These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7053#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 865 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGCAAGCACAAGAACGGGAAAGTTTGCGGTCGGATTTACGGCGTTCGCCTTTTTGTTTATTCTGATCGCTTTCTGCTCTCCCTACTGGCTACAAACCGATGGCGAACTGGAGCATCCAAAGTTTACCAATTTAGGACTTTGGGAGCTGTGCTTGCGCAACTTCCAGGACATTCACCGATGGTACGACTATCCGTTCAATGGCTGCATGTGGATATTCGAGGAGGAGTACTACATCATCCACGACTACATACTGCCCGGGTTCTTCATCGCCGTGCAG-TTCTTTTTCACGCTCTGCTTCACGCTGCTACTGATGGGCGTGATCATGACGCTGATGTTCTTGAGCTGCTCCCGGGACAACGATCGCTACATTATGCTGCTGCTGACGAACGGGACGGTGCTGCTGCTCGCTGCCCTGTGCGGGCTGATAGCGGTGGCCACGTTCGGCTGCTATGGCGATAGCCGCGACTGGATGCCGAACTGGGAGCACAACGATATGGGCTGGTCGTTCGCGCTGGGCGTCGTCGGCACGTTCGCCCTGTTCCCGGCAGGCGTCCTGTTCATCGTCGAAGCGCGCCGGGCCACGTACCGGAGGCTGAATAGCATTGCCAACACGGAGATGGCCGCTGCGTACACGATGGACGAGCGGGAAGTATCGCGGTGGACATACCGATATTTTAGGGCGTTCGCAACCAGGCCAAACATTCCACGTTCCACGACCGGTCGGAGAGAGTCCTCTGTTCAAGAAGATGCTCTTTCCCCCCCGTGAACGTATAACAATGCCTTGCTAGAATAGATTTAAGAACGTTTTTTTACATCCACAACAATTGACAGCCGTTTT] [+] EMBL BM644399 [CCGCGGACGCGTGGGCGGACGCGTGGGCGCAAGCACAAGAACGGGAAAGTTTGCGGTCGGATTTACGGCGTTCGCCTTTTTGTTTATTCTGATCGCTTTCTGCTCTCCCTACTGGCTACAAACCGATGGCGAACTGGAGCATCCAAAGTTTACCAATTTAGGACTTTGGGAGCTGTGCTTGCGCAACTTCCAGGACATTCACCGATGGTACGACTATCCGTTCAATGGCTGCATGTGGATATTCGAGGAGGAGTACTACATCATCCACGACTACATACTGCCCGGGTTCTTCATCGCCGTGCAG TTCTTTTTCACGCTCTGCTTCACGCTGCTCCTGATGGGCGTGATCATGACGCTGATGTTTTTGAGCTGCTCACGGGACAACGATCGCTACATTATGCTGCTGCTGACGAAC ] [+] EMBL BM645942 [ ccGGGCGCAAGCACAAGAACGGGAAAGTTTGCGGTCGGATTTACGGCGTTCGCCTTTTTGTTTATTCTGATCGCTTTCTGCTCTCCCTACTGGCTACAAACCGATGGCGAACTGGAGCATCCAAAGTTTACCAATTTAGGACTTTGGGAGCTGTGCTTGCGCAACTTCCAGGACATTCACCGATGGTACGACTATCCGTTCAATGGCTGCATGTGGATATTCGAGGAGGAGTACTACATCATCCACGACTACATACTGCCCGGGTTCTTCATCGCCGTGCAG TTCTTTTTCACGCTCTGCTTCACGCTGCTACTGATGGGCGTGATCATGACGCTGATGTTCTTGAGCTGCTCCCGGGACAACGATCGCTACATTATGCTGCTGCTGACGAACGGG ] [+] EMBL BM631680 [ ccGCGCAAGCACAAGAACGGGAAAGTTTGCGGTCGGATTTACGGCGTTCGCCTTTTTGTTTATTCTGATCGCTTTCTGCTCTCCCTACTGGCTACAAACCGATGGCGAACTGGAGCATCCAAAGTTTACCAATTTAGGACTTTGGGAGCTGTGCTTGCGCAACTTCCAGGACATTCACCGATGGTACGACTATCCGTTCAATGGCTGCATGTGGATATTCGAGGAGGAGTACTACATCATCCACGACTACATACTGCCCGGGTTCTTCATCGCCGTGCAG TTCTTTTTCACGCTCTGCTTCACGCTGCTACTGATGGGCGTGATCATGACGCTGATGTTCTTGAGCTGCTCCCGGGACAACGATCGCTACATTATGCTGCTGCTGACGAACGGGACGGTGCTGCTGCTCGCTGCCCTGTGCGGGCTGATAGCGGTGGCCACGTTCGGCTGCTATGGCGATAGCCGCGACTGGATGCCGAACTGGGAGCACAACGATATGGGCTGGTCGTTCGCGCTGGGCGTCGTCGGCACGTTCGCCCTGTTCCCGGCAGGCGTCCTGTTCATCGTCGAAGCGCGCCGGGCCACGTACCGGAGGCTGAATAGCATTGCCAACACGGAGA ] [+] EMBL BM618420 [ ccgCAAGAACGGGAAAGTTTGCGGTCGGATTTACGGCGTTCGCCTTTTTGTTTATTCTGATCGCTTTCTGCTCTCCCTACTGGCTACAAACCGATGGCGAACTGGAGCATCCAAAGTTTACCAATTTAGGACTTTGGGAGCTGTGCTTGCGCAACTTCCAGGACATTCACCGATGGTACGACTATCCGTTCAATGGCTGCATGTGGATATTCGAGGAGGAGTACTACATCATCCACGACTACATACTGCCCGGGTTCTTCATCGCCGTGCAGTTTCTTTTTCACGCTCTGCTTCACGCTGCTCCTGATGGGCGTGATCATGACGCTGATGTTTTTGAGCTGCTCACGGGACAACGATCGCTACATTATGCTGCTGCTGACGAACGGGACGGTGCTGCTGCTCGCTGCCCTGTGCGGTCTGATAGCGGTGGCCACGTTCGGCTGCTACGGCGATAGCCGCGACTGGATGCCGAACTGGGAGCACAACGATATGGGCTGGTCGTTCGCGCTGGGCGTCGTCGGCACTTTCGCCCTGTTCCCGGCAGGCGTCCTGTTCATTGTCGAAGCGCGCCGGGCCACGTACCGGAGGCTGAACAACATTGCCAACACGGAGATGGCCGCTGCGTACACGATGGACGAGCGGGAAGTATCGCGGTGGACATACCGATATTTTAGGGCGTTCGCAA ] [+] EMBL BX618766 [ TCACCGATGGTACGACTATCCGTTCAATGGCTGCATGTGGATATTCGAGGAGGAGTACTACATCATCCACGACTACATACTGCCCGGGTTCTTCATCGCCGTGCAG TTCTTTTTCACGCTCTGCTTCACGCTGCTACTGATGGGCGTGATCATGACGCTGATGTTCTTGAGCTGCTCCCGGGACAACGATCGCTACATTATGCTGCTGCTGACGAACGGGACGTTGCTGCTGCTCGCTGCCCTGTGCGGGCTGATAGCGGTGGCCACGTTCGGCTGCTATGGCGATAGCCGCGACTGGATGCCGAACTGGGAGCACAACGATATGGGCTGGTCGTTCGCGCTGGGCGTCGTCGGCACGTTCGCCCTGTTCCCGGCAGGCGTCCTGTTCATCGTCGAAGCGCGCCGGGCCACGTACCGGAGGCTGAATAGCATTGCCAACACGGAGATGGCCGCTGCGTACACGATGGACGAGC GGAAGTATCGCGGTGGACATACCGATA TTTAGGGCGTTCGCAACCAGGCCAAACATTCCACGTTCCACGACCGGTCGGAGAGAGTCCTCTGTTCAAGAAGATGCTCTTTCCCCCCCGTGAACGTATAACAATGCCTTGCTAGAATAGATTTAAGAACGTTTTTTTACATCCACAACAATTGACAGCCGTTTT] consensusID : consensus_7053#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence [CAAGAATCGCCACGAGGTGGATTTACGGCGTTCGCCTTTTTGCTTTATTCTGATCGCTTTCTGCTCTCCCTACTGGCTACAAACCGATGGCGAACTGGAGCATCCAAAGTTTACCAATTTAGGACTTTGGGAGCTGTGCTTGCGCAACTTCCAGGACATTCACCGATGGTACGACTATCCGTTCAATGGCTGCATGTGGATATTCGAGGAGGAGTACTACATCATCCACGACTACATACTGCCCGGGTTCTTCATCGCGCGTGCAGGTTCTTTTTCACGCTCTGCTTCACGCTGCTACTGATGGGCGTGATCATGACGCTGATGTNCTTGAGGGC] [+] EMBL BX469140 [CAAGAATCGCCACGAGGTGGATTTACGGCGTTCGCCTTTTTGCTTTATTCTGATCGCTTTCTGCTCTCCCTACTGGCTACAAACCGATGGCGAACTGGAGCATCCAAAGTTTACCAATTTAGGACTTTGGGAGCTGTGCTTGCGCAACTTCCAGGACATTCACCGATGGTACGACTATCCGTTCAATGGCTGCATGTGGATATTCGAGGAGGAGTACTACATCATCCACGACTACATACTGCCCGGGTTCTTCATCGCGCGTGCAGGTTCTTTTTCACGCTCTGCTTCACGCTGCTACTGATGGGCGTGATCATGACGCTGATGTNCTTGAGGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7053#0 CCGCGGACGCGTGGGCGGACGCGTGGGCGCAAGCACAAGAACGGGAAAGTTTGCGGTCGG 60 consensus_7053#1 -----------------------------------CAAGAATCGCCACG-----AGGTGG 20 ****** * * * * ** consensus_7053#0 ATTTACGGCGTTCGCCTTTTTG-TTTATTCTGATCGCTTTCTGCTCTCCCTACTGGCTAC 