------------------------CCGGTGGGGGGTTGGTTTTTT 21
consensus_7031#1 AAGAAGAAAACGAGCAGGATTAGCTTTATATACGGCGGAGGGGTGGGGGGTTGGTTTTTT 240
*******************
consensus_7031#0 TGTTGTTGTTTTTGTATTTTCTTTCTTTTTTCATCCCGTTTGACCCCTCTCGTTATGAGC 81
consensus_7031#1 -GTTGTTGTTTTTGTATTTTCTTT-TTTTTTCATCCCGTTTGACCCCTCTCGTTATGAGC 298
*********************** ***********************************
consensus_7031#0 CCCACCCACCCCCTACACCGACCCGACCCGAATGACACAAAGGGCAAGATCAAACGTGCG 141
consensus_7031#1 CCCACCCACCCCCTACACCGACCCGACCCGAATGACACAAAGGGCAAGATCAAACGTGCG 358
************************************************************
consensus_7031#0 TAACAGCAGCAGCTTTGCGTGTGTGTGTGTTTGTGCGTAAAGAGAGGAGAGCAGCACGAC 201
consensus_7031#1 TAACAGCAGCAGCTTTGCGTGTGTGTGTGTTTGTGCGTAAAGAGAGGAGAGCAGCACGAC 418
************************************************************
consensus_7031#0 GTTCGTCTGTGTCCCGCGCAAGCGCGTCTCTTCCTTCCGTTTGTTCGTTCGTTCTGTTAG 261
consensus_7031#1 GTTCGTCTGTGTCCCGCGCAAGCGCGTCTCTTCCTTCCGTTTGTTCGTTCGTTGTGTTAG 478
***************************************************** ******
consensus_7031#0 TTTTGGATTTAATTTAATTAATTTAATACCGCAATTTATTGTAGCAGTTAGTATTGACCT 321
consensus_7031#1 TTTTGGATTTAATTTAATTAATTTAATACCGCAATTTATTGTAGCAGTTAGTATTGACCT 538
************************************************************
consensus_7031#0 TAACGTTCGCCCAATATATCGAAACGCGATACCTTAAAGAAGATGAGCGCCACAGAATAG 381
consensus_7031#1 TAACGTTCGCCCAATATATCGAAACGCGATACCTTAAAGAAGATGAGCGCCCCCGAACAA 598
*************************************************** * *** *
consensus_7031#0 AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGCGCGCGCGTG 441
consensus_7031#1 AGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAG--------------------CGCG 638
**************************** ******* ** *
consensus_7031#0 CAGATGCCTTTTTAATTTATTGCACGCAGTAATCGCAGTAGGCAGGCAGATAGGTGCAGA 501
consensus_7031#1 CAGATGCCTTTTTAATTTATTGCACGCAGTAATCGCAGTAGGCAGGCAGATAGGCGCAGA 698
****************************************************** *****
consensus_7031#0 TGCGCGTGCGTTTGGCATCGTGTTTGCGTAATGCGCGCGAGCATCTCTTCGCCGACCTGA 561
consensus_7031#1 TGCGCGTGCGT------------------------------------------------- 709
***********
consensus_7031#0 GTGGCAAACCTTCGAATGCATTAGTTTTTTATTTTAGTGAGACGGTTTAATCTTTTTTCA 621
consensus_7031#1 ------------------------------------------------------------
consensus_7031#0 TCTTCTCCCTTTTTCCGAGGGTTTTTTTTCTTTCTTTCTTTCTTTATTGTGCCCACTCTC 681
consensus_7031#1 ------------------------------------------------------------
consensus_7031#0 CCGCTCCCCCGCACGATCGCTCAAACATAAACAAAGCACGAGAGCGTGTGGATCGTTAGG 741
consensus_7031#1 ------------------------------------------------------------
consensus_7031#0 ATCGTTAATTATAATTATTTCAGTTAAAGCGATACCCCGAGCGGCGCTCGATTGTGTGTT 801
consensus_7031#1 ------------------------------------------------------------
consensus_7031#0 GCCTTACAAATCCGTTTTTGCCCCGTTTTGCGCGTATTTTAGAGAAAGAGAGAGAGAGAG 861
consensus_7031#1 ------------------------------------------------------------
consensus_7031#0 GAAGAGGGAGAGAAAGAGAACAAAAGGGGAGAGTTGTAAAAGCCACAATAAAGAATTA 919
consensus_7031#1 ----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||