These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7037#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 759 fasta sequence [CCGCCCACGCGTCCGGAGAGAAGAAACGGGAAAAAACAGCAAAACACAACTGTACTATCAACATAATCGATAGGAGAGAGTAGCAAAAGCAAGTATAAACCAGCCAAGTGCCATCAATTTAAATTTGCCCAAATCATGTCACACTACCTTACGTGTGCGCGGAATATATGTTTTCAGAACACTGTGGTCCAAATGTTGGGTGCAAGTTCCAGCGTAACTAAAGCTGAGCTTAGCAAAACGTATATCAGAGGGGGAAAACATGTAGTACGATCGGATGGGCACGAGAAGTGCAAGCTAATGGAAGGAAACCAATACACTTAAAATCACTGCAATGTAACTGAATTACATTCTATTGCCTTTTAAAACGAAACGATACTAGAAGAGACTTGAGTGTGATGCAATTTAGAAACAAACACAAGAAAACCAACTAACCTATCTACAAACTATGAGTAATCACTACCAATCAATCCTATCGCTCTGTGTGAGGGAAGAGTAAACATATATCCTAAAAAGAAATGGGAAACACCGTGTACACAATGCGTCGGATGTGTTGCGTCCGGTTGAAATGCATTTTGGATCTACTTTAATTTTGTTACGGTATGATTTGCAATACGTTTTCGAACGACGGTTGTTCTTCCCTGTATCTGTAAGTGTGTATTTTTGTAAAATATTTGACTTTTGATTTCTTTCTTTTTCCAAGTTTTCCCACTTTTGTTTGGCTGTAAAAATAAATTTAAAGCCCAAGGATAACATCGCGTG] [+] EMBL BM593735 [CCGCCCACGCGTCCGGAGAGAAGAAACGGGAAAAAACAGCAAAACACAACTGTACTATCAACATAATCGATAGGAGAGAGTAGCAAAAGCAAGTATAAACCAGCCAAGTGCCATCAATTTAAATTTGCCCAAATCATGTCACACTACCTTACGTGTGCGCGGAATATATGTTTTCAGAACACTGTGGTCCAAATGTTGGGTGCAAGTTCCAGCGTAACTAAAGCTGAGCTTAGCAAAACGTATATCAGAGGGGGAAAACATGTAGTACGATCGGATGGGCACGAGAAGTGCAAGCTAATGGAAGGAAACCAATACACTTAAAATCACTGCAATGTAACTGAATTACATTCTATTGCCTTTTAAAACGAAACGATACTAGAAGAGACTTGAGTGTGATGCAATTTAGAAACAAACACAAGAAAACCAACTAACCTATCTACAAACTATGAGTAATCACTACCAATCAATCCTATCGCTCTGTGTGAGGGAAGAGTAAACATATATCCTAAAAAGAAATGGGAAACACCGTGTACACAATGCGTCGGATGTGTTGCGTCCGGTTGAAATGCATTTTGGATCTACTTTAATTTTGTTACGGTAT ] [+] EMBL BX615347 [ CTGTACTATCAACATAATCGATAGGAGAGAGTAGCAAAAGCAAGTATAAACCAGCCAAGTGCCATCAATTTAAATTTGCCCAAATCATGTCACACTACCTTACGTGTGCGCGGAATATATGTTTTCAGAACACTGTGGTCCAAATGTTGGGTGCAAGTTCCAGCGTAACTAAAGCTGAGCTTAGCAAAACGTATATCAGAGGGGGAAAACATGTAGTACGATCGGATGGGCACGAGAAGTGCAAGCTAATGGAAGGAAACCAATACACTTAAAATCACTGCAATGTAACTGAATTACATTCTATTGCCTTTTAAAACGAAACGATACTAGAAGAGACTTGAGTGTGATGCAATTTAGAAACAAACACAAGAAAACCAACTAACCTATCTACAAACTATGAGTAATCACTACCAATCAATCCTATCGCTCTGTGTGAGGGAAGAGTAAACATATATCCTAAAAAGAAATGGGAAACACCGTGTACACAATGCGTCGGATGTGTTGCGTCCGGTTGAAATGCATTTTGGATCTACTTTAATTTTGTTACGGTATGATTTGCAATACGTTTTCGAACGACGGTTGTTCTTCCCTGTATCTGTAAGTGTGTATTTTTGTAAAATATTTGACTTTTGATTTCTTTCTTTTTCCAAGTTTTCCCACTTTTGTTTGGCTGTAAAAATAAATTTAAAGCCCAAGGATAACATCGCGTG] [+] EMBL