These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7058#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1620 fasta sequence [CAAATTTGAGCACAATGAGCACCGTGCCACCGTCGCGCAGGAAAAAAGTTGTCGCATTTGTTCCGTTCCTTTGCAGCCCTGGTGAAAAGTAAGGGGAAAAGAAAGCACAGTTCCGTAATAGGTGCATCCCGCACCGACTGGTACGAGTTTCAAAAAAGGAAGCACCCGCTAGCGGAACGGCACAAGACAACACAAGAAGGAAACCCGCGAGCGAAAGAAAGAAAACAAACGTTATATGGTTTACTAAAACAGCGACGACAGAGGGGAGGTACGATAAAAAAAAAAACAGCAGCAACACAACAAAACCGCCAACAAAATGAGCTGGTTACGATCGAGCCCGTTGCGGCAAAGTTTCAGCAAAAGCGGCAACAACAGCAACAGCAACGG-CG-GTGGCAGCGCGAATGACCGTTCGCGTTCCGGTGCCGGGGGCGGCGGGCTGTCGTCGGTGATTCGCCCGTTCGATGCAACCGAGTGCGATCCGAA-GCCTGCTACGACAGCTTCTGCATCCACTGGCAGCAGGCGTACGAGATCATACAGCGGTCCGAGAACTATCGCAGCCAGTCGCACGATGACGTGCTGGGCGTGGTGACACATCTAGACCACATGGTAACGCTGCTGCTGGTGGAGTTGCACCACTGCAACAAGCTCAGCCTGCCGGGACAGCCCACGCCGCCGGCACCCTGTCTGGAGCATCTGCTGAGCGAAAACCTACTCGACAAGCTGTACGAGTGGGGCATCAAGACGGGCCGATACGCAAACGCATCCCGATTGGAGCAGCTCAAGCTGTACGAGCAATTGGTGAGTCACTCGCGCCATCAGCTGCTGGTGCATGAACCGTTTCTTCGGCCGCTGCTGAAGCTGCTGGCCTCGAGCCAGAACGAAATCTATCCGCCGGACGTCGAGAAGCGGCTGGTGATACTGCTCAATCAGCTGTGCGTGGTGCTGATGCAGAACGTGCACCTGCTCGATCTGTTCTTCTTCTCCACCACGCAGACGCAGCAAAGCCACCACGCTAGCAACGGTGGGCACACGAACTTCATCATCTTTTCGCTGCTGATACCGGACGTCCACCGGGAGGGGTCGCTTCGGTCATCAGGCACGGGAACCCCCTGCTGGCCTGCATGGCGTGTCGCAGAAGAACTCGAACGTCGGCACGTACATTGCGACGTACTCGTCCATCTGTCCGGTGCTGGTGACCGGGCTCGGTGGGCTGTATTCGCGGCTGCCCAACCAGATCGAAATCAAAACCGTCGACTGGTATCGGATCACCACGGACGACGTGACGGAGCTGCCCGAGTGACGCTGTTCATGAACTCGCTCGAGTTTTGCAACGCAGTGGTGCAGGTTGCGCATACGATGATCCGCCAGCAGCTGCTCGATTTTCTCTACCAGGGCTTCCTGGTGCCCGTTCTAGGGCCGGCAATATTGCAGACGAACGTTGAATCGCAGGTGTCCGCGATGGCGTACTTCGACCTGATCGTACGGTCGATCACCGAGCCGGGGCTAATACAGATCGTGATCCGGTTTCTGCTGGACGAGGAAAAGTTCGACGGGCAGCGCATACTGGACGTGCTGGTTGAGCGGTTAAAACAGTATACGACGTCGCGGCTTATAAAAAAA] [+] EMBL CNS08Q51 [CAAATTTGAGCACAATGAGCACCGTGCCACCGTCGCGCAGGAAAAAAGTTGTCGCATTTGTTCCGTTCCTTTGCAGCCCTGGTGAAAAGTAAGGGGAAAAGAAAGCACAGTTCCGTAATAGGTGCATCCCGCACCGACTGGTACGAGTTTCAAAAAAGGAAGCACCCGCTAGCGGAACGGCACAAGACAACACAAGAAGGAAACCCGCGAGCGAAAGAAAGAAAACAAACGTTATATGGTTTACTAAAACAGCGACGACAGAGGGGAGGTACGATAAAAAAAAAAACAGCAGCAACACAACAAAACCGCCAACAAAATGAGCTGGTTACGATCGAGCCCGTTGCGGCAAAGTTTCAGCAAAAGCGGCAACAACAGCAACAGCAACGG CG GTGGCAGCGCGAATGACCGTTCGCGTTCCGGTGCCGGGGGCGGCGGGCTGTCGTCGGTGATTCGCCCGTTCGATGCAACCGAGTGCGATCCGAA