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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7063#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1013 fasta sequence
[GAGGCAGAATCCCGCACGAGTGTACTACTACTACTGCTACTCGTAA-TGTC-ATAGGCGAAAGGAAAGTTACTGTGTCGATGGGAAAAG-TTGCCGAAAAGTTGTCATTCCAGTACGCTGTGGTTGGCCAGTACGTACTCCACCATCGTCGCTGGTGTTGCTGCTGCTGTGTCGATGCCGTCGTCATCGTCGGACGCGCAGTGCCTTATTAAATCGTACCAAAACACTAAATCGATTCACCATGTCTGGCCGATCGCGGCAACCTAAAAGCATGCTAGAAATGCCAACCCGTGTAAAAACAAAAGCATAAC-CAAACACACTCCTCCGAGAGCTGTTCGCGTGAAGCCCATGAACTAGCAGCCGTGCTTTGGATGGAT---GTAGCCACCTACA-CCAAAGCGCTCGCTGTTCCTTCTCAAATGTT-CGACTCC-GTCCCT-GCTGTGCCATGGGGCAAGGGAATTCTTCGAGAAATATGAAGCGTCGGA-GCAACCGATTGAGAAGGAAGCG-AAACAAACGGTAAGGGATGCGGAGCTGT--TTTGCTCGGTAAACGTTGAA-GAAAGCTGC-TTCAACGTT--GGCCACCTA-GAAACGTGTGCCTACTTCGACGGTCTCTATGCAATGGTGTTTAAAATGCAACCAAACCCGTAAACCACTACCAACCTCGATAATACAAAACGATCTAGTATTTCTGTAAATCCCAACTACCCGAGCAAACGTAATCAAACACGTTCTGTGTTTAAATACCGTCGAAATCGTTCACACCTTGCATTCGCGGTCTTCTGTCCGTCGTCGTACAATACTTCCGTC-GTGAACAGATCAACAAATGCAAGAACCGCTTTCCCAATGGATTTCGTTGCCCGTCCGCTTCGCATTCACAAAGTTGCATTAATGTACCAAAATGCAACTGTCCGATAAAAAAATCCCCTACAAAAGAGGTCGCAGCGCCGCAACATAATAAGCACCTAGAGTTGCATTGAAAAAAAAGAAGAAAATATCAATTCAAACCACATGTGTTGCTCGTG]
[+] EMBL BX466501 [GAGGCAGAATCCCGCACGAGTGTACTACTACTACTGCTACTCGTAACTGTC ATAGGCGAAAGGAAAGTTACTGTGTCGATGGGAAAAG TTGCCGAAAAGTTGTCATTCCAGTACGCTGTGGTTGGCCAGTACGTACTCCACCATCGTCGCTGGTGTTGCTGCTGCTGTGTCGATGCCGTCGTCATCGTCGGACGCGCAGTGCCTTATTAAATCGTACCAAAACACTAAATCGATTCACCATGTCTGGCCGATCGCGGCAACCTAAAAGCATGCTAGATATGCCAAACCGTGTAAAAACAAAAGCATAAC CAAACACACTCCTCCGAGAGCTGTTCGCGTGAAGCCCATGAACTAGCAGCCGTGCTTTGGATGGAT GTAGCCACCTACAGCCAAAGCGCTCGCTGTTCCTTCTCAAATGTTACGACTCCGGTCCCTGGCTGTGCCATGGGGCAAGGGAATTCTTCGAGAAATATGATGCGTCGGAGGCAACCGATTGAGAAGGAAGCGAAAACAAACGGTAAGGGATGCGGAGCTGTGNTAGGCTCGGTAAACGTNGAACGAAAGCTGCGTTCAACGGTNGGGCCACCTAGGAAACGTGTGCC ]