BX614787 [ GAGCTTAGCAAAACGTATATCAGAGGGGGAAAACATGTAGTACGATCGGATGGGCACGAGAAGTGCAAGCTAATGGAAGGAAACCAATACACTTAAAATCACTGCAATGTAACTGAATTACATTCTATTGCCTTTTAAAACGAAACGATACTAGAAGAGACTTGAGGGTGATGCAATTTAGAAACAAACACAAGAAAACTAACTAACTTATCTACAAACTATGAGTAATCACTACTAATCAATCTTATCGCTCTGTGTGAGGGAAGAGTAAACATATATCTTAAAAAGAAATGGGAAACACTGTGTACACAATGCGTCGGAAGTGTTGCGTCTGGTTGAAATGCATTTTGGATCTACTTTAATTTTGTTACGGTATGATTTGCAATA ] consensusID : consensus_7037#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence [GCAGATCGGCACGAGGAGTNAAGCAGTATAAACCAGCCAAGTGCCATCATTTAAATTTGCCCAAATCATGTCACACTACCTTACGTGTGCGCGGAATATATGTTTTCAGAACACTGTGGTCCAAATGTTGGGTGCAAGTTCCAGCGTAACTAAAGCTGAGCTTAGCAAAACGTATATCAGAGGGGGAAAACATGTAGTACGATCGGATGGGCACGAGAAGTGCAAGCTAATGGAAGGAAACCAATACACTTAAAATCACTGCAATGTAACTGAATTACATTCTATTGCCTTTTAAAACGAAACGATACTAGAAGAGACTTGAGTGTGATGCAATTTAGAAACAAACACAAGAAAACCAACTAACCTATCTACAAACTATGAGTAATCACTACCAATCAAGTCCTATCGCTCTGTGTGAGGGAAGAGTAAACATATATCCTAAAAAAGAAATGGGAAACACCGTGTACACAATGCGTCGGATGTGTTGCGTCCGGTTGAAATGCATTTTGGATCTACTTTAATNTGTTACGGTATGATTTGCAATACGTTTTCGAACGACGGNTGTTCTTCCCTGTATCTGTAAGTGTGTATNAGGTAAAATATGNGGACTTTCGATTTCGGTGTGTTGTGCTGTCAGGGTGCTGTNN] [+] EMBL BX466352 [GCAGATCGGCACGAGGAGTNAAGCAGTATAAACCAGCCAAGTGCCATCATTTAAATTTGCCCAAATCATGTCACACTACCTTACGTGTGCGCGGAATATATGTTTTCAGAACACTGTGGTCCAAATGTTGGGTGCAAGTTCCAGCGTAACTAAAGCTGAGCTTAGCAAAACGTATATCAGAGGGGGAAAACATGTAGTACGATCGGATGGGCACGAGAAGTGCAAGCTAATGGAAGGAAACCAATACACTTAAAATCACTGCAATGTAACTGAATTACATTCTATTGCCTTTTAAAACGAAACGATACTAGAAGAGACTTGAGTGTGATGCAATTTAGAAACAAACACAAGAAAACCAACTAACCTATCTACAAACTATGAGTAATCACTACCAATCAAGTCCTATCGCTCTGTGTGAGGGAAGAGTAAACATATATCCTAAAAAAGAAATGGGAAACACCGTGTACACAATGCGTCGGATGTGTTGCGTCCGGTTGAAATGCATTTTGGATCTACTTTAATNTGTTACGGTATGATTTGCAATACGTTTTCGAACGACGGNTGTTCTTCCCTGTATCTGTAAGTGTGTATNAGGTAAAATATGNGGACTTTCGATTTCGGTGTGTTGTGCTGTCAGGGTGCTGTNN] consensusID : consensus_7037#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence [ATCGCCGAGGTATACTTACGTGTGCGCGGAATATATGTTTTCAGAACACTGGGTCCAAATGTTGGGTGCAGTTCCAGCGTAACTAAAGCTGAGCTTAGCAAAACGTATATCAGAGGGGGAAAACATGTAGTACGATCGGATGGGCACGAGAAGTGCAAGCTAATGGAAGGAAACCAATACACTTAAAATCACTGCAATGTAACTGAATTACATTCTATGCCTTTTAAAACGAAACGATACTAGAAGAGACTTGAGTGTGATGCAATTTAGAAACAAACACAAGAAAACCAACTAACCTATCTACAAACTATGAGCTAATCACTACCAATCAATCCTATCGCTCTGTGCTGAGGCGAAGCAGCTAACACACTATATCCCTAAACAACGAACACTGGCGCAAACACCGTGTACACACATGCGCTCGCGCACTGTGCTTGCCGCTCCGGCTTGCACACNTGCACTTTCGGGCATCCTACCCTCTCTAACTCTCTCNCGCTCCACCCGCGCTACTGCACCTCC] [+] EMBL AL930551 [ATCGCCGAGGTATACTTACGTGTGCGCGGAATATATGTTTTCAGAACACTGGGTCCAAATGTTGGGTGCAGTTCCAGCGTAACTAAAGCTGAGCTTAGCAAAACGTATATCAGAGGGGGAAAACATGTAGTACGATCGGATGGGCACGAGAAGTGCAAGCTAATGGAAGGAAACCAATACACTTAAAATCACTGCAATGTAACTGAATTACATTCTATGCCTTTTAAAACGAAACGATACTAGAAGAGACTTGAGTGTGATGCAATTTAGAAACAAACACAAGAAAACCAACTAACCTATCTACAAACTATGAGCTAATCACTACCAATCAATCCTATCGCTCTGTGCTGAGGCGAAGCAGCTAACACACTATATCCCTAAACAACGAACACTGGCGCAAACACCGTGTACACACATGCGCTCGCGCACTGTGCTTGCCGCTCCGGCTTGCACACNTGCACTTTCGGGCATCCTACCCTCTCTAACTCTCTCNCGCTCCACCCGCGCTACTGCACCTCC] consensusID : consensus_7037#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence [CTGAAGCGGAAGCAGAATAGTATGCTAACTCCACACCAACACGCTGTATTTAATGGAAGCAATGTGTATCATTCAATCAACTGCAATCGCAGTACTGGACGTATTCGTAATAAGCAATCATTTTTTTTAGGGACGAAGCACTGTCATTTAATTGTAATATCATCAATCAAACGCGAGAGACAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAACGGGAAAAAACAGCAAAACACAACTGTACTATCAACATAATCGATAGGAGAGAGTAGCAAAAGCAAGTATAAACCAGCCAAGTGCCATCCAATTTAAAATTTGCCCAAATCATGTCACACTAACCTTACGTGTGCGCNGGAATATATGTNNTTCAAGANNCACTGTGGTCCANATGTTGGGGTGCCAAGTTCCCAGCGTAACTAAAGCTGAGCTTAGCAAACGTATATCAGAGGGGGGAAAAACNTGTANTACGATCGGA] [+] EMBL BX619146 [CTGAAGCGGAAGCAGAATAGTATGCTAACTCCACACCAACACGCTGTATTTAATGGAAGCAATGTGTATCATTCAATCAACTGCAATCGCAGTACTGGACGTATTCGTAATAAGCAATCATTTTTTTTAGGGACGAAGCACTGTCATTTAATTGTAATATCATCAATCAAACGCGAGAGACAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAACGGGAAAAAACAGCAAAACACAACTGTACTATCAACATAATCGATAGGAGAGAGTAGCAAAAGCAAGTATAAACCAGCCAAGTGCCATCCAATTTAAAATTTGCCCAAATCATGTCACACTAACCTTACGTGTGCGCNGGAATATATGTNNTTCAAGANNCACTGTGGTCCANATGTTGGGGTGCCAAGTTCCCAGCGTAACTAAAGCTGAGCTTAGCAAACGTATATCAGAGGGGGGAAAAACNTGTANTACGATCGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7037#1 ------------------------------------------------------------ consensus_7037#2 ------------------------------------------------------------ consensus_7037#0 