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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7035#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1278 fasta sequence
[CCGGCTCGCGATGCTGGGCCGCGTCGGCATTACCGCGGTGTACGCGATCGTGACGCTGCACACGGCGGAGCTGTTCCCGACCGAGATACGCAACACGGCGCTCGGCATCTGTTCGACGATGGCGCACGTCGGCTCGATTGCGGCACCGTACATTACGGATCTGCTCGGCCGGCTCGCCTGGTGGATACCGACCACGATCTGCGGCTGCTCGGTGCTGCTGCCCGGTGCGCTCACCCTGCTGCATCCGGAAACGCGCGACGCCGCACTGAAGGATCACGCCCAGCAGGAACGGCACGCAACACACGCGGCCGACGAGGAGATGGACGAGAAGGGCGAAAAACCAATCGCGAACAATTGAGTTATTGCGAGGGGGAGAGTAAGAAATTAACACGACGGCACACACACACTGAGGGGGCTTTGTTTAAGCGAGATTAGAAAGGATAAGGACTTTACTTTAAGCCGAAC--------CGGTCGGACCGATCGGAAAATGGCGCAGATAGTAGGCAACGTCGGTGTAGACGCCGGGCGTTCCCGGTGCCCCACAGCCGACCCCGTACGAGATGACGCCGCGCACACAAACTGCGTGGACGGTGGGCGCTGGCACACGTAGCCTCCGCCGGAATCACCCTTGCAAGCATCGGACCGCCCGATGGCACAAAACATTCCAGAGTCGGTTGGTGGCGCTACGACCGCTCCCATCATTCCAATGCATCGGTCCAGCTCGAGGGCCAGCACCGTGCCGTAGTGGAGCGTTCGGCTGATCGGCCCATCGTACGAGCCGGACCCATAGCCGAAGATGTAACACAGCTCACCGTTAGCGGCCGTACGGTAGGTGTCGTTCGGTAGGCGTAACGTCGACTGTTTATCGCCTTCCGGTTTGCTGCTCGGTGTGGTTGGTAACGCTGCCCGAAGCAATGCGATATCGCCTACCATCGTTACGGGATTGTAACTATCCAGCAGGTGCGTCTCAACGATGGGTAAACGTTCGACGGTGCTATCGTCCAGACTGGCGCCACCAATTACCGCCACCATTTGCGTAAGATTGCCCTTTCGCAGCGGTATGATGCAGTCCGCCGCGGTTAGTATCCATCCATCGCCCAGATGCGTACCGCCACAAAAGTTTGTCCAGTTTGCATCGGCCAGCTGTAACGAAACGGCAAACGGAAACATGTCCCGCTTGCGGACACGTTCACCGCGCACGATCGCACCGGTGGGTGGCAGAAATAGTGGCGTTAAACTTAGCACTAGCACCGAAAGCACCACGTACGGTGCCATCTCTGT]
[+] EMBL BM647553 [CCGGCTCGCGATGCTGGGCCGCGTCGGCATTACCGCGGTGTACGCGATCGTGACGCTGCACACGGCGGAGCTGTTCCCGACCGAGATACGCAACACGGCGCTCGGCATCTGTTCGACGATGGCGCACGTCGGCTCGATTGCGGCACCGTACATTACGGATCTGCTCGGCCGGCTCGCCTGGTGGATACCGACCACGATCTGCGGCTGCTCGGTGCTGCTGCCCGGTGCGCTCACCCTGCTGCATCCGGAAACGCGCGACGCCGCACTGAAGGATCACGCCCAGCAGGAACGGCACGCAACACACGCGGCCGACGAGGAGATGGACGAGAAGGGCGAAAAACCAATCGCGAACAATTGAGTTATTGCGAGGGGGAGAGTAAGAAATTAACACGACGGCACACACACACTGAGGGGGCTTTGTTTAAGCGAGATTAGAAAGGATAAGGACTTTACTTTAAGCCGAAC CGGTCGGACCGATCGGAAAATGGCGCAGATAGTAGGCAACGTCGGTGTAGACGCCGGGCGTTCCCGGTGCCC ]
[+] EMBL CNS0952X [ AGCGAGATTAGAAAGGATAAGGACTTTACTTTAAGCCGAACCGGTCACACGGTCGGACCGATCGGAAAATGGCGCAGATAGTAGGCAACGTCGGTGTAGACGCCGGGCGTTCCCGGTGCCCCACAGCCGACCCCGTACGAGATGACGCCGCGCACACAAACTGCGTGGACGGTGGGCGCTGGCACACGTAGCCTCCGCCGGAATCACCCTTGCAAGCATCGGACCGCCCGATGGCACAAAACATTCCAGAGTCGGTTGGTGGCGCTACGACCGCTCCCATCATTCCAATGCATCGGTCCAGCTCGAGGGCCAGCACCGTGCCGTAGTGGAGCGTTCGGCTGATCGGCCCATCGTACGAGCCGGACCCATAGCCGAAGATGTAACACAGCTCACCGTTAGCGGCCGTACGGTAGGTGTCGTTCGGTAGGCGTAACGTCGACTGTTTATCGCCTTCCGGTTTGCTGCTCGGTGTGGTTGGTAACGCTGCCCGAAGCAATGCGATATCGCCTACCATCGTTACGGGATTGTAACTATCCAGCAGGTGCGTCTCAACGATGGGTAAACGTTCGACGGTGCTATCGTCCAGACTGGCGCCACCAATTACCGCCACCATTTGCGTAAGATTGCCCTTTCGCAGCGGTATGATGCAGTCCGCCGCGGTTAGTATCCATCCATCGCCCAGATGCGTACCGCCACAAAAGTTTGTCCAGTTTGCATCGGCCAGCTGTAACGAAACGGCAAACGGAAACATGT ]
