These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7046#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1216 fasta sequence [CCGCTTCATCAGTGGCAACATCTTCCTCGCTCCGATCCTGCGTGCCGTTCTACCGCGTTCTTCCTCCACCGCCAAGGGCAAGACCGAGGCAGCTCCAGCCGGTGCTCCCGCCGCCACTGCGGAAGTGAAGAAAGACAACTAAACACACACACACACACCATTAAACCTAGCACTAACGTACTCTAGCGCGCCGTTTTTTTTTTTTGCGCGACCGTGACGCGAGATCTCGTTTTTAAGAAAGCGAAAATAGGCGGCCTCTGCTCCAACACACAAACACACAGAGAGACACCACACAAATGCAAAGCCTCCACCACAACATTGTTTTTTTTCTCCAATTTTATATGTAAAAACAAAATCAGATGCAAATACGCTAGAACGCGCGCGCAACGAAAAGTAATGCTCCAAGCGGCCGGACCTCTTAACAAACACACACAAGTATATTCGAAGCCATCCCTGTTTCTTCTTGCACGTTGAAATACGCATAGTTTATCGACACAAACACACACACTCACACACGCGGCTAGCCTATTAACTATACTTATAGAAATGCGCTCATACACTGTGTTGCTTATCGAGATCGAGACCGAGAAGTGCGGACGAAGAAGACAACAACGATGATGATGAAGATCATCGCACGGGGCGCCGCGATAAAGACAAATTTTGCACCCACCCCTCCGGGGGAGTTACTGCTTTAATGCTCCTCCTCTAAAAACTATACTCCTCCTCCTAGCTATCCTTATCTAATAACACTTATTCTGCCTCGTTATCATCTTCCAGCGTTTAAAGAAAGCGAAACCCTTCGGTGTGAGCGAATATTTACCCAAAATATTGTTGGTGTACTCCAGAGAGCGAACTCACGCTATATTTACCCACTGTTTTCCGACCTATTCAAGCTCGCGT-TCAAGCCCACAAAGCTCACCGAAGAAGAATAGCGGGACAGGAGAGAAAGCAGTAGCGCACCAAACCCGTCTTACAAATTCTTAAAGTTGATGAGCTTTTTTTAACAAAA-AAAACTGCGATTAATAG--ACACACACATCCGGCCGAGGGGATGTTAGAGGAGAACACGTCGTTCGAGATTTGGGGAGAGAGGGGAAAAGGGAGTTAATTTTAGAATCCACGATACCCTTAGAATAAAGCAGTACTAGTCATATTCTTCAATTCGAGAGACATGATACAAGTTAAAAAAGAGAAAATTAAAACGAAACAAATTAAACCA] [+] EMBL BM634540 [CCGCTTCATCAGTGGCAACATCTTCCTCGCTCCGATCCTGCGTGCCGTTCTACCGCGTTCTTCCTCCACCGCCAAGGGCAAGACCGAGGCAGCTCCAGCCGGTGCTCCCGCCGCCACTGCGGAAGTGAAGAAAGACAACTAAACACACACACACACACCATTAAACCTAGCACTAACGTACTCTAGCGCGCCGTTTTTTTTTTTTGCGCGACCGTGACGCGAGATCTCGTTTTTAAGAAAGCGAAAATAGGCGGCCTCTGCTCCAACACACAAACACACAGAGAGACACCACACAAATGCAAAGCCTCCACCACAACATTGTTTTTTTTCTCCAATTTTATATGTAAAAACAAAATCAGATGCAAATACGCTAGAACGCGCGCGCAACGAAAAGTAATGCTCCAAGCGGCCGGACCTCTTAACAAACACACACAAGTATATTCGAAGCCATCCCTGTTTCTTCTTGCACGTTGAAATACGCATAGTTTATCGACACAAACACACACACTCACACACGCGGCTAGCCTATTAACTATACTTATAGAAATGCGCTCATACACTGTGTTGCTTATCGAGATCGAGACCGAGAAGTGCGGCCGAAGAAGACAACAACGATGATGATGAAGATCATCGCACGGGGCGCCGCGATAAAGACAAATTTTGCACCCCCTCATCCGGGGGAGGTACTGCTTTAATGCTCCTCCTCTAAAAc ] [+] EMBL BX621561 [ CACACACTCACACACGCGGCTAGCCTATTAACTATACTTATAGAAATGCGCTCATACACTGTGTTGCTTATCGAGATCGAGACCGAGAAGTGCGGACGAAGAAGACAACAACGATGATGATGAAGATCATCGCACGGGGCGCCGCGATAAAGACAAATTTTGCACCCACCCCTCCGGGGGAGTTACTGCTTTAATGCTCCTCCTCTAAAAACTATACTCCTCCTCCTAGCTATCCTTATCTAATAACACTTATTCTGCCTCGTTATCATCTTCCAGCGTTTAAAGAAAGCGAAACCCTTCGGTGTGAGCGAATATTTACCCAAAATATTGTTGGTGTACTCCAGAGAGCGAACTCACGCTATATTTACCCACTGTTTTCCGACCTATTCAAGCCCGCGTGAAAAGCCCACAAAGCTCACTGAAGAAGAATCGCGGGACAGGAGAGAAAGCAGTTGCGCACCAAACCCGTCTTACAAATTCTTAAAGTTGATGAGCTTTTTTTAACAAAA AAAACTACAATTAATAG ACACACACATCCGGCCGAGGGGATGTTAGGGGAGAACACGTCGTTCGAGATTTGGGGAGAGAGGGGAAAAGGGAGTTAATTTTAGAATCCACGATACCCTTAGAATAAAGCAGTACTAGTCATATTCTTCAATTCGAGAGACATGA ] [-] EMBL CNS08SZ0 [ aaAGAAGTGCGGACGAAGAAGACAACAACGATGATGATGAAGATCATCGCACGGGGCGCCGCGATAAAGACAATTTTTGCACCC CCCCTCCGGGGGAGTTACAAATTTAATGCTCCTCCTCTAAAAACTATACTCCTCCTCCTAGCTATCCTTATCTAATAACACTTATTCTGCCTCGTTATCATCTTCCAGCGTTTAAAGAAAGCGAAA CCTTCGGTGTGAGCGAATATTTACCCAAAATATTGTTGGTGTACTCCAGAGAGCGAACTCACACTATATTTACCCACTG TTTCCGACCTATTCAAGCTCGCGT TCAAGCCCACAAAGCTCACCGAAGAAGAATAGCGGGACAGGAGAGAAAGCAGTAGCGCACCAAACCCGTCTTACAAATTCTTAAAGTTGATGAGCTTTTTTTAACAAAACAAAACTGCGATTAATAGACACACACACATCCGGCCGAGGGGATGTTAGAGGAGAACACGTCGTTCGAGATTTGGGGAGAGAGGGGAAAAGGGAGTTAATTTTAGAATCCACGATACCCTTAGAATAAAGCAGTACTAGTCATATTCTTCGATTCGAGAGACATGATACAAGTTAAAAAAGAGAAAATTAAAACGAAACAAATTAAACCA] [+] EMBL BX616366 [ GGACGAAGAAGACAACAACGATGATGATGAAGATCATCGCACGGGGCGCCGCGATAAAGACAAATTTTGCACCCACCCCTCCGGGGGAGTTACTGCTTTAATGCTCCTCCTCTAAAAACTATACTCCTCCTCCTAGCTATCCTTATCTAATAACACTTATTCTGCCTCGTTATCATCTTCCAGCGTTTAAAGAAAGCGAAACCCTTCGGTGTGAGCGAATATTTACCCAAAATATTGTTGGTGTACTCCAGAGAGCGAACTCACGCTATATTTACCCACTGTTTTCC ] [+] EMBL BM618007 [ ccgGAAGATCATCGCAAGGGGCGCCGCGATAAAGACAAATTTTGCACCCACCCCTCCGGGGGAGTTACTGCTTTAATGCTCCTCCTCTAAAAACTATACTCCTCCTCCTAGCTATCCTTATCTAATAACACTTATTCTGCCTCGTTATCATCTTCCAGCGTTTAAAGAAAGCGAAACCCTTCGGTGTGAGCGAATATTTACCGAAAACAATGTT GTGTACTCCAGAGAGCGAACTCACACTATATTTACCCACTGTTTTCCGACCTATTCAAGCTCGCGT TCAAGCCCACAAAGGTCACCGAAGAAGAATAGCGTGACAGGAGAGAAAGCAGTAGCGCACCAAACCCGTCTTACAAATTCTTAAAGTTGATGAGC TTTTTTAACAAAACAAAACTGCGATTAATAGACACACACACATCCGGCCGAGGGGATGTTAGAGGAGAACACGTCGTTCGAGATTTGGGGAGAGAGGGGAAAAGGGAGTTAATTTTAGAATCCACGATACCCTTAGAATAAAGCAGTACTAGTCATATTCTTCAATTCGAGAGACATGATACAAGTTAAAAAAGAGAAAATTAAAACGAAACAAATT ] consensusID : consensus_7046#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence [GGTGCCCTTCCANCCGCCNGGTCTACGGACGACCGGTATCNTAACGGCCCTGGGGTGACCANCGGCGAAGGACCGGGACATACCTGCCATCGGTACTGCCGGTCANGCCCAGNATACGCCCCCCGGTTTCTTGTACCCACATAACGTTTTCCTCTACAACGCTNTCGANTTGAGCCCTTTTGTTTTGGAGACCCNAATCAACCACANACACCTGCGGATTTAAACTACTGACCACTGCACCACCACATCCGGCCGAGGGCGACTGTTAGAGGAGGATACCACGTTNCGTTCCGAGACTTTGGGGACGAGAGGCGGAAAAGGGAGTTAATTTTAGAATCCACGATACCCTTAGAATAAAGCAGTACTAGTCATATTCTTCGATTCGAGAGACATGATACCAAGTTAAAAAAGAGAAAATTAAAACGAAACCAAAGNTGAACCCAAACAAATAAAAAATAACCAACAAAAGACGACTGTG] [-] EMBL BX466897 [GGTGCCCTTCCANCCGCCNGGTCTACGGACGACCGGTATCNTAACGGCCCTGGGGTGACCANCGGCGAAGGACCGGGACATACCTGCCATCGGTACTGCCGGTCANGCCCAGNATACGCCCCCCGGTTTCTTGTACCCACATAACGTTTTCCTCTACAACGCTNTCGANTTGAGCCCTTTTGTTTTGGAGACCCNAATCAACCACANACACCTGCGGATTTAAACTACTGACCACTGCACCACCACATCCGGCCGAGGGCGACTGTTAGAGGAGGATACCACGTTNCGTTCCGAGACTTTGGGGACGAGAGGCGGAAAAGGGAGTTAATTTTAGAATCCACGATACCCTTAGAATAAAGCAGTACTAGTCATATTCTTCGATTCGAGAGACATGATACCAAGTTAAAAAAGAGAAAATTAAAACGAAACCAAAGNTGAACCCAAACAAATAAAAAATAACCAACAAAAGACGACTGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7046#0 CCGCTTCATCAGTGGCAACATCTTCCTCGCTCCGATCCTGCGTGCCGTTCTACCGCGTTC 60 consensus_7046#1 ------------------------------------------------------------ consensus_7046#0 TTCCTCCACCGCCAAGGGCAAGACCGAGGCAGCTCCAGCCGGTGCTCCCGCCGCCACTGC 120 consensus_7046#1 ------------------------------------------------------------ consensus_7046#0 GGAAGTGAAGAAAGACAACTAAACACACACACACACACCATTAAACCTAGCACTAACGTA 180 consensus_7046#1 ------------------------------------------------------------ consensus_7046#0 CTCTAGCGCGCCGTTTTTTTTTTTTGCGCGACCGTGACGCGAGATCTCGTTTTTAAGAAA 240 consensus_7046#1 ------------------------------------------------------------ consensus_7046#0 GCGAAAATAGGCGGCCTCTGCTCCAACACACAAACACACAGAGAGACACCACACAAATGC 300 consensus_7046#1 ------------------------------------------------------------ consensus_7046#0 AAAGCCTCCACCACAACATTGTTTTTTTTCTCCAATTTTATATGTAAAAACAAAATCAGA 360 consensus_7046#1 ------------------------------------------------------------ consensus_7046#0 TGCAAATACGCTAGAACGCGCGCGCAACGAAAAGTAATGCTCCAAGCGGCCGGACCTCTT 420 consensus_7046#1 ------------------------------------------------------------ consensus_7046#0 AACAAACACACACAAGTATATTCGAAGCCATCCCTGTTTCTTCTTGCACGTTGAAATACG 480 consensus_7046#1 ------------------------------------------------------------ consensus_7046#0 CATAGTTTATCGACACAAACACACACACTCACACACGCGGCTAGCCTATTAACTATACTT 540 consensus_7046#1 ------------------------------------------------------------ consensus_7046#0 ATAGAAATGCGCTCATACACTGTGTTGCTTATCGAGATCGAGACCGAGAAGTGCGGACGA 