CCGCCCACGCGTCCGGAGAGAAGAAACGGGAAAAAACAGCAAAACACAACTGTACTATCA 60 consensus_7037#3 ------------------------------------------------------------ consensus_7037#1 -------GCAGATCGGCACGAGGAGTNAAGCAGTATAAACCAGCCAAGTGCCATCA-TTT 52 consensus_7037#2 ------------------------------------------------------------ consensus_7037#0 ACATAATCGATAGGAGAGAGTAGCAAAAGCAAGTATAAACCAGCCAAGTGCCATCAATTT 120 consensus_7037#3 -------------------------------------------CTGAAGCGGAAGCAGAA 17 consensus_7037#1 AAATTTGCCCAAATCATGTCACACTAC-CTTACGTGTGCGCGGAATATATGTT-TTCAGA 110 consensus_7037#2 ------------ATC--GCCGAGGTATACTTACGTGTGCGCGGAATATATGTT-TTCAGA 45 consensus_7037#0 AAATTTGCCCAAATCATGTCACACTAC-CTTACGTGTGCGCGGAATATATGTT-TTCAGA 178 consensus_7037#3 TAGTATGCTAACTCCACACCAACACGCTGTATTTAATGGAAGCAATGTGTATCATTCAAT 77 * * * ** * *** * * * **** consensus_7037#1 ACACTGTGGTCCAAATGTTGGGTGCAAGTTCCAGCGTAACTAAAGCTGAGCTTAGCAAAA 170 consensus_7037#2 ACACTG-GGTCCAAATGTTGGGTGCA-GTTCCAGCGTAACTAAAGCTGAGCTTAGCAAAA 103 consensus_7037#0 ACACTGTGGTCCAAATGTTGGGTGCAAGTTCCAGCGTAACTAAAGCTGAGCTTAGCAAAA 238 consensus_7037#3 CAACTGCAATCGCAGTACTGGACGTA--TTC----GTAATAAGCAATCATTTTTTTTAGG 131 **** ** * * *** * * *** **** * * * ** * consensus_7037#1 CGTATATCAGAGGGGGAAAACATGTAGTACGATCGGATGGGCACGAGAAGTGCAAGCTAA 230 consensus_7037#2 CGTATATCAGAGGGGGAAAACATGTAGTACGATCGGATGGGCACGAGAAGTGCAAGCTAA 163 consensus_7037#0 CGTATATCAGAGGGGGAAAACATGTAGTACGATCGGATGGGCACGAGAAGTGCAAGCTAA 298 consensus_7037#3 GACGAAGCACTGTCATTTAAT-TGTAATATCATCAATCAAACGCGAGAGA--CAGCGAGA 188 * ** * ** **** ** *** * ***** ** * consensus_7037#1 TGGAAGGAAACCAATACACTTAAAATCACTGCAATGTAACTGAATTACATTCTATTGCCT 290 consensus_7037#2 TGGAAGGAAACCAATACACTTAAAATCACTGCAATGTAACTGAATTACATTCTAT-GCCT 222 consensus_7037#0 TGGAAGGAAACCAATACACTTAAAATCACTGCAATGTAACTGAATTACATTCTATTGCCT 358 consensus_7037#3 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAACGGGAAAAAACAGCA------ 242 ** ** * * * * * * * * * * *** * * * * * consensus_7037#1 TTTAAAACGAAACGATACTAG-AAGAGACTTGAGTGTGATGCAATTTAGAAACAAACACA 349 consensus_7037#2 TTTAAAACGAAACGATACTAG-AAGAGACTTGAGTGTGATGCAATTTAGAAACAAACACA 281 consensus_7037#0 TTTAAAACGAAACGATACTAG-AAGAGACTTGAGTGTGATGCAATTTAGAAACAAACACA 417 consensus_7037#3 ----AAACACAACTGTACTATCAACATAATCGATAGGAGAGAGTAGCAAAAGCAAGTATA 298 **** *** ***** ** * * * ** * * * ** *** * * consensus_7037#1 AGAAAACCAACTAACCTATCTACAAACTATGAG-TAATCACTACCAATCAAGTCCTATCG 408 consensus_7037#2 AGAAAACCAACTAACCTATCTACAAACTATGAGCTAATCACTACCAATCAA-TCCTATCG 340 consensus_7037#0 AGAAAACCAACTAACCTATCTACAAACTATGAG-TAATCACTACCAATCAA-TCCTATCG 475 consensus_7037#3 AACCAGCCAAGTG--CCATC--CAATTTAAAAT-------TTGCC---CAAATCATGTCA 344 * * **** * * *** *** ** * * ** *** ** * ** consensus_7037#1 CTCTGTG-TGAGG-GAAG-AGTAAACA---TATATCC-TAAAAAAGAAATG-----GGAA 456 consensus_7037#2 CTCTGTGCTGAGGCGAAGCAGCTAACACACTATATCCCTAAACAACGAACACTGGCGCAA 400 consensus_7037#0 CTCTGTG-TGAGG-GAAG-AGTAAACA---TATATCC-TAAA-AAGAAATG-----GGAA 522 consensus_7037#3 CACTAACCTTACGTGTGCGCNGGAATA---TATGTNNTTCAAGANNCACTG--------T 393 * ** * * * * ** * *** * * ** * * consensus_7037#1 ACACCGTGTACACA-ATGCGTCGGATGTGTTGCGTCCGGTTGAAATGCATTTTGGATCTA 515 consensus_7037#2 ACACCGTGTACACACATGCGCTCG-CGCACTGTG-CTTGCCGCTCCGGCTTGCACACNTG 458 consensus_7037#0 ACACCGTGTACACA-ATGCGTCGGATGTGTTGCGTCCGGTTGAAATGCATTTTGGATCTA 581 consensus_7037#3 GGTCCANATGTTGGGGTGCCAAGTTCCCAGCGTAACTAAA-GCTGAGCTTAGCAAACGTA 452 ** * *** * * * * * * * consensus_7037#1 CTTTAA-TNTGTTACGGTATGATTTGCAATACGTTTTCGAACGACGGNTGTTCTTCCCTG 574 consensus_7037#2 CACTT--TCGGGCATCCTACCCTCTCTAACTCTCTCNCGCTCCACCCGCGCTA----CTG 512 consensus_7037#0 CTTTAATTTTGTTACGGTATGATTTGCAATACGTTTTCGAACGACGGTTGTTCTTCCCTG 641 consensus_7037#3 TATCAGAGGGGGGA----AAAACNTGTANTACGATCGGA--------------------- 487 * * * * * * * consensus_7037#1 TATCTGTAAGTGTGTATNAGGTAAAATATGNGGACTTTCGATTTCGGTGTGTTGTGCTGT 634 consensus_7037#2 CACCTCC----------------------------------------------------- 519 consensus_7037#0 TATCTGTAAGTGTGTATTTTTGTAAAATATTTGACTTTTGATTTCTTTCTTTTTCCAAGT 701 consensus_7037#3 ------------------------------------------------------------ consensus_7037#1 CAGGGTGCTGTNN--------------------------------------------- 647 consensus_7037#2 ---------------------------------------------------------- consensus_7037#0 TTTCCCACTTTTGTTTGGCTGTAAAAATAAATTTAAAGCCCAAGGATAACATCGCGTG 759 consensus_7037#3 ---------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||