GCCTGCTACGACAGCTTCTGCATCCACTGGCAGCAGGCGTACGAGATCATACAGCGGTCCGAGAACTATCGCAGCCAGTCGCACGATGACGTGCTGGGCGTGGTGACACATCTAGACCACATGGTAACGCTGCTGCTGGTGGAGTTGCACCACTGCAACAAGCTCAGCCTGCCGGGACAGCCCACGCCGCCGGCACCCTGTCTGGAGCATCTGCTGAGCGAAAACCTACTCGACAAGCTGTACGAGTGGGGCATCAAGACGGGCCGATACGCAAACGCATCCCGATTGGAGCAGCTCAAGCTGTACGAGCAATTGGTGAGTCACTCGCGCCATCAGCTGCTGGTGCATGAACCGTTTCTTCGGCCGCTGCTGAAGCTGCTGGCCTCGAGC ] [+] EMBL BM617976 [ ccgCGGACGCGTGG GCGCGAATGACCGTTCGCGTTCCGGTGCCGGGGGCGGCGGGCTGTCGTCGGTGATTCGCCCGTTCGATGCAACCGAGTGCGATCCGAAGGCCTGCTACGACAGTTTCTGCATCCACTGGCAGCAGGCGTACGAGATCATACAGCGGTCCGAGAACTATCGCAGCCAGTCGCACGATGACGTGCTGGGCGTGGTGACACATCTAGACCACATGGTAACGCTGCTGCTGGTGGAGTTGCACCACTGCAACAAGCTCAGCCTGCCGGGACAGCCCACGCCGCCGGCACCCTGTCTGGAGCATCTGCTGAGCGAAAACCTACTCGACAAGCTGTACGAGTGGGGCATCAAGACGGGCCGATACGCAAACGCAGTCCGATTGGAGCAGCTCAAGCTGTACGAGCAATTGGTGAGTCACTCGCGCCATCAGCTGCTGGTGCATGAACCGTTTCTCCGGCCGCTGCTGAAGCTGCTGGCCTCGAGCCAGAACGAAATCTATCCGCCGGACGTCGAGAAGCGGCTGGTGATACTGCTCAATCAGCTGTGCGTGGTGCTGATGCAGAACGTGCACCTGCTCGATCTGTTCTTCTTCTCCACCACGCAGACGCAGCAAAGCCACCACGCTAGCAACGGTGGGCACACGAACTTCATCATCTTTTCGCTGCTGATACCGGACGTCCACCGGGAGGGGTCGCTTCGGTCATCAGGCACGGGAACCCCCTGCTGGC ] [-] EMBL CNS08Q52 [ GCCAGAACGAAATCTATCCACCGGACGTCGAGAAGCGGCTGGTGATACTGCTCAATCAGCTGTGCGTGGTGCTGATGCAGAACGTGCACCTGCTCGATCTGTTCTTCTTCTCCACCACGCAGACGCAGCAAAGCCACCACGCTAGCAACGGTGGCCACACGAACTTCATCATCTTTTCGCTGCTGGTACCGTACGTCCACCGGGAGGGGTCGC TCGGTCATAAGGCACGGG ACGCCCTGCTGCTCTGCATGGCGTGTCGCAGAAGAACTCGAACGTCGGCACGTACATTGCGACGTACTCGTCCATCTGTCCGGTGCTGGTGACCGGGCTCGGTGGGCTGTATTCGCGGCTGCCCAACCAGATCGAAATCAAAACCGTCGACTGGTATCGGATCACCACGGACGACGTGACGGAGCTGCCCGAGTGACGCTGTTCATGAACTCGCTCGAGTTTTGCAACGCAGTGGTGCAGGTTGCGCATACGATGATCCGCCAGCAGCTGCTCGATTTTCTCTACCAGGGCTTCCTGGTGCCCGTTCTAGGGCCGGCAATATTGCAGACGAACGTTGAATCGCAGGTGTCCGCGATGGCGTACTTCGACCTGATCGTACGGTCGATCACCGAGCCGGGGCTAATACAGATCGTGATCCGGTTTCTGCTGGACGAGGAAAAGTTCGACGGGCAGCGCATACTGGACGTGCTGGTTGAGCGGTTAAAACAGTATACGACGTCGCGGCTTATAAAAAAA] consensusID : consensus_7058#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 702 fasta sequence [CCGCCCACGCGTCCGTGAGCAGCAATGAGCCACCGTGCCACCGTCGTGCAGGAAAAAAGTCGTCGCATTTGTTCCGTTCCTTTGCAGCCCTGGTGAAAAGTAAGGGGAAAAGAAAGCACAGTTCCGTAATAGGTGCATCCCGCACCGACTGGTACGAGACCGTTTTCCAAGTGTAAATCTAATGTCTCATCCGTGTGCTGCTAACGGTGGTGGGGTTTGTTATTAAACGATTCCCCCTCCTTCGGCGCACTCCGACTCCGGATGGCTGCCGGATGATGGATTAGAGAGTGTTCGGTTCTTGCGATTTGTGTGCCACCTGTGTGCCGTTGTGTGTAACATGGCACTGTCCATATACGATGCGAATCCGATTGTACAGCGCAGTTGAGTGTGAGTGAGTAAGTTCAAAAATTCGAACGGGACCCGAGCCGGAAACGGCAAACCAACCACCTTGTCCGCGCACCATCACCACCGTTTGAAGAAAAAAAATACTGTGTGGTCGGACGATTCGAGAAACATCTACCCCTAAGTTTCAAAAAAAAAAATACTGTGTGGTCGGACGATTCGAGAAACATCTACCCCTAAGTTTCAAAAAAGGAAGCACCCGCTAGCGGAACGGCACAAGACAACACAAGAAGGAAACCCGCGAGCGAAAGAAAGAAATCAAACGTTATATGGTTTACTAAAACAGCGACGACAGAGGAG] [+] EMBL BM594642 [CCGCCCACGCGTCCGTGAGCAGCAATGAGCCACCGTGCCACCGTCGTGCAGGAAAAAAGTCGTCGCATTTGTTCCGTTCCTTTGCAGCCCTGGTGAAAAGTAAGGGGAAAAGAAAGCACAGTTCCGTAATAGGTGCATCCCGCACCGACTGGTACGAGACCGTTTTCCAAGTGTAAATCTAATGTC ] [+] EMBL BX628927 [ GAGCAGCAATGAGCCACCGTGCCACCGTCGTGCAGGAAAAAAGTCGTCGCATTTGTTCCGTTCCTTTGCAGCCCTGGTGAAAAGTAAGGGGAAAAGAAAGCACAGTTCCGTAATAGGTGCATCCCGCACCGACTGGTACGAGACCGTTTTCCAAGTGTAAATCTAATGTCTCATCCGTGTGCTGCTAACGGTGGTGGGGTTTGTTATTAAACGATTCCCCCTCCTTCGGCGCACTCCGACTCCGGATGGCTGCCGGATGATGGATTAGAGAGTGTTCGGTTCTTGCGATTTGTGTGCCACCTGTGTGCCGTTGTGTGTAACATGGCACTGTCCATATACGATGCGAATCCGATTGTACAGCGCAGTTGAGTGTGAGTGAGTAAGTTCAAAAATTCGAACGGGACCCGAGCCGGAAACGGCAAACCAACCACCTTGTCCGCGCACCATCACCACCGTTTGAAG ] [+] EMBL BX627118 [ TCCTTTGCAGCCCTGGTGAAAAGTAAGGGGAAAAGAAAGCACAGTTCCGTAATAGGTGCATCCCGCACCGACTGGTACGAGACCGTTTTCCAAGTGTAAATCTAATGTCTCATCCGTGTGCTGCTAACGGTGGTGGGGTTTGTTATTAAACGATTCCCCCTCCTTCGGCGCACTCCGACTCCGGATGGCTGCCGGATGATGGATTAGAGAGTGTTCGGTTCTTGCGATTTGTGTGCCACCTGTGTGCCGTTGTGTGTAACATGGCACTGTCCATATACGATGCGAATCCGATTGTACAGCGCAGTTGAGTGTGAGTGAGTAAGTTCAAAAATTCGAACGGGACCCGAGCCGGAAACGGCAAACCAACCACCTTGTCCGCGCACCATCACCACCGTTTGAAGAAAAAAAATACTGTGTGGTCGGACGATTCGAGAAACATCTACCCCTAAGTTTCAAAAAAAAAAATACTGTGTGGTCGGACGATTCGAGAAACATCTACCCCTAAGTTTCAAAAAAGGAAGCACCCGCTAGCGGAACGGCACAAGACAACACAAGAAGGAAACCCGCGAGCGAAAGAAAGAAATCAAACGTTATATGGTTTACTAAAACAGCGACGACAGAGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7058#0 ---------CAAATTTGAGCA-CAATGAGC-ACCGTGCCACCGTCGCGCAGGAAAAAAGT 49 consensus_7058#1 CCGCCCACGCGTCCGTGAGCAGCAATGAGCCACCGTGCCACCGTCGTGCAGGAAAAAAGT 60 * ****** ******** *************** ************* consensus_7058#0 TGTCGCATTTGTTCCGTTCCTTTGCAGCCCTGGTGAAAAGTAAGGGGAAAAGAAAGCACA 109 consensus_7058#1 CGTCGCATTTGTTCCGTTCCTTTGCAGCCCTGGTGAAAAGTAAGGGGAAAAGAAAGCACA 120 *********************************************************** consensus_7058#0 