[-] EMBL CNS0952W [ GGTGGGCGCTGGCACACGTAGCCTCCGCCGGAATCACCCTTGCAAGCATCGGACCGCCCGATGGCACAAAACATTCCAGAGTCGGTTGGTGGCGCTACGACCGCTCCCATCATTCCAATGCATCGGTCCAGCTCGAGGGCCAGCACCGTGCCGTAGTGGAGCGTTCGGCTGATCGGCCCATCGTACGAGCCGGACCCATAGCCGAAGATGTAACACAGCTCACCGTTAGCGGCCGTACGGTAGGTGTCGTTCGGTAGGCGTAACGTCGACTGTGTATCGCCTTCCGGTTTGCTGCTCGGTGTGGTTGGTAACGCTGCCCGAAGCAATGCGATATCGCCTACCATCGTTACGGGATTGTAACTATCCAGCAGGTGCGTCTCAACGATGGGTAAACGTTCGACGGTGCTATCGTCCAGACTGGCGCCACCAATTACCGCCACCATTTGCGTTAGATTGCCCTTTCGCAGCGGTATGATGCAGTGCGCCGCGGTTAGTATCCATCCATCGCCCAGATGCGTACCGCCACAGAAGTGTGTCCAGTTTGCATCGGCCAGCTGTAACGAAACGGCAAACGGAAACATGTCCCGCTTGCGGACACGTTCACCGCGCACGATCGCACCGGTGGGTGGCAGAAATAGTGGCGTTAAACTTAGCACTAGCACCGAAAGCACCACGTACGGTGCCATCTCTGT]
consensusID : consensus_7035#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 750 fasta sequence
[ACATTCCAGAGTCGGTTGGTGGCGCTACGACCGCTCCCATCATTCCAATGCATCGGTCCAGCTCGAGGGCCAGCACCGTACCGTAGTGGAGCGTTCGGCTGATTGGCCCATCGTACGAGCCGGACCCATAGCCGAAGATGTAACACAGCTCACCGTTAGCGGCCGTACGGTAGGTGTCGTTCGGTAGGCGTAACGTCGACTGTGTATCGCCTTCCGGTTTGCTTCTCGGTGTGGTTGGTAACGCTGCCCGAAGCAATGCGATATCGCCTACCATCGTTACGCTGCCAGCGGATGAACGAACAGTGAAACAGAAAAAAAGCCTCTCTTTAATTGATTCGGTTCGTTACTCTCATACAGCAGTGTGGTGTGTTCACTTACGGATTGTAACTATCCAGCAGGTGCGTCTCAACGATGGGTAAACGTTCGACAGTGCTATCGTCCAGACTGGCGCCACCAATTACCGCCACCATTTGCGTTAGATTGCCCTTTCGCCTGTAGAAAGTGAAACGATAAAGCGATTTAACAGCATATGGACAGAGAGGTTTCGGTAGATGATTTTATAAATGATAAAACAAAACAATTTTCTTTAAAATCCCAATTATCAGGGAAACTGAGCAGGGCGGGCAAACAATTAGCCAGGGAATTTTACACATTAAGCTAACACATTTAGGCTTTAATTGTACGCTTTAGAATATAAGACGCTACCACTTTGCAGACACGTTGTAGGACGGAACAGAACAATAACACTCA]
[+] EMBL BX618727 [ACATTCCAGAGTCGGTTGGTGGCGCTACGACCGCTCCCATCATTCCAATGCATCGGTCCAGCTCGAGGGCCAGCACCGTACCGTAGTGGAGCGTTCGGCTGATTGGCCCATCGTACGAGCCGGACCCATAGCCGAAGATGTAACACAGCTCACCGTTAGCGGCCGTACGGTAGGTGTCGTTCGGTAGGCGTAACGTCGACTGTGTATCGCCTTCCGGTTTGCTTCTCGGTGTGGTTGGTAACGCTGCCCGAAGCAATGCGATATCGCCTACCATTGTTACGCTGCCAGCGGATGAACGAACAGTGAAACAGAAAAAAAGCCTCTCTTTAATTGATTCGGTTCGTTACTCTCATACAGCAGTGTGGTGTGTTCACTTACGGATTGTAACTATCCAGCAGGTGCGTCTCAACGATGGGTAAACGTTCGACAGTGCTATCGTCCAGACTGGCGCCACCAATTACCGCCACCATTTGCGTTAGATTGCCCTTTCGCCTGTAGAAAGTGAAACGATAAAGCGATTTAACAGCATATGGACAGAGAGGTTTCGGTAGATGATTTTATAAATGATAAAACAAAA ]
