These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7054#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1102 fasta sequence [TGCTCTACACACTAAGGCCATTTTAAGATGGAAATAAAATCCTACTTACAACACAATATTGTACCTAAACAGAATGAAAAACATAACCTCTTTCCTAAACGACATTTCATAAATTCTACAGTAAACGCCTAACACATCGTAAACGTGCACTTTATGCACAGTTACGTTTTTCCTCTGCTATTTTTAAACGCACAAAC-AAAAAAACATAAATGTTTCGTTTTACACGTTTACATTACATCCCGAAAGGCCACAGAGAAACAAACAAAACGAATCCAATCAAATGTACACGGAACGCCCATGCGATCTCAGCCATCGCAAAATTACCTATTGTTCGTTTGTTTGTTTGATTTGTTTCATACCGACTTTTTCTTACTTAAAAAAATAAGAACCGCTCTTAGCAAAAACGAAGAGCGAAAAGAACTCTTAACGTTACAACGAAATAGAATTTGTCCCTACTAACGTGTGAGTTTGTTTTTCCTTCTCTCTCTTTCACGCTAACTATGTACAAATGAACACGCACACGCACGCACGCAAACACACTCCGGAAAGAAAGGGTTTTCTCCAAAATGAGAAAACATTCACTAGGAAGAAAGGCAATAGAAAGAGCGGTAGGGGAATGGGGAAACGATTCCCCATGTATACGATTTGTTAATAGTGTGTGTGTGCCTATGATTTAACAATTGCTTACCGTGAACGTGTGTGTGTGTTTCTGTTTTTTTAGCCTTTCCTGATAAAATCGTCCTTTCCTCAACTACATTTACATGCGCTGCAGGTGGAAACCCATCTCCATTCAGTCAAAGCCGAACCTAAACGTTATGTCATTTTCGGTGAAGAAAATTGTAACGCGAAGGCGCTGCTACTTTGATGCACATAAGAATGTCCCTACAGCTTCCCTACGACTACCACTACTAGCAGTAACACTAACACTATCCTGAAGGGTTCTACACACTGCTTAACCGTTAAATTATGGCAAATACAAAAAAAAACACAGAGAGTCCGCCGATTGTGTTGTGAAGGAAAAAGAGCATGATTACCATGGTGATGTGCGCCTCAGCCTCAGCCACACCGATGAAGAGGACACAACAGATATTGTATTTACCGG] [+] EMBL CNS08ICB [TGCTCTACACACTAAGGCCATTTTAAGATGGAAATAAAATCCTACTTACAACACAATATTGTACCTAAACAGAATGAAAAACATAACCTCTTTCCTAAACGACATTTCATAAATTCTACAGTAAACGCCTAACACATCGTAAACGTGCACTTTATGCACAGTTACGTTTTTCCTCTGCTATTTTTAAACGCACAAAC AAAAAAACATAAATGTTTCGTTTTACACGTTTACATTACATCCCGAAAGGCCACAGAGAAACAAACAAAACGAATCCAATCAAATGTACACGGAACGCCCATGCGATCTCAGCCATCGCAAAATTACCTATTGTTCGTTTGTTTGTTTGATTTGTTTCATACCGACTTTTTCTTACTTAAAAAAATAAGAACCGCTCTTAGCAAAAACGAAGAGCGAAAAGAACTCTTAACGTTACAACGAAATAGAATTTGTCCCTACTAACGTGTGAGTTTGTTTTTCCTTCTCTCTCTTTCACGCTAACTATGTACAAATGAACACGCACACGCACGCACGCAAACACACTCCGGAAAGAAAGGGTTTTCTCCAAAATGAGAAAACATTCACTAGGAAGAAAGGCAATAGAAAGAGCGGTAGGGGAATGGGGAAACGATTCCCCATGTATACGATTTGTTAATAGTGTGTGTTTTCCTATTATTTAACAATTGCTTACCGTGAACGTGTGTTTTTTTTTCTGTTTTTTTAGCCTTTCCTGATAAAATCGTCCTTTCCTCAACTACATTTACATGCGCTGCAGGTGGAAACCCATCTCCATTCAGTCAAAGCCGAACCTAAACGTTATGTCAT ] [-] EMBL CNS08ICA [ ACTTTATGCACAGTTACGTTTTTCCTCTGCTATTTTTAAACGCACAAACAAAAAAAACATAAATGTTTCGTTTTACACGTTTACATTACATCCCGAAAGGCCACAGAGAAACAAACAAAACGAATCCAATCAAATGTACACGGAACGCCCATGCGATCTCAGCCATCGCAAAATTACCTATTGTTCGTTTGTTTGTTTGATTTGTTTCATACCGACTTTTTCTTACTTAAAAAAATAAGAACCGCTCTTAGCAAAAACGAAGAGCGAAAAGAACTCTTAACGTTACAACGAAATAGAATTTGTCCCTACTAACGTGTGAGTGTGTTTTTCCTTCTCTCTCTTTCACGCTAACTATGTACAAATGAACACGCACACGCACGCACGCAAACACACTCCGGAAAGAAAGGGTTTTCTCCAAAATGAGAAAACATTCACTAGGAAGAAAGGCAATAGAAAGAGCGGTAGGGGAATGGGGAAACGATTCCCCATGTATACGATTTGTTAATAGTGTGTGTGTGCCTATGATTTAACAATTGCTTACCGTGAACGTGTGTGTGTGTTTCTGTTTTTTTAGCCTTTCCTGATAAAATCGTCCTTTCCTCAACTACATTTACATGCGCTGCAGGTGGAAACCCATCTCCATTCAGTCAAAGCCGAACCTAAACGTTATGTCATTTTCGGTGAAGAAAATTGTAACGCGAAGGCGCTGCTACTTTGATGCACATAAGAATGTCCCTACAGCTTCCCTACGACTACCACTACTAGCAGTAACACTAACACTATCCTGAAGGGTTCTACACACTGCTTAACCGTTAAAT ] [-] EMBL BM640431 [ ATGAACACGCACACGCACGCACGCAAACACACTCGGGAAAGAAAGGGTTTTCTCCAAAATGAGAAAACATTCACTAGGAAGAAAGGCAATAGAAAGAGCGGTAGGGGAATGGGGAAACGATTCCCCATGTATACGATTTGTTAATAGTGTGTGTGTGCCTATGATTTAACAATTGCTTACCGTGAACGTGTGTGTGTGTTTCTGTTTTTTTAGCCTTTCCTGATAAAATCGTCCTTTCCTCAACTACATTTACATGCGCTGCAGGTGGAAACCCATCTCCATTCAGTCAAAGCCGAACCTAAACGTTATGTCATTTTCGGTGAAGAAAATTGTAACGCGAAGGCGCTGCTACTTTGATGCACATAAGAATGTCCCTACAGCTTCCCTACGACTACCACTACTAGCAGTAACACTAACACTATCCTGAAGGGTTCTACACACTGCTTAACCGTTAAATTATGGCAAATACAAAAAAAAACACAGAGAGTCCGCCGATTGTGTTGTGAAGGAAAAAGAGCATGATTACCATGGTGATGTGCGCCTCAGCCTCAGCCACACCGATGAAGAGGACACAACAGATATTGTATTTACCGG] consensusID : consensus_7054#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 682 fasta sequence [CATAAATTCTACAGTAAACGCCTAACACATCGTAAACGTGCACTTTATACACAGTTACGTTTTTCCTCTACTATTTTTTATCGCACAAAGAAAAAAACATAAATGTTTCGTTTTACACGTTTACATTACATCCCGAAAGGCCACAGAG-AAACAAACAAAACGAATCCAATCAAATGTACACGGAACCGCCATGCGATCTTAGCCATCGCAAAATTACCTATTGTTAGTTTGTTTGTTTGTTTGTTTGTTTTGTTAACCGACTTTTTCTTACTTAAAAAATAAGAACCGCTCTTAGCAAAAACGAAGAGCGAAAAGAACTCTTAACGTTACAACGAAATAGAATTTGTCCCTACTAGCGTGTGTTTTTTCTCCCTTTCACACTAACTATGTACAAATGAACACGCACACGCACGCACGCAAACACACTCCGGAAAGAAAGGGTTTTCTCCAAAATGAGAAAACATTCACTAAGAAGAAAGGCAATAGAAAGAAGAGGATAGGAATGGGGAAACGATTCCCCACTTACACGGTTCGTGTTAATAGTGTGTGTGTGCCTATGATTTAACAATTGCTTACCGTGAACGTGTGTGTGTGTGTGTTTCTGTTGTTTTTAGCCTTTTCTGATAAAATCGTCCTTTCCTCAACTAAATTTACATGCGCTGCAGGTGGAAACCCGTCTCCA] [-] EMBL BX608563 [CATAAATTCTACAGTAAACGCCTAACACATCGTAAACGTGCACTTTATACACAGTTACGTTTTTCCTCTACTATTTTTTATCGCACAAAGAAAAAAACATAAATGTTTCGTTTTACACGTTTACATTACATCCCGAAAGGCCACAGAG