GTTCCGTAATAGGTGCATCCCGCACCGACTGGTACGAG----TTTCAAAAAAGGAAGCAC 165 consensus_7058#1 GTTCCGTAATAGGTGCATCCCGCACCGACTGGTACGAGACCGTTTTCCAAGTGTAA--AT 178 ************************************** *** ** * ** * consensus_7058#0 CCGCTAGCGGAACGGCACAAGACAACACAAGAAGGAAACCCGCGAGCGAAAGAAAGAAAA 225 consensus_7058#1 CTAATGTCTCATCCGTGTGCTGCTA-ACGGTGGTGGGGTTTGTTATTAAACGAT------ 231 * * * * * * * * ** * * * ** ** consensus_7058#0 CAAACGTTATATGGTTTACTAAAACAGCG-ACGACAGAGGGGAGGTACGATAAAAAAAAA 284 consensus_7058#1 TCCCCCTCCTTCGGCGCACTCCGACTCCGGATGGCTGCCGGATGATG-GATTAGAGAGTG 290 * * * ** *** ** ** * * * * ** * * *** * * * consensus_7058#0 AACAGCAGCAACACAACAAAACCGCCAACAAAATGA-GCTGGTTACGATCGAGCCCGTTG 343 consensus_7058#1 TTCGGTTCT--TGCGATTTGTGTGCCACCTGTGTGCCGTTGTGTGTAACATGGCACTGTC 348 * * * * **** * ** * ** * * ** * * consensus_7058#0 CGGCAAAGTTTCAGCAAAAGCGGCAACAACAGCAACAGCAACGGCGGTGGCAGCGCGAAT 403 consensus_7058#1 CATATACGATGCGAATCCGATTGTA-CAGCGCAGTTGAGTGTGAGTGAGTAAGTTCAAAA 407 * * * * * * * ** * * * * ** * ** consensus_7058#0 GACCGTTCGCGTTCCGGTGCCGGGGGCGGCGGGCTGTCGTCGGTGATTCGCCCGTTCGAT 463 consensus_7058#1 ATTCGAACGGGACCCGA-GCCGGAAACGGCAAACCAACCAC-----CTTGTCCGCGCACC 461 ** ** * *** ***** **** * * * * * *** * consensus_7058#0 GCAACCGAGTGCGATCCGAAGCCTGCTACGACAGCTTCTGCATCCACTGGCAGCAGGCGT 523 consensus_7058#1 ATCACC----ACCGTTTGAAG------AAAAAAAATACTGTGTGGTCGGACGATTCGAGA 511 *** * * **** * * * * *** * * * * * * consensus_7058#0 ACGAGATCATACAGCGGTCCGAGAACTATCGCAGCCAGTCGCACGATGACGTGCTGGGCG 583 consensus_7058#1 AACATCTACCCCTAAGTTTCAAAAAAAAAAATACTGTGTGGTCGGACGATTCGAGAAACA 571 * * * * * * * * ** * * ** * ** ** * * consensus_7058#0 TGGTGACACATCTAGACCACATGGTAACGCTGCTGCTGGTGGAGTTGCACCA--CTGCAA 641 consensus_7058#1 T--CTACCCCTAAGTTTCAAAAAAGGAAGCACCCGCTAGCGGAACGGCACAAGACAACAC 629 * ** * * ** * * ** * *** * *** **** * * ** consensus_7058#0 CAAGCTCAGCCTGCCGGGACAGCCCACGCCGCCGGCACCCTGTCTGGAGCATCTGCTGAG 701 consensus_7058#1 AAGAAGGAAACCCGCGAGCGAAAGAAAGAAATCAA-ACGTTATATGGTTTACTAAAACAG 688 * * * ** * * * * * ** * * *** * ** consensus_7058#0 CGAAAACCTACTCGACAAGCTGTACGAGTGGGGCATCAAGACGGGCCGATACGCAAACGC 761 consensus_7058#1 CGACGACAGAGGAG---------------------------------------------- 702 *** ** * * consensus_7058#0 ATCCCGATTGGAGCAGCTCAAGCTGTACGAGCAATTGGTGAGTCACTCGCGCCATCAGCT 821 