These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_705#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [CCGCCCACGCGTCCGGCAGCATCAGCAACACCAGCAGCAGCAGCAACACCAGCAGCAAAAGCAAACCCCCCCCCCCCCCCCCAAAAACCCTAGATTTTATTGTTCAACTAGCGCGATACCACAAGTCCACAATTTGAATGGCTAAACGAAAATACCACACCGTAAACTAGCATCAGCAGCAGCAGCAGCAACAAGAAGAAGAAAAAGAAGAAGAGCAACAACAGCAACAACAACCTTATCTTAATCGATAATCAAAAAAAAACTCCCCGTTGAGAGACTCACACGCCACCATCACGGGCGCGAAACTGCTTCAACTGTTCAACTACACTCAGTTTAGGGAAGTTTAGGGTAATGCAAAACAGCACTCCAATTGCACCAATTGCAAAACCAAACCACACTTACAGACACGTACAGGACGGCTGACCCTTGCTCTGGAAGCTATCGGTGAAGCATGGCAAAGACATTGCTCGATAGTAATATTAGTAGCAGGTTTAGCGGTTTAGCGT] [+] EMBL BM645267 [CCGCCCACGCGTCCGGCAGCATCAGCAACACCAGCAGCAGCAGCAACACCAGCAGCAAAAGCAAACCCCCCCCCCCCCCCCCAAAAACCCTAGATTTTATTGTTCAACTAGCGCGATACCACAAGTCCACAATTTGAATGGCTAAACGAAAATACCACACCGTAAACTAGCATCAGCAGCAGCAGCAGCAACAAGAAGAAGAAAAAGAAGAAGAGCAACAACAGCAACAACAACCTTATCTTAATCGATAATCAAAAAAAAACTCCCCGTTGAGAGACTCACACGCCACCATCACGGGCGCGAAACTGCTTCAACTGTTCAACTACACTCAGTTTAGGGAAGTTTAGGGTAATGCAAAACAGCACTCCAATTGCACCAATTGCAAAACCAAACCACACTTACAGACACGTACAGGACGGCTGACCCTTGCTCTGGAAGCTATCGGTGAAGCATGGCAAAGACATTGCTCGATAGTAATATTAGTAGCAGGTTTAGCGGTTTAGCGT] consensusID : consensus_705#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [CCGCATATGTATATATGTATGTGCGTATGTATGCAAAATGCAAAGAATCCTCCTGGGGCGGGTGGTGGTATCGAGGAAGAAGGAAGAGTGTATCAAAGCCCCCCCATAAAGGGCGTCAATCCTGGGTGTGGATGAAACCGAAACCCAGCCACACAACCCCACAGACAAACACACACGCGTATATATATATAAATAATAGGCGAAGATCGTGCAGCCAGCTCGAAAGTATTAACTTAGACGGACAGAGGACAGAGCACAGAGGCACAGGAGTAGCAAAAGCGAAGAGGTGGCAAAAGCAAACCCTCCCCCCCCCCCCCCCCCAAAAAACCCTAGATTTTATTGTTCAACTAGCGCGATACCACAAGCCCACAATTTGA] [+] EMBL BM648112 [CCGCATATGTATATATGTATGTGCGTATGTATGCAAAATGCAAAGAATCCTCCTGGGGCGGGTGGTGGTATCGAGGAAGAAGGAAGAGTGTATCAAAGCCCCCCCATAAAGGGCGTCAATCCTGGGTGTGGATGAAACCGAAACCCAGCCACACAACCCCACAGACAAACACACACGCGTATATATATATAAATAATAGGCGAAGATCGTGCAGCCAGCTCGAAAGTATTAACTTAGACGGACAGAGGACAGAGCACAGAGGCACAGGAGTAGCAAAAGCGAAGAGGTGGCAAAAGCAAACCCTCCCCCCCCCCCCCCCCCAAAAAACCCTAGATTTTATTGTTCAACTAGCGCGATACCACAAGCCCACAATTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_705#0 CCGCCCACGCGTCCGGCAGCATCAGCAACACCAGCAGCAGCAGCAACACCAGCAGCAAAA 60 consensus_705#1 ------------------------------------------------------------ consensus_705#0 GCAAACCCCCCCCCCCCCCCCCAAAAACCCTAGATTTTATTGTTCAACTAGCGCGATACC 120 consensus_705#1 ----------------------------------------------------------CC 2 ** consensus_705#0 ACAAGTCCACAATTTGAATGGCTAAACGAAAATACCACACCGTAAACTAGCATCAGCAGC 180 consensus_705#1 GCATATGTATA-TATGTATGTGCGTATGTATGCAAAATGCAAAGAATCCTCCTGGGGCG- 60 ** * * * * ** *** * * * * * * ** * * * * consensus_705#0 AGCAGCAGCAACAAGAAGAAGAAAAAGAAGAAGAGCAACAACAGCAACAACAACCTTA-T 239 consensus_705#1 GGTGGTGGTATCGAGGAAGAAGGAAGAGTGTATCAAAGCCCCCCCATAAAGGGCGTCAAT 120 * * * * * ** * * ** * * * * * ** ** * * * * consensus_705#0 CTTAATCGATAATCAAAAAAAAACTCCCCGTTGAGAGACTCACACGCCACCATCACGGGC 299 consensus_705#1 CCTGGGTGTGGATGAAACCGAAACCCAGC-CACACAACCCCACAGACAAACA-CACACGC 178 * * * ** *** **** * * * * * **** * * ** *** ** consensus_705#0 GCGAAACTGCTTCAACTGTTCAACTACACTCAGTTTAGGGAAGTTTAGGGTAATGCAAAA 359 consensus_705#1 GTATATATA-TATAAATAATAGGCGAAGATC-GTGCAGCCAGCTCGAAAGTATT---AAC 233 * * * * ** * * * * ** ** ** * * * *** * ** consensus_705#0 CAGCACTCCAATTGCACCAATTGCAAAACCAAACCACACTTACAGACACGTACAGG---- 415 consensus_705#1 TTAGACGGACAGAGGACAGAGCACAGAGGCACA--GGAGTAGCAAAAGCGAAGAGGTGGC 291 ** * * ** * ** * ** * * * ** * ** * *** consensus_705#0 -ACGGCTGACCCTTGCTCTGGAAGCTATCGGTGAAGCATGGCAAAGACATTGCTCGATAG 474 consensus_705#1 AAAAGCAAACCCTCCCCCCCCCCCCCCCCCAAAAAACCCTA-GATTTTATTGTTCAACTA 350 * ** ***** * * * * ** * * **** ** * consensus_705#0 TAATATTAGTAGCAGGTTTAGCGGTTTAGCGT 506 consensus_705#1 GCGCGATACCA-CAAGCCCA-CAATTTGA--- 377 ** * ** * * * *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||