[+] EMBL BX625503 [ CTACTACTGCTACTCGTAA TGTCAATAGGCGAAAGGAAAGTTACTGTGTCGATGGGAAAAGTTTGCCGAAAAGTTGTCATTCCAGTACGCTGTGGTTGGCCAGTACGTACTCCACCATCGTCGCTGGTGTTGCTGCTGCTGTGTCGATGCCGTCGTCATCGTCGGACGCGCAGTGCCTTATTAAATCGTACCAAAACACTAAATCGATTCACCATGTCTGGCCGATCGCGGCAACCTAAAAGCATGCTAGAAATGCCAACCCGTGTAAAAACAAAAGCATAAC CAAACACACTCCTCCGAGAGCTGTTCGCGTGAAGCCCATGAACTAGCAGCCGTGCTTTGGATGGATGTAGTAGCCACCTACA CCAAAGCGCTCGCTGTTCCTTCTCAAATGTT CGACTCC GTCCCT GCTGTGCCATGGGGCAAGGGAATTCTTCGAGAAATATGAAGCGTCGGA GCAACCGATTGAGAAGGAAGCG AAACAAACGGTAAGGGATGCGGAGCTGT TTTGCTCGGCAAACGTTGAA GAAAGCTGC TTCAACGTT GGCCACCTA GAAACGTGTGCCTACTTCGACGGTCTCTATGCAATGGTGTTTAAAATGCAACCAAACCCGTAAACCACTACCAACCTCGATAATACAAAACGATCTAGTATTTCTGTAAATCCCAACTACCCGAGCAAACGTAATCAAACACGTTCTGTGTTTAAATACCGTCGAAATCGTTCACACCTTGCATTCGCGGTCTTCTGTCCGTCGTCGTACAATACTTNCGTC GTGAACAGATCAACNAATGCAA ]
[+] EMBL BM649996 [ ccgATTAAATCGTACCAAAACACTAAATCGATTCACCATGTCTGGCCGATCGCGGCAACCTAAAAGCATGCTAGAAATGCCAACCCGTGTAAAAAAAAAA AAAACATAAAATCACTCCTCCGAGAGCTGTTCGCGTGAAGCCCATGAACTAGCAGCCGTGCTTTGGATGGAT GTAGCCACCTACA CCAAAGCGCTCGCTGTTCCTTCTCAAATGTT CGACTCC GTCCCT GCTGTGCCATGGGGCAAGGGAATTCTTCGAGAAATATGAAGCGTCGGA GCAACCGATTGAGAAGGAAGCG AAACAAACGGTAAGGGATGCGGAGCTGT TTTGCTCGGTAAACGTTGAA GAAAGCTGC TTCAACGTT GGCCACCTA GAAACGTGTGCCTACTTCGACGGTCTCTATGCAATGGTGTTTAAAATGCAACCAAACCCGTAAACCACTACCAACCTCGATAATACAAAACGATCTAGTATTTCTGTAAATCCCAACTACCCGAGCAAACG ]
[+] EMBL BM649694 [ ccgGTTCGCGTGAAGCCCATGAACTAGCAGCCGTGCTTTGGATGGAT GTAGCCACCTACA CCAAAGCGCTCGCTGTTCCTTCTCAAATGTT CGACTCC GTCCCT GCTGTGCCATGGGGCAAGGGAATTCTTCGAGAAATATGAAGCGTCGGA GCAACCGATTGAGAAGGAAGCG AAACAAACGGTAAGGGATGCGGAGCTGT TTTGCTCGGTAAACGTTGAA GAAAGCTGC TTCAACGTT GGCCACCTA GAAACGTGTGCCTACTTCGACGGTCTCTATGCAATGGTGTTTAAAATGCAACCAAACCCGTAAACCACTACCAACCTCGATAATACAAAACGATCTAGTATTTCTGTAAATCCCAACTACCCGAGCAAACGTAATCAAACACGTTCTGTGTTTAAATACCGTCGAAATCGTTCACACCTTGCATTCGCGGTCTTCTGTCCGTCGTCGTACAATACTTCCGTC GTGAACAGATCAACAAATGCGAGAACCGCTTTCCCAATGGATTTCGTTGCCCGTCCGCTTCGCATTCACAAAGTTGCATTAATGTACCAAAATGCAACTGTCCGATAAAAAAATCCCCTACAAAAGAGGTCGCAGCGCCGCAACATAATAAGCACCTAGAGTTGCATTGAAAAAAAAGAAGAAAATATCAATTCAAACCACATGTGTTGCTCGTG]