[+] EMBL BX617859 [ GCCTTCCGGTTTGCTGCTCGGTGTGGTTGGTAACGCTGCCCGAAGCAATGCGATATCGCCTACCATCGTTACGCTGCCAGCGGATGAACGAACAGTGAAACAGAAAAAAAGCCTCTCTTTAATTGATTCGGTTCGTTACTCTCATACAGCAGTGTGGTGTGTTCACTTACGGATTGTAACTATCCAGCAGGTGCGTCTCAACGATGGGTAAACGTTCGACAGTGCTATCGTCCAGACTGGCGCCACCAATTACCGCCACCATTTGCGTTAGATTGCCCTTTCGCCTGTAGAAAGTGAAACGATAAAGCGATTTAACAGCATATGGACAGAGAGGTTTCGGTAGATGATTTTATAAATGATAAAACAAAACAATTTTCTTTAAAATCCCAATTATCAGGGAAACTGAGCAGGGCGGGCAAACAATTAGCCAGGGAATTTTACACATTAAGCTAACACATTTAGGCTTTAATTGTACGCTTTAGAATATAAGACGCTACCACTTTGCAGACACGTTGTAGGACGGAACAGAACAATAACACTCA]
[+] EMBL BX608506 [ GGTTGGTAACGCTGCCCGAAGCAAGGCTATATCGCCTACCATCGTTACGCTGCCAGCAGATGAACGAACAGTGAAACAG ACAAAGCCTCTCTTTAATTGATTCGGTTCGTTACTCTCATACAGCAGTGTGGTGCGTTCACTTACGGATTGTAACTATCCAGCAGGTGCGTCTCAACGATGGGTAAACGTTCGACGGTGCTATCGTCCAGACTGGCGCCACCAATTACCGCCACCATTTGCGTTAGATTGCCCTTTCGCCTGTAGAAAGTGAAACGATAAAGCGATTAAACAGCATACAGACAGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7035#0 CCGGCTCGCGATGCTGGGCCGCGTCGGCATTACCGCGGTGTACGCGATCGTGACGCTGCA 60
consensus_7035#1 ------------------------------------------------------------
consensus_7035#0 CACGGCGGAGCTGTTCCCGACCGAGATACGCAACACGGCGCTCGGCATCTGTTCGACGAT 120
consensus_7035#1 ------------------------------------------------------------
consensus_7035#0 GGCGCACGTCGGCTCGATTGCGGCACCGTACATTACGGATCTGCTCGGCCGGCTCGCCTG 180
consensus_7035#1 ------------------------------------------------------------
consensus_7035#0 GTGGATACCGACCACGATCTGCGGCTGCTCGGTGCTGCTGCCCGGTGCGCTCACCCTGCT 240
consensus_7035#1 ------------------------------------------------------------
consensus_7035#0 GCATCCGGAAACGCGCGACGCCGCACTGAAGGATCACGCCCAGCAGGAACGGCACGCAAC 300
consensus_7035#1 ------------------------------------------------------------
consensus_7035#0 ACACGCGGCCGACGAGGAGATGGACGAGAAGGGCGAAAAACCAATCGCGAACAATTGAGT 360
consensus_7035#1 ------------------------------------------------------------
consensus_7035#0 TATTGCGAGGGGGAGAGTAAGAAATTAACACGACGGCACACACACACTGAGGGGGCTTTG 420
consensus_7035#1 ------------------------------------------------------------
consensus_7035#0 TTTAAGCGAGATTAGAAAGGATAAGGACTTTACTTTAAGCCGAACCGGTCGGACCGATCG 480
consensus_7035#1 ------------------------------------------------------------
consensus_7035#0 GAAAATGGCGCAGATAGTAGGCAACGTCGGTGTAGACGCCGGGCGTTCCCGGTGCCCCAC 540
consensus_7035#1 ------------------------------------------------------------
consensus_7035#0 AGCCGACCCCGTACGAGATGACGCCGCGCACACAAACTGCGTGGACGGTGGGCGCTGGCA 600
consensus_7035#1 ------------------------------------------------------------
consensus_7035#0 CACGTAGCCTCCGCCGGAATCACCCTTGCAAGCATCGGACCGCCCGATGGCACAAAACAT 660
consensus_7035#1 --------------------------------------------------------ACAT 4
****
consensus_7035#0 TCCAGAGTCGGTTGGTGGCGCTACGACCGCTCCCATCATTCCAATGCATCGGTCCAGCTC 720
