These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7044#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1364 fasta sequence [CAGATTCGGCACGATGGCATGTTTTATCTCAATTTGGTTTCCGCTTTGCTTGTGGCAGCAACTAGATGAAGCTTCACGAGCAAATGCTAGGCGTTTAGAAATAACCCGTGTGATGAAAGGGAGAAGAATTATCTCTCTCTCTCTCTCGTAAGATCAACCTACAAAAAAGACGTACCATCACCAATTGGCACAGAAACAAGTGCTCTTTTGCCCGTACACAACGTAGGAAAACGCTCAAAGCAGGAGAAAGTAACGAGAAGGATAACA-ACAGAA-AAAAGCAACAGAGAACAGTTTGCTATAAAGGAGACATCTGAAGAAGAGGAAAGTGTGAGAACAGATTTAAGACATGTCGAAC-T-TTTATGTGCCACCTGTATCGAGATACACACGTTTACGGTGTGTTT-GTAAGTCTGAGTGCTTGGGGCCATCTTCCACTGAATGTGCC-GTCTTTTC-TTTGGTAAATCAA-C-TCAAAAGCCTTGGTCCATATCCTTACTCGTGTGACCCAAATTTGCCTCTCCTGCGGTGTTTTTCCCTACCTTGTGTCTGGGTGGATCTCCTGTGCGTGTCAGGACGCCTGTTTCTGTTGCATCTGTAACATCTGTTTTGCACTATTTAAATTCGCAAACTGCTGATCACACATCCCTCCACCACGGTTTGTGCAACGAATGTATGGTATGGTATGGTGTCCTACATTTGGGCAACAACCCGTGCACTCTAGGGAAAGTGGGCACGGAACGAACGTTGAAAAGACACGGGTACCGAGAGGGAAATGTAGGGGCAAGGGGTTACATATACACACTTACACATCGTACACGTTAAGCTGTTATAGTGTTGTAAAATAATTATTAAACGCAAACATTGATACATTTCTTCATTCAGTTACCATGCCGCTTGACAGTAAGAAGCTAATGATGCTCCTAGCGGGGGAGAAGGGTAGGCAAATTGTTAGTGTAGGAGTCCTTACGANGGGTTTAAAGTTTTTTTTGTTCTTCTTCTTCTTCTTCTTCTTCTTATTGGGGTGGTAGTATNCGATACAGCTCCAGCACATCGACACATAAGATTTCTAGTTACAAAACCCCTTGTATGTAGTGGTCAAACAGTCAAACGCCTGTGATGCGTGGCACACATGGCACACATAANACGTAAACGTAATATTACAACTGCATACAACCTTCCCCACAGTCTCCCACACCTTTCCTACCCCATTATATGTGCATGCATACACTCGTAACCCATCTACTACTATCTACTACTGTGTTATGTTTTATTCAAAGTTTATCTATATTTATAGTGCAAATGAAAGCGGCAAACACGATGGGNTTTAGGGGCCTACCGATTAACCATTACNCAAACAAAACAGGAAGACC] [+] EMBL BX468152 [CAGATTCGGCACGATGGCATGTTTTATCTCAATTTGGTTTCCGCTTTGCTTGTGGCAGCAACTAGATGAAGCTTCACGAGCAAATGCTAGGCGTTTAGAAATAACCCGTGTGATGAAAGGGAGAAGAATTATCTCTCTCTCTCTCTCGTAAGATCAACCTACAAAAAAGACGTACCATCACCAATTGGGACAGAAACAAGTGCTCTTTTGCCCGTACACCACGTA GAAAACGCTCAAAGCA GAGAAAGTAACGAGAAGGATAACACACAGAA AAAAGCAACAGAGAACAGTTTGCTATAAAGGAGACATCTGAAGAAGAGGAAAGTGTGAGAACAGATTTNAGACATGTCGAACGTCTTTATGTGCCACCTGTATCGAGATACACACGTTTACGGTGTGTTTAGTAAGTCTGAGTGCTTGGGGCCATCTTCCACTGAATGTGCCGGTCTTTTCTTTTGGTAAATCAAGCGTCAAAAGCCTTGGTCC ] [+] EMBL BX627053 [ ATCAACCTACAAAAAAGACGTACCATCACCAATTGGCACAGAAACAAGTGCTCTTTTGCCCGTACACAACGTAGGAAAACGCTCAAAGCAGGAGAAAGTAACGAGAAGGATAACA ACAGAA AAAAGCAACAGAGAACAGTTTGCTATAAAGGAGACATCTGAAGAAGAGGAAAGTGTGAGAACAGATTTAAGACATGTCGAAC T TTTATGTGCCACCTGTATCGAGATACACACGTTTACGGTGTGTTT GTAAGTCTGAGTGCTTGGGGCCATCTTCCACTGAATGTGCC GTCTTTTC TTTGGTAAATCAA C TCAAAAGCCTTGCTCCATATCCTTACTCGTGTGACCCAAATTTGCCTCTCCTGCGGTGTTTTTCCCTACCTTGTGTCTGGGTGGATCTCCTGTGCGTGTCAGGACGCCTGTTTCTGTTGCATCTGTAACATCTGTTTTGCACTATTTAAATTCGCAAACTGCTGATCACACATCCCTCCACCACGGTTTGTGCAACGAATGTATGGTATGGTATGGTGTCCTACATTTGGGCAACAACCCGTGCACTCTAGGGAAAGTGGGCACGGAACGAACGTTGAAAAGACACGGGTACCGAGAGGGAAATGTAGGGGCAAGGGGTTACATATACACACTTACACATCGTACACGTTAAGCTGTTATAGTGTTGTAAAATAATTATTAAACGCAAACATTGATACATTTCTTCATTCAGTTACCATGCCGCTTGACAGTAAGAAGCTAATGATG ] [+] EMBL BX603078 [ AACCTACAAAAAAGACGTACCATCACCAATTGGCACAGAAACTAGTGCTCTTTTGCCCGTACACAAAGTAGGAAAACGCTCAAAGCAGGAGAAAGCAACGAGAAGGATAACA ACAGAAGAAAAGCAACAGAGAACAGTTTGCTATAAAGGAGACATCTGGAGAAGAGGAAAGTGTGAGAACCGATTTAAGACATGTCGAAC T ATTATGTGCCACCTATATCGAGATACACACGTTTACGGTGTGTTT GTAAGTCTGAGTGCTTGGGGCCATCTTCC ] [+] EMBL BX621167 [ TCCTGTGCGTGTCNGGACGCCTGTTTCTGTTGCATCTGTAACATCTGTTTTGCACTATTTAAATTCGCAAACTGCTGATCACACATCCCGCCGCCACGGTTTGTGCAACGAATG TGGTATGGTATGGTGTCCTACATTTGGGCAACAGCCCGTGCACTCTAGGGAAAGTGGGCACGGAACGAACGTTGAAAAGACACGNGTACCGAGAGGGAAATGTAGGGGCAAGGGGTTACATATACACACTTACACATCGTACACGTTAAGCCGTTATAGTGTTGTAAAATAATTATTAAACGCAAACATTGATACATTTCTTCATTCAGTTACCATGCCGCTTGACAGTAAGAAGCTAATGATGCTCCTAGCGGGGGAGAAGGGTAGGCAAATTGTTAGTGTAGGAGTCCTTACGANGGGTTTAAAGTTTTTTTTGTTCTTCTTCTTCTTCTTCTTCTTCTTATTGGGGTGGTAGTATNCGATACAGCTCCAGCACATCGACACATAAGATTTCTAGTTACAAAACCCCTTGTATGTAGTGGTCAAACAGTCAAACGCCTGTGATGCGTGGCACACATGGCACACATAANACGTAAACGTAATATTACAACTGCATACAACCTTCCCCACAGTCTCCCACACCTTTCCTACCCCATTATATGTGCATGCATACACTCGTAACCCATCTACTACTATCTACTACTGTGTTATGTTTTATTCAAAGTTTATCTATATTTATAGTGCAAATGAAAGCGGCAAACACGATGGGNTTTAGGGGCCTACCGATTAACCATTACNCAAACAAAACAGGAAGACC] consensusID : consensus_7044#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 761 fasta sequence [AGGCAGAATCGGCACGAGGAGGAATTATGCGGAAAATTTGACAGTTGCGAGAAGGGTAGGCAAATTGTTAGTGTAGTGAATCCTTACCACGGGTTTACAGTTTTTTTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTGGGGTGGTAGTATTCGATACAGCTCCAGCACATCGACACATAAGATTTCTAGTTACAAAACCCCTTGTATGTAGGTGGTCAAACAGTCAAACGCCTGTGATGCGTGGCACACATGGCACACATAAACGTAAACGTAATATTACAACTGCATACAACCTTCCCCACAGTCTCCCACACCTTTCCTACCCCATTATATGTGCATGCATACACTCGTAACCCATCTACTACTATCTACTACTGTGTTATGTTTTATTCAAAGTTTATCTATATTTATAGTGCAAATGANAGCGGCAAACACGATGGGTTTTAGGGCCCTATCGATTAACCATTACACAAAACAAAACAGGAAGACCCTAAAAGCAAATAAGCGGGAAGGTAAAAGTAAGCGAAAGTTTCAAAAAGAAACAGACAGGAAAAAAACAGCGTGGCAAGATAACGAAGAAACTAGCAAGAGATAACAGATAGAACAGGAAGGGCAGGTCGCGGGGCGGAAGTTAAGAACGACTTCAAGTCAAGACTTGAAATTGGGATTGACAGTGAACAGTTANAGGCGCTGTATTANGGGTGTTTGGCAAAAACGTGACGGCGTGGACTGTATAACATTCAAAGCCAGGNACGCCC] [+] EMBL BX468450 [AGGCAGAATCGGCACGAGGAGGAATTATGCGGAAAATTTGACAGTTGCGAGAAGGGTAGGCAAATTGTTAGTGTAGTGAATCCTTACCACGGGTTTACAGTTTTTTTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTGGGGTGGTAGTATTCGATACAGCTCCAGCACATCGACACATAAGATTTCTAGTTACAAAACCCCTTGTATGTAGGTGGTCAAACAGTCAAACGCCTGTGATGCGTGGCACACATGGCACACATAAACGTAAACGTAATATTACAACTGCATACAACCTTCCCCACAGTCTCCCACACCTTTCCTACCCCATTATATGTGCATGCATACACTCGTAACCCATCTACTACTATCTACTACTGTGTTATGTTTTATTCAAAGTTTATCTATATTTATAGTGCAAATGANAGCGGCAAACACGATGGGTTTTAGGGCCCTATCGATTAACCATTACACAAAACAAAACAGGAAGACCCTAAAAGCAAATAAGCGGGAAGGTAAAAGTAAGCGAAAGTTTCAAAAAGAAACAGACAGGAAAAAAACAGCGTGGCAAGATAACGAAGAAACTAGCAAGAGATAACAGATAGAACAGGAAGGGCAGGTCGCGGGGCGGAAGTTAAGAACGACTTCAAGTCAAGACTTGAAATTGGGATTGACAGTGAACAGTTANAGGCGCTGTATTANGGGTGTTTGGCAAAAACGTGACGGCGTGGACTGTATAACATTCAAAGCCAGGNACGCCC] consensusID : consensus_7044#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence [GATCGCCCGAGGTTGCACGGAACGAACGTTGAAAAGACACGGGTACGAGAGGGAAATGTAGGGGCAGGGTTACATATACACACTTACACATCGTACACGTTAAGCTGTTATAGTGTTGTAAAATAATTATTAAACGCAAACATTGATACATTTCTTCATTCAGTTACCATGACCGCTTGACAGTAAGAAGCTAATGATGCTCCTGGCGGGGGAGAAGGGTAGGCNAATTGTTAGTGTAGTGAATCCTTACCACGGGTTTACAGTTTTTTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTGGGGTGGTAGTATTCGATACAGCTCCAGCACATCGACACATAAGATTTCTAGTTACAAAACCCCTTGTATGTAGTGGTCAAACAGTCAAACGCCTGTGATGCGTGGCACACATGGCACACATAAACGTAAACGTAATATTACAACTGCATACAACCTTCCCCACAGTCTCCCACAC] [+] EMBL AL930636 [GATCGCCCGAGGTTGCACGGAACGAACGTTGAAAAGACACGGGTACGAGAGGGAAATGTAGGGGCAGGGTTACATATACACACTTACACATCGTACACGTTAAGCTGTTATAGTGTTGTAAAATAATTATTAAACGCAAACATTGATACATTTCTTCATTCAGTTACCATGACCGCTTGACAGTAAGAAGCTAATGATGCTCCTGGCGGGGGAGAAGGGTAGGCNAATTGTTAGTGTAGTGAATCCTTACCACGGGTTTACAGTTTTTTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTGGGGTGGTAGTATTCGATACAGCTCCAGCACATCGACACATAAGATTTCTAGTTACAAAACCCCTTGTATGTAGTGGTCAAACAGTCAAACGCCTGTGATGCGTGGCACACATGGCACACATAAACGTAAACGTAATATTACAACTGCATACAACCTTCCCCACAGTCTCCCACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7044#0 CAGATTCGGCACGATGGCATGTTTTATCTCAATTTGGTTTCCGCTTTGCTTGTGGCAGCA 60 consensus_7044#2 ------------------------------------------------------------ consensus_7044#1 ------------------------------------------------------------ consensus_7044#0 ACTAGATGAAGCTTCACGAGCAAATGCTAGGCGTTTAGAAATAACCCGTGTGATGAAAGG 120 consensus_7044#2 ------------------------------------------------------------ consensus_7044#1 ------------------------------------------------------------ consensus_7044#0 GAGAAGAATTATCTCTCTCTCTCTCTCGTAAGATCAACCTACAAAAAAGACGTACCATCA 180 consensus_7044#2 ------------------------------------------------------------ consensus_7044#1 ------------------------------------------------------------ consensus_7044#0 CCAATTGGCACAGAAACAAGTGCTCTTTTGCCCGTACACAACGTAGGAAAACGCTCAAAG 240 consensus_7044#2 ------------------------------------------------------------ consensus_7044#1 ------------------------------------------------------------ consensus_7044#0 CAGGAGAAAGTAACGAGAAGGATAACAACAGAAAAAAGCAACAGAGAACAGTTTGCTATA 300 consensus_7044#2 ------------------------------------------------------------ consensus_7044#1 ------------------------------------------------------------ consensus_7044#0 AAGGAGACATCTGAAGAAGAGGAAAGTGTGAGAACAGATTTAAGACATGTCGAACTTTTA 360 consensus_7044#2 ------------------------------------------------------------ consensus_7044#1 ------------------------------------------------------------ consensus_7044#0 TGTGCCACCTGTATCGAGATACACACGTTTACGGTGTGTTTGTAAGTCTGAGTGCTTGGG 