119 consensus_7053#1 ATTTACGGCGTTCGCCTTTTTGCTTTATTCTGATCGCTTTCTGCTCTCCCTACTGGCTAC 80 ********************** ************************************* consensus_7053#0 AAACCGATGGCGAACTGGAGCATCCAAAGTTTACCAATTTAGGACTTTGGGAGCTGTGCT 179 consensus_7053#1 AAACCGATGGCGAACTGGAGCATCCAAAGTTTACCAATTTAGGACTTTGGGAGCTGTGCT 140 ************************************************************ consensus_7053#0 TGCGCAACTTCCAGGACATTCACCGATGGTACGACTATCCGTTCAATGGCTGCATGTGGA 239 consensus_7053#1 TGCGCAACTTCCAGGACATTCACCGATGGTACGACTATCCGTTCAATGGCTGCATGTGGA 200 ************************************************************ consensus_7053#0 TATTCGAGGAGGAGTACTACATCATCCACGACTACATACTGCCCGGGTTCTTCATCGC-C 298 consensus_7053#1 TATTCGAGGAGGAGTACTACATCATCCACGACTACATACTGCCCGGGTTCTTCATCGCGC 260 ********************************************************** * consensus_7053#0 GTGCAG-TTCTTTTTCACGCTCTGCTTCACGCTGCTACTGATGGGCGTGATCATGACGCT 357 consensus_7053#1 GTGCAGGTTCTTTTTCACGCTCTGCTTCACGCTGCTACTGATGGGCGTGATCATGACGCT 320 ****** ***************************************************** consensus_7053#0 GATGTTCTTGAGCTGCTCCCGGGACAACGATCGCTACATTATGCTGCTGCTGACGAACGG 417 consensus_7053#1 GATGTNCTTGAGG-GC-------------------------------------------- 335 ***** ****** ** consensus_7053#0 GACGGTGCTGCTGCTCGCTGCCCTGTGCGGGCTGATAGCGGTGGCCACGTTCGGCTGCTA 477 consensus_7053#1 ------------------------------------------------------------ consensus_7053#0 TGGCGATAGCCGCGACTGGATGCCGAACTGGGAGCACAACGATATGGGCTGGTCGTTCGC 537 consensus_7053#1 ------------------------------------------------------------ consensus_7053#0 GCTGGGCGTCGTCGGCACGTTCGCCCTGTTCCCGGCAGGCGTCCTGTTCATCGTCGAAGC 597 consensus_7053#1 ------------------------------------------------------------ consensus_7053#0 GCGCCGGGCCACGTACCGGAGGCTGAATAGCATTGCCAACACGGAGATGGCCGCTGCGTA 657 consensus_7053#1 ------------------------------------------------------------ consensus_7053#0 CACGATGGACGAGCGGGAAGTATCGCGGTGGACATACCGATATTTTAGGGCGTTCGCAAC 717 consensus_7053#1 ------------------------------------------------------------ consensus_7053#0 CAGGCCAAACATTCCACGTTCCACGACCGGTCGGAGAGAGTCCTCTGTTCAAGAAGATGC 777 consensus_7053#1 ------------------------------------------------------------ consensus_7053#0 TCTTTCCCCCCCGTGAACGTATAACAATGCCTTGCTAGAATAGATTTAAGAACGTTTTTT 837 consensus_7053#1 ------------------------------------------------------------ consensus_7053#0 TACATCCACAACAATTGACAGCCGTTTT 865 consensus_7053#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||