600 consensus_7046#1 ------------------------------------------------------------ consensus_7046#0 AGAAGACAACAACGATGATGATGAAGATCATCGCACGGGGCGCCGCGATAAAGACAAATT 660 consensus_7046#1 ------------------------------------------------------------ consensus_7046#0 TTGCACCCACCCCTCCGGGGGAGTTACTGCTTTAATGCTCCTCCTCTAAAAACTATACTC 720 consensus_7046#1 ------------------------------------------------------------ consensus_7046#0 CTCCTCCTAGCTATCCTTATCTAATAACACTTATTCTGCCTCGTTATCATCTTCCAGCGT 780 consensus_7046#1 ------------------------------------------------------------ consensus_7046#0 TTAAAGAAAGCGAAACCCTTCGGTGTGAGCGAATATTTACCCAAAATATTGTTGGTGTAC 840 consensus_7046#1 --GGTGCCCTTCCANCCGCCNGGTCTACGGACGACCGGTATCNTAACGGCCCTGGGGTGA 58 * * ** *** * * * ** *** ** consensus_7046#0 TCCAGAGAGCGAACTCACGCTATATTTACCCACTGTTTTCCGACCTATTCAAGCTCGCGT 900 consensus_7046#1 CCANCGGCGAAGGACCGGGACATACCTGCCATCGGTACT----GCCGGTCANGCCCA-GN 113 * * * * * *** * ** * ** * * *** ** * * consensus_7046#0 TCAAGCCCACAAAGCTCACCGAAGAAGAATAGCGGGACAGGAGAGAAAGCAGTAGCGCAC 960 consensus_7046#1 ATACGCCCCCCG-GTTTCTTGTACCCACATAACGTTTTCCTCTACAACGC--TNTCGANT 170 * **** * * * * * *** ** * ** ** * ** consensus_7046#0 CAAACCC----GTCTTACAAATTCTTAAAGTTGATGAGCTTTTTTTAACAAAAAAAACTG 1016 consensus_7046#1 TGAGCCCTTTTGTTTTGGAGACCCNAATCAACCACANACACCTGCGGATTTAAACTACTG 230 * *** ** ** * * * * * * * * *** **** consensus_7046#0 CGATTAATAGACACACACATCCGGCCGAGGGGA--TGTTAGAGGAGAACACGTCGTTC-- 1072 consensus_7046#1 --ACCACTGCACCACCACATCCGGCCGAGGGCGACTGTTAGAGGAGGATACCACGTTNCG 288 * * * ** **************** *********** * ** **** consensus_7046#0 ----GAGA-TTTGGGGA-GAGAGG-GGAAAAGGGAGTTAATTTTAGAATCCACGATACCC 1125 consensus_7046#1 TTCCGAGACTTTGGGGACGAGAGGCGGAAAAGGGAGTTAATTTTAGAATCCACGATACCC 348 **** ******** ****** *********************************** consensus_7046#0 TTAGAATAAAGCAGTACTAGTCATATTCTTCAATTCGAGAGACATGATAC-AAGTTAAAA 1184 consensus_7046#1 TTAGAATAAAGCAGTACTAGTCATATTCTTCGATTCGAGAGACATGATACCAAGTTAAAA 408 ******************************* ****************** ********* consensus_7046#0 AAGAGAAAATTAAAACGAAAC--AAATTAAACCA-------------------------- 1216 consensus_7046#1 AAGAGAAAATTAAAACGAAACCAAAGNTGAACCCAAACAAATAAAAAATAACCAACAAAA 468 ********************* ** * **** consensus_7046#0 ---------- consensus_7046#1 GACGACTGTG 478 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||