420 consensus_7044#2 ------------------------------------------------------------ consensus_7044#1 ------------------------------------------------------------ consensus_7044#0 GCCATCTTCCACTGAATGTGCCGTCTTTTCTTTGGTAAATCAACTCAAAAGCCTTGGTCC 480 consensus_7044#2 ------------------------------------------------------------ consensus_7044#1 ------------------------------------------------------------ consensus_7044#0 ATATCCTTACTCGTGTGACCCAAATTTGCCTCTCCTGCGGTGTTTTTCCCTACCTTGTGT 540 consensus_7044#2 ------------------------------------------------------------ consensus_7044#1 ------------------------------------------------------------ consensus_7044#0 CTGGGTGGATCTCCTGTGCGTGTCAGGACGCCTGTTTCTGTTGCATCTGTAACATCTGTT 600 consensus_7044#2 ------------------------------------------------------------ consensus_7044#1 ------------------------------------------------------------ consensus_7044#0 TTGCACTATTTAAATTCGCAAACTGCTGATCACACATCCCTCCACCACGGTTTGTGCAAC 660 consensus_7044#2 ------------------------------------------------------------ consensus_7044#1 ------------------------------------------------------------ consensus_7044#0 GAATGTATGGTATGGTATGGTGTCCTACATTTGGGCAACAACCCGTGCACTCTAGGGAAA 720 consensus_7044#2 --------------------------------------------------GATCGCCCGA 10 consensus_7044#1 ------------------------------------------------------------ consensus_7044#0 GTGGGCACGGAACGAACGTTGAAAAGACACGGGTACCGAGAGGGAAATGTAGGGGCAAGG 780 consensus_7044#2 GGTTGCACGGAACGAACGTTGAAAAGACACGGGTAC-GAGAGGGAAATGTAGGGGCA--G 67 consensus_7044#1 ------------------------------------------------------------ consensus_7044#0 GGTTACATATACACACTTACACATCGTACACGTTAAGCTGTTATAGTGTTGTAAAATAAT 840 consensus_7044#2 GGTTACATATACACACTTACACATCGTACACGTTAAGCTGTTATAGTGTTGTAAAATAAT 127 consensus_7044#1 ------------------------------------------------------------ consensus_7044#0 TATTAAACGCAAACATTGATACATTTCTTCATTCAGTTACCATG-CCGCTTGACAGTAAG 899 consensus_7044#2 TATTAAACGCAAACATTGATACATTTCTTCATTCAGTTACCATGACCGCTTGACAGTAAG 187 consensus_7044#1 ----------------------------------AGGCAGAATCGGCACGAGGAGGAATT 26 ** * ** * * * * * consensus_7044#0 AAGCTAATGATGCTCCTAGCGGGGGAGAAGGGTAGGCAAATTGTTAGTGTAG-GAGTCCT 958 consensus_7044#2 AAGCTAATGATGCTCCTGGCGGGGGAGAAGGGTAGGCNAATTGTTAGTGTAGTGAATCCT 247 consensus_7044#1 ATGCGGAAAATTTGACAGTTGCG--AGAAGGGTAGGCAAATTGTTAGTGTAGTGAATCCT 84 * ** * ** * * * ************ ************** ** **** consensus_7044#0 TACGANGGGTTTAAAGTTTTTT--TTGTTCTTCTTCTTCTTCTTCTTCTTCTTATTGGGG 1016 consensus_7044#2 TACCACGGGTTTACAGTTTTTTG-TTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTGGGG 306 consensus_7044#1 TACCACGGGTTTACAGTTTTTTTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTGGGG 144 *** * ******* ******** ** ********************************* consensus_7044#0 