AAACAAACAAAACGAATCCAATCAAATGTACACGGAACCGCCATGCGATCTTAGCCATCGCAAAATTACCTATTGTTCGTTTGTTTGTTTGTTTGTTTGTTTTGTTAACCGACTTTTTCTTACTTAAAAAATAAGAACCGCTCTTAGCAAAAACGAAGAGCGAAAAGAACTCTTAACGTTACAACGAAATAGAATTTGTCCCTACTAGCGTGTGTTTTTTCTCCCTTTCACACTAACTATGTACAAATGAACACGCACACGCACGCACGCAAACACACTCCGGAAAGAAAGGGTTTTCTCCAAAATGAGAAAACATTCACTAAGAAGAAAGGCAATAGAAAGAAGAGGATAGGAATGGGGAAACGATTCCCCACTTACACGGTTCGTGTTAATAGTGTGTGTGTGCCTATGATTTAACAATTGCTTACCGTGAACGTGTGTGTGTGTGTGTTTCTGTTGTTTTTAGCCTTTTCTGATAAAATCGTCCTTTCCTCAACTAAATTTACATGCGCTGCAGGTGGAAACCCGTCTCCA] [-] EMBL AGA280915 [ TAAACGTGCACTTTATACACAGATACGTTTTTCCTATACTATTTTTTATCGCCCAAAGAAAAAAACGTAAATGTTTCGTTTTACACGTTTACCTTACATCCCGAAAGGCCACAGAGAAAACAAACAAAACGAATCCAATCAAATGTACACGGAACCGCCATGCGATCTTAGCCATCGCAAAATTACCTATTGTTAGTTTGTTTGTTTGTTTGTTTGTTTTGTTAACCGACTTTTTCTTACTTAAAAAA ] [+] EMBL AGA282544 [ CTTTATACACAGTTACGTTTTTCCTCTACTATTTTTTATCGCACAAAGAAAAAAACATAAATGTTTCGTTTTACACGTTTACATTACATCCCGAAAGGCCACAGAG AAACAAACAAAACGAATCCAATCAAATGTACACGGAACCGCCATGCGATCTTAGCCATCGCAAAATTACCTATTGTTAGTTTGTTTGTTTGTTTGTTTGTTTTGTTAACCGACTTTTTCTTACTTAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7054#0 TGCTCTACACACTAAGGCCATTTTAAGATGGAAATAAAATCCTACTTACAACACAATATT 60 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 GTACCTAAACAGAATGAAAAACATAACCTCTTTCCTAAACGACATTTCATAAATTCTACA 120 consensus_7054#1 -----------------------------------------------CATAAATTCTACA 13 ************* consensus_7054#0 GTAAACGCCTAACACATCGTAAACGTGCACTTTATGCACAGTTACGTTTTTCCTCTGCTA 180 consensus_7054#1 GTAAACGCCTAACACATCGTAAACGTGCACTTTATACACAGTTACGTTTTTCCTCTACTA 73 *********************************** ******************** *** consensus_7054#0 TTTTTAAACGCACAAACAAAAAAACATAAATGTTTCGTTTTACACGTTTACATTACATCC 240 consensus_7054#1 TTTTTTATCGCACAAAGAAAAAAACATAAATGTTTCGTTTTACACGTTTACATTACATCC 133 ***** * ******** ******************************************* consensus_7054#0 CGAAAGGCCACAGAGAAACAAACAAAACGAATCCAATCAAATGTACACGGAACGCCCATG 300 consensus_7054#1 CGAAAGGCCACAGAGAAACAAACAAAACGAATCCAATCAAATGTACACGGAACCGCCATG 193 ***************************************************** ***** consensus_7054#0 CGATCTCAGCCATCGCAAAATTACCTATTGTTCGTTTGTTTGTTTG---ATTTGTTTCAT 357 consensus_7054#1 CGATCTTAGCCATCGCAAAATTACCTATTGTTAGTTTGTTTGTTTGTTTGTTTGTTTTGT 253 ****** ************************* ************* ******* * consensus_7054#0 --ACCGACTTTTTCTTACTTAAAAAAATAAGAACCGCTCTTAGCAAAAACGAAGAGCGAA 415 