[+] EMBL BM655625 [ CCCT GCTGTGCCATGGGGCAAGGGAATTCTTCCAGAAATATGAACCGTCGGA CCAACCGATTGAGAAGGAAGCG AAACAAACGGTAAGGGATGCGGAGCTGT TTTGCTCGGCAAACGTTGAA GAAAGCTGC TTCAACGTT GGCCACCTA AAAACGTGTGCCTACTTCGACGGTCTCTATGCAATGGTGTTTAAAATGCAACCAAACCCGTAAACCACTACCAACCTCGATAATACAAAACGATCTAGGATTTCTGTAAATCCCAACTACCCGAGCAAACGTAATCAAACACGTTCTGAGTTTAAATACCGCCGAAATCGTTCACACCTTGCATTCGCGGTCTTCTGTCCGTCGTCGTACAATACTTCCGTCGGGGAACAGATCAACAAATGCAAGAACCTCTTTCCCAATGGATTTCGTTGCCCG ]
consensusID : consensus_7063#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 936 fasta sequence
[GAATCGCCCGAGGTNATACTACTACTACTGCTACTCNCTAATGTCATAGGCGAAAGGAAAGTTACTGTGTCGATGGGAAAAGTTTGCCGAAAAGTTGTCATTCCAGTACGCTGTGGTTGGCCAGTACGTACTACCANCATACGTCGCTGGTGTTTGCTNGCTGCTGTGTACGATGCCGTCGTCATCGTCGGACGCGCAGTGCCTTATTAAATCGTACCAAAACACTAAATCGATTCACCATGTCTGGCCGATCGCGGCAACTTAAAAGCATGCTAGAAATGCCAACCCGTGTAAAAACAAAAGCATAACCAAACACACTCCTCCGAGAGCTTGTTCGCGTGAAGCCCATGAACTAGCAGACCGTGCTTNTGGATGGATGTAGCCACCTACACCAAAGCGCTCGCTGTTCCTTCTCAAATGTTCGACTCCGTCCCTGCTGTGCCATGGGGCAAGGGAATTCTTCGAGAAATATGAAGCGTCGGAGCAACCGATTGAGAAGGACNGCTAAACAAACGGTAAGGGATGCGGAGCTGTTTAGCTCGGCAACGTCTGAAGACACGCTGCTTCAACGTATGGTACCTAAAACGTGTGCCTACTTNCGACGGTCNCTATGCAATGGTGTATANACATGGAACCAAAACCCGTAAACNATAAACCAAAGCCCCCGGATTAANTAACCANTAGCACTGGTCNCTAGCATTATGTCTCTTGGACATTTCCCCAGTTAANCCCGNGCGGAACNCCGGTNAGCCTGAGACACCAGGTGCGNTGGTTGGTAACAACTAANCACAGNCAAANTCCGATCAGGACCTTTGNNTTACAGGNGCGATCTCTGGCAGNCGACCGACACAATGAATNTCAGNAGNNGACACNGATGCACANCATGCGCAAACCTATTACCCAGGGTTAAGATGCCGNCGCGATCCAGCTACACCA]
[+] EMBL AL931245 [GAATCGCCCGAGGTNATACTACTACTACTGCTACTCNCTAATGTCATAGGCGAAAGGAAAGTTACTGTGTCGATGGGAAAAGTTTGCCGAAAAGTTGTCATTCCAGTACGCTGTGGTTGGCCAGTACGTACTACCANCATACGTCGCTGGTGTTTGCTNGCTGCTGTGTACGATGCCGTCGTCATCGTCGGACGCGCAGTGCCTTATTAAATCGTACCAAAACACTAAATCGATTCACCATGTCTGGCCGATCGCGGCAACTTAAAAGCATGCTAGAAATGCCAACCCGTGTAAAAACAAAAGCATAACCAAACACACTCCTCCGAGAGCTTGTTCGCGTGAAGCCCATGAACTAGCAGACCGTGCTTNTGGATGGATGTAGCCACCTACACCAAAGCGCTCGCTGTTCCTTCTCAAATGTTCGACTCCGTCCCTGCTGTGCCATGGGGCAAGGGAATTCTTCGAGAAATATGAAGCGTCGGAGCAACCGATTGAGAAGGACNGCTAAACAAACGGTAAGGGATGCGGAGCTGTTTAGCTCGGCAACGTCTGAAGACACGCTGCTTCAACGTATGGTACCTAAAACGTGTGCCTACTTNCGACGGTCNCTATGCAATGGTGTATANACATGGAACCAAAACCCGTAAACNATAAACCAAAGCCCCCGGATTAANTAACCANTAGCACTGGTCNCTAGCATTATGTCTCTTGGACATTTCCCCAGTTAANCCCGNGCGGAACNCCGGTNAGCCTGAGACACCAGGTGCGNTGGTTGGTAACAACTAANCACAGNCAAANTCCGATCAGGACCTTTGNNTTACAGGNGCGATCTCTGGCAGNCGACCGACACAATGAATNTCAGNAGNNGACACNGATGCACANCATGCGCAAACCTATTACCCAGGGTTAAGATGCCGNCGCGATCCAGCTACACCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7063#0 GAGGCAGAATCCCGCACGAGTGTACTACTACTACTGCTACTCG-TAATGTCATAGGCGAA 59
consensus_7063#1 ------GAATCGCCCGAGGTNATACTACTACTACTGCTACTCNCTAATGTCATAGGCGAA 54
***** * * * ******************** ****************
consensus_7063#0 AGGAAAGTTACTGTGTCGATGGGAAAAGTT-GCCGAAAAGTTGTCATTCCAGTACGCTGT 118
consensus_7063#1 AGGAAAGTTACTGTGTCGATGGGAAAAGTTTGCCGAAAAGTTGTCATTCCAGTACGCTGT 114
****************************** *****************************
consensus_7063#0 GGTTGGCCAGTACGTACT-CCACCAT-CGTCGCTGGTGTTG--CTGCTGCTGTGT-CGAT 173
consensus_7063#1 GGTTGGCCAGTACGTACTACCANCATACGTCGCTGGTGTTTGCTNGCTGCTGTGTACGAT 174
****************** *** *** ************* ********** ****
consensus_7063#0 GCCGTCGTCATCGTCGGACGCGCAGTGCCTTATTAAATCGTACCAAAACACTAAATCGAT 233
consensus_7063#1 GCCGTCGTCATCGTCGGACGCGCAGTGCCTTATTAAATCGTACCAAAACACTAAATCGAT 234
************************************************************
consensus_7063#0 TCACCATGTCTGGCCGATCGCGGCAACCTAAAAGCATGCTAGAAATGCCAACCCGTGTAA 293
consensus_7063#1 TCACCATGTCTGGCCGATCGCGGCAACTTAAAAGCATGCTAGAAATGCCAACCCGTGTAA 294
*************************** ********************************
consensus_7063#0 AAACAAAAGCATAACCAAACACACTCCTCCGAGAGCT-GTTCGCGTGAAGCCCATGAACT 352
consensus_7063#1 AAACAAAAGCATAACCAAACACACTCCTCCGAGAGCTTGTTCGCGTGAAGCCCATGAACT 354
************************************* **********************
consensus_7063#0 AGCAG-CCGTGCTTT-GGATGGATGTAGCCACCTACACCAAAGCGCTCGCTGTTCCTTCT 410
consensus_7063#1 AGCAGACCGTGCTTNTGGATGGATGTAGCCACCTACACCAAAGCGCTCGCTGTTCCTTCT 414
***** ******** ********************************************
consensus_7063#0 CAAATGTTCGACTCCGTCCCTGCTGTGCCATGGGGCAAGGGAATTCTTCGAGAAATATGA 470
consensus_7063#1 CAAATGTTCGACTCCGTCCCTGCTGTGCCATGGGGCAAGGGAATTCTTCGAGAAATATGA 474