TGGTAGTATNCGATACAGCTCCAGCACATCGACACATAAGATTTCTAGTTACAAAACCCC 1076 consensus_7044#2 TGGTAGTATTCGATACAGCTCCAGCACATCGACACATAAGATTTCTAGTTACAAAACCCC 366 consensus_7044#1 TGGTAGTATTCGATACAGCTCCAGCACATCGACACATAAGATTTCTAGTTACAAAACCCC 204 ********* ************************************************** consensus_7044#0 TTGTATGTAG-TGGTCAAACAGTCAAACGCCTGTGATGCGTGGCACACATGGCACACATA 1135 consensus_7044#2 TTGTATGTAG-TGGTCAAACAGTCAAACGCCTGTGATGCGTGGCACACATGGCACACATA 425 consensus_7044#1 TTGTATGTAGGTGGTCAAACAGTCAAACGCCTGTGATGCGTGGCACACATGGCACACATA 264 ********** ************************************************* consensus_7044#0 ANACGTAAACGTAATATTACAACTGCATACAACCTTCCCCACAGTCTCCCACACCTTTCC 1195 consensus_7044#2 AA-CGTAAACGTAATATTACAACTGCATACAACCTTCCCCACAGTCTCCCACAC------ 478 consensus_7044#1 AA-CGTAAACGTAATATTACAACTGCATACAACCTTCCCCACAGTCTCCCACACCTTTCC 323 * *************************************************** consensus_7044#0 TACCCCATTATATGTGCATGCATACACTCGTAACCCATCTACTACTATCTACTACTGTGT 1255 consensus_7044#2 ------------------------------------------------------------ consensus_7044#1 TACCCCATTATATGTGCATGCATACACTCGTAACCCATCTACTACTATCTACTACTGTGT 383 consensus_7044#0 TATGTTTTATTCAAAGTTTATCTATATTTATAGTGCAAATGAAAGCGGCAAACACGATGG 1315 consensus_7044#2 ------------------------------------------------------------ consensus_7044#1 TATGTTTTATTCAAAGTTTATCTATATTTATAGTGCAAATGANAGCGGCAAACACGATGG 443 consensus_7044#0 GNTTTAGGGGCCTACCGATTAACCATTACNCAAA-CAAAACAGGAAGACC---------- 1364 consensus_7044#2 ------------------------------------------------------------ consensus_7044#1 GTTTTAGGGCCCTATCGATTAACCATTACACAAAACAAAACAGGAAGACCCTAAAAGCAA 503 consensus_7044#0 ------------------------------------------------------------ consensus_7044#2 ------------------------------------------------------------ consensus_7044#1 ATAAGCGGGAAGGTAAAAGTAAGCGAAAGTTTCAAAAAGAAACAGACAGGAAAAAAACAG 563 consensus_7044#0 ------------------------------------------------------------ consensus_7044#2 ------------------------------------------------------------ consensus_7044#1 CGTGGCAAGATAACGAAGAAACTAGCAAGAGATAACAGATAGAACAGGAAGGGCAGGTCG 623 consensus_7044#0 ------------------------------------------------------------ consensus_7044#2 ------------------------------------------------------------ consensus_7044#1 CGGGGCGGAAGTTAAGAACGACTTCAAGTCAAGACTTGAAATTGGGATTGACAGTGAACA 683 consensus_7044#0 ------------------------------------------------------------ consensus_7044#2 ------------------------------------------------------------ consensus_7044#1 GTTANAGGCGCTGTATTANGGGTGTTTGGCAAAAACGTGACGGCGTGGACTGTATAACAT 743 consensus_7044#0 ------------------ consensus_7044#2 ------------------ consensus_7044#1 TCAAAGCCAGGNACGCCC 761 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||