consensus_7054#1 TAACCGACTTTTTCTTACTTAAAAAA-TAAGAACCGCTCTTAGCAAAAACGAAGAGCGAA 312 ************************ ********************************* consensus_7054#0 AAGAACTCTTAACGTTACAACGAAATAGAATTTGTCCCTACTAACGTGTGAGTTTGTTTT 475 consensus_7054#1 AAGAACTCTTAACGTTACAACGAAATAGAATTTGTCCCTACTAGCGTGTG---------- 362 ******************************************* ****** consensus_7054#0 TCCTTCTCTCTCTTTCACGCTAACTATGTACAAATGAACACGCACACGCACGCACGCAAA 535 consensus_7054#1 -TTTTTTCTCCCTTTCACACTAACTATGTACAAATGAACACGCACACGCACGCACGCAAA 421 ** **** ******* ***************************************** consensus_7054#0 CACACTCCGGAAAGAAAGGGTTTTCTCCAAAATGAGAAAACATTCACTAGGAAGAAAGGC 595 consensus_7054#1 CACACTCCGGAAAGAAAGGGTTTTCTCCAAAATGAGAAAACATTCACTAAGAAGAAAGGC 481 ************************************************* ********** consensus_7054#0 AATAGAAAGAGCGGTAGGGGAATGGGGAAACGATTCCCCATGTATACGATT--TGTTAAT 653 consensus_7054#1 AATAGAAAGAAGAGGATAGGAATGGGGAAACGATTCCCCACTTACACGGTTCGTGTTAAT 541 ********** * * ********************** ** *** ** ******* consensus_7054#0 AGTGTGTGTGTGCCTATGATTTAACAATTGCTTACCGTGAACGTGTGTGTGTGT----TT 709 consensus_7054#1 AGTGTGTGTGTGCCTATGATTTAACAATTGCTTACCGTGAACGTGTGTGTGTGTGTGTTT 601 ****************************************************** ** consensus_7054#0 CTGTT-TTTTTAGCCTTTCCTGATAAAATCGTCCTTTCCTCAACTACATTTACATGCGCT 768 consensus_7054#1 CTGTTGTTTTTAGCCTTTTCTGATAAAATCGTCCTTTCCTCAACTAAATTTACATGCGCT 661 ***** ************ *************************** ************* consensus_7054#0 GCAGGTGGAAACCCATCTCCATTCAGTCAAAGCCGAACCTAAACGTTATGTCATTTTCGG 828 consensus_7054#1 GCAGGTGGAAACCCGTCTCCA--------------------------------------- 682 ************** ****** consensus_7054#0 TGAAGAAAATTGTAACGCGAAGGCGCTGCTACTTTGATGCACATAAGAATGTCCCTACAG 888 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 CTTCCCTACGACTACCACTACTAGCAGTAACACTAACACTATCCTGAAGGGTTCTACACA 948 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 CTGCTTAACCGTTAAATTATGGCAAATACAAAAAAAAACACAGAGAGTCCGCCGATTGTG 1008 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 TTGTGAAGGAAAAAGAGCATGATTACCATGGTGATGTGCGCCTCAGCCTCAGCCACACCG 1068 consensus_7054#1 ------------------------------------------------------------ consensus_7054#0 ATGAAGAGGACACAACAGATATTGTATTTACCGG 1102 consensus_7054#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||