consensus_7035#1 TCCAGAGTCGGTTGGTGGCGCTACGACCGCTCCCATCATTCCAATGCATCGGTCCAGCTC 64
************************************************************
consensus_7035#0 GAGGGCCAGCACCGTGCCGTAGTGGAGCGTTCGGCTGATCGGCCCATCGTACGAGCCGGA 780
consensus_7035#1 GAGGGCCAGCACCGTACCGTAGTGGAGCGTTCGGCTGATTGGCCCATCGTACGAGCCGGA 124
*************** *********************** ********************
consensus_7035#0 CCCATAGCCGAAGATGTAACACAGCTCACCGTTAGCGGCCGTACGGTAGGTGTCGTTCGG 840
consensus_7035#1 CCCATAGCCGAAGATGTAACACAGCTCACCGTTAGCGGCCGTACGGTAGGTGTCGTTCGG 184
************************************************************
consensus_7035#0 TAGGCGTAACGTCGACTGTTTATCGCCTTCCGGTTTGCTGCTCGGTGTGGTTGGTAACGC 900
consensus_7035#1 TAGGCGTAACGTCGACTGTGTATCGCCTTCCGGTTTGCTTCTCGGTGTGGTTGGTAACGC 244
******************* ******************* ********************
consensus_7035#0 TGCCCGAAGCAATGCGATATCGCCTACCATCGTTACG----------------------- 937
consensus_7035#1 TGCCCGAAGCAATGCGATATCGCCTACCATCGTTACGCTGCCAGCGGATGAACGAACAGT 304
*************************************
consensus_7035#0 ------------------------------------------------------------
consensus_7035#1 GAAACAGAAAAAAAGCCTCTCTTTAATTGATTCGGTTCGTTACTCTCATACAGCAGTGTG 364
consensus_7035#0 --------------GGATTGTAACTATCCAGCAGGTGCGTCTCAACGATGGGTAAACGTT 983
consensus_7035#1 GTGTGTTCACTTACGGATTGTAACTATCCAGCAGGTGCGTCTCAACGATGGGTAAACGTT 424
**********************************************
consensus_7035#0 CGACGGTGCTATCGTCCAGACTGGCGCCACCAATTACCGCCACCATTTGCGTAAGATTGC 1043
consensus_7035#1 CGACAGTGCTATCGTCCAGACTGGCGCCACCAATTACCGCCACCATTTGCGTTAGATTGC 484
**** *********************************************** *******
consensus_7035#0 CCTTTCGCAGCGGTATGATGCAGTCCGCCGCGGTTAGTATCCATCCATCGCCCAGATGCG 1103
consensus_7035#1 CCTTTCGC--CTGTAGAAAGTGAAACGATAAAGCGATTTAACAGCATATGGACAGAGAGG 542
******** * *** * * ** * * * ** * * **** *
consensus_7035#0 TACCGCCACAAAAGTTTGTCCA-GTTTGCATCGGCCAGCTGTAACGAAACGGCAAAC--- 1159
consensus_7035#1 TTTCGGTAGATGATTTTATAAATGATAAAACAAAACAATTTTCTTTAAAATCCCAATTAT 602
* ** * * * *** * * * * * ** * * *** * **
consensus_7035#0 --GGAAACATGTCCCGCTTGCGGACACGTTCA-CCGCGCACGATCGCACCGGTGGGTGGC 1216
consensus_7035#1 CAGGGAAACTGAGCAGGGCGGGCAAACAATTAGCCAGGGAATTTTACACATTAAGCTAAC 662
** ** ** * * * * * ** * * ** * * * *** * * *
consensus_7035#0 AGAAATAGTGGCGTTAAACTTA-GCACTAGCACCGAAAGCACCACGTACGGTGCCATCTC 1275
consensus_7035#1 ACATTTA--GGCTTTAATTGTACGCTTTAGAATATAAGACGCTAC-CACTTTGCAGACAC 719
* * ** *** **** ** ** *** * ** * * ** ** *** * *
consensus_7035#0 TGT---------------------------- 1278
consensus_7035#1 GTTGTAGGACGGAACAGAACAATAACACTCA 750
*
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||