consensus_7058#1 ------------------------------------------------------------ consensus_7058#0 GCTGGTGCATGAACCGTTTCTTCGGCCGCTGCTGAAGCTGCTGGCCTCGAGCCAGAACGA 881 consensus_7058#1 ------------------------------------------------------------ consensus_7058#0 AATCTATCCGCCGGACGTCGAGAAGCGGCTGGTGATACTGCTCAATCAGCTGTGCGTGGT 941 consensus_7058#1 ------------------------------------------------------------ consensus_7058#0 GCTGATGCAGAACGTGCACCTGCTCGATCTGTTCTTCTTCTCCACCACGCAGACGCAGCA 1001 consensus_7058#1 ------------------------------------------------------------ consensus_7058#0 AAGCCACCACGCTAGCAACGGTGGGCACACGAACTTCATCATCTTTTCGCTGCTGATACC 1061 consensus_7058#1 ------------------------------------------------------------ consensus_7058#0 GGACGTCCACCGGGAGGGGTCGCTTCGGTCATCAGGCACGGGAACCCCCTGCTGGCCTGC 1121 consensus_7058#1 ------------------------------------------------------------ consensus_7058#0 ATGGCGTGTCGCAGAAGAACTCGAACGTCGGCACGTACATTGCGACGTACTCGTCCATCT 1181 consensus_7058#1 ------------------------------------------------------------ consensus_7058#0 GTCCGGTGCTGGTGACCGGGCTCGGTGGGCTGTATTCGCGGCTGCCCAACCAGATCGAAA 1241 consensus_7058#1 ------------------------------------------------------------ consensus_7058#0 TCAAAACCGTCGACTGGTATCGGATCACCACGGACGACGTGACGGAGCTGCCCGAGTGAC 1301 consensus_7058#1 ------------------------------------------------------------ consensus_7058#0 GCTGTTCATGAACTCGCTCGAGTTTTGCAACGCAGTGGTGCAGGTTGCGCATACGATGAT 1361 consensus_7058#1 ------------------------------------------------------------ consensus_7058#0 CCGCCAGCAGCTGCTCGATTTTCTCTACCAGGGCTTCCTGGTGCCCGTTCTAGGGCCGGC 1421 consensus_7058#1 ------------------------------------------------------------ consensus_7058#0 AATATTGCAGACGAACGTTGAATCGCAGGTGTCCGCGATGGCGTACTTCGACCTGATCGT 1481 consensus_7058#1 ------------------------------------------------------------ consensus_7058#0 ACGGTCGATCACCGAGCCGGGGCTAATACAGATCGTGATCCGGTTTCTGCTGGACGAGGA 1541 consensus_7058#1 ------------------------------------------------------------ consensus_7058#0 AAAGTTCGACGGGCAGCGCATACTGGACGTGCTGGTTGAGCGGTTAAAACAGTATACGAC 1601 consensus_7058#1 ------------------------------------------------------------ consensus_7058#0 GTCGCGGCTTATAAAAAAA 1620 consensus_7058#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||