************************************************************
consensus_7063#0 AGCGTCGGAGCAACCGATTGAGAAGGA-AGCGAAACAAACGGTAAGGGATGCGGAGCTGT 529
consensus_7063#1 AGCGTCGGAGCAACCGATTGAGAAGGACNGCTAAACAAACGGTAAGGGATGCGGAGCTGT 534
*************************** ** ****************************
consensus_7063#0 TTTGCTCGGTAAACGTTGAAGAAA-GCTGCTTCAACGTTGGCCACCTAGAAACGTGTGCC 588
consensus_7063#1 TTAGCTCGGCAACGTCTGAAGACACGCTGCTTCAACGTATGGTACCTA-AAACGTGTGCC 593
** ****** ** ****** * ************* * ***** ***********
consensus_7063#0 TACTTC-GACGGTCTCTATGCAATGGTGTTTAAA-ATGCAACCAAA-CCCGTAAACCACT 645
consensus_7063#1 TACTTNCGACGGTCNCTATGCAATGGTGTATANACATGGAACCAAAACCCGTAAACNATA 653
***** ******* ************** ** * *** ******* ********* *
consensus_7063#0 ACCAACCTCGATAATACAAAACGATCTAGTATTTCTGTAAATCCCAACTACCCGAGCAAA 705
consensus_7063#1 AACCAAAGCCCCCGGATTAANTAACC-ANTAGCACTG---GTCNCTAGCATTATGTCTC- 708
* * * * * ** * * * ** *** ** * * * *
consensus_7063#0 CGTAATCAAACACGTTCTGTGTTTAAATACCGTCGAAATCGTTCACACCTTGCATTCGCG 765
consensus_7063#1 -----TTGGACATTTCCCCAGTTAANCCCGNGCGGAACNCCGGTNAGCCTGAGACACCAG 763
* *** * * *** * * *** * *** * * *
consensus_7063#0 GTCTTCTGTCCGTCGTCGTACAATACTTCCGTCGTGAACAGATCAACAAATGCAAGAACC 825
consensus_7063#1 GTGCGNTGGTTG--GTAACAACTAANCACAGNCAAANTCCGATCA----------GGACC 811
** ** * ** * * * * * * ***** * ***
consensus_7063#0 GCTTTCCCAATGGATTTCGTTGCCCGTCCGCTTCGCATTCACAAAGTTGCATTAATGTAC 885
consensus_7063#1 -TTTGNNTTACAGGNGCGATCTCTGGCAGNCGACCGACACAATGAATNTCAGNAGNNGAC 870
** * * * * * * * * ** * * ** * **
consensus_7063#0 CAAAATGCA-ACTGTCCGATAAAAAAATCCCCTACAA--AAGAGGTCGCAGCGCCGCAAC 942
consensus_7063#1 ACNGATGCACANCATGCG-CAAACCTATTACCCAGGGTTAAGATGCCGNCGCGATCCAGC 929
***** * * ** *** ** ** * **** * ** *** ** *
consensus_7063#0 ATAATAAGCACCTAGAGTTGCATTGAAAAAAAAGAAGAAAATATCAATTCAAACCACATG 1002
consensus_7063#1 TACACCA----------------------------------------------------- 936
* *
consensus_7063#0 TGTTGCTCGTG 1013
consensus_7063#1 -----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||