These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7079#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1516 fasta sequence [CGTCGTCGTCGTTATTCGAATCGATTTTTAACTCAGGGCGCAGCCATCTTACGGTGGTGCCTGCAGCAGAGAAGAGTGTGCTCACGTCACCGTTCGAAAGTGCAAAAGTGTTTCGAGTTTAGTAGTAAAAGGTGGTGTGGTAGTGCCCAACGCTGCTCTCACAGCGCTTTTGTAACAACATCGTCAGCCCTATTCTGCGCCAGCGGTAGCAGTGAGTGTGTTGTGAGGTGAATTCGTTCGAATAGCGAACAGTTTTGTGGCAGAATAAATAGTGTTGCACTGTGTGGAAAATCACGAATATGAAGGCCATCACGACCATGTGTGCGAAGAATGGTGGTGGTGCATCGCTGCCGGCGATTGCGACGGGTCGAGTGCAGCGCCACCGAGATGGTGAAAACGATGAAATCAAGCTGTATCTGTCGAAGCTGCGGGAGCTGGTTCCGTTCATGCCGAAAAACCGCAAACTGTCCAAGCTCGAGGTTATCCAAAACGTTATTGACTACATCTGCGAGCTGCAAAATGCACTCGATTCGCATCCCGCGGTCAACAGCTTCGACTCGTTGGCGGTGCTCCAGCAGCATCAGCAACAACAGCAAGTTGGATACATGGTGGAATCAATCGATACTGTACCGGCGCATCCAGCAGCAGCAGCATCCAGGCAACCACTGGCGACCATCTTGAGCAGTGGGAGCAATGTTGCCGCCTCTAATATTAACGCTATTGGCGAGGGACTACAACATCCTTGATGGCAAACGGCAGCCGTCACTCGATTGCCCGTGGTACATCGCCAAGGGGTGAATTGCGCTCTTGCAGGGCAGCGCTCCGCCGCACGAACCTGTTCCAAACCATTGGCTTACAACATCTGTGATATTCCGTCGATACTGAGTC-GCACGAGGAAGCCTCAACAGGCAGCATCGATGGGAGGACGTCGACTAAGCGCGATTGAAGGTTCTTCCTCCTTCTTCTCCTCGTCCTCGTCGAACTGAACGGGACTGAAACGAAAAGAGCGGTGTAGGAGCCCTTCGGAACCCTTCGGAAGTTGGTGGGCCTTGTCCAATTGAACACAACTTTCCAACACCAACGGCTGTACCGCCAACCGGGGAAAGGTCGTCGGAGTCTTGCCAAGGTTCCA-GGGAGAGCCCTCGACTCCAGCCAGAGATGATCTCAGGATGTATTAGGATGCTCCACCGGTGCCAGAGTG-TTGGGCCGTGCTGTGCCCCGTACAGCGGCACCATTTATGGGGCCAGGCGGCCAACCAG-CGCAGCAGAACGGAGTGCTCTGTACGTGTGTGT-GTGTGTGTCTGTGTGTGTGTGGCTGTGCGTGTGTTCACCGTTACAGCAGTGTTTGCAACTGTCTCGGTGCCATTGCAGCAGCAGAACTCCTCGCTTTCGGAGCGCTCAATTCTGGTTGATGAATTTCATATTAACAACATAAATACCGTAATTAACACTAGCTGACCAAGGTTCTACACATGTTGTCAACACTGATCCCATTTGAACGATCCGGCGCCATTATC] [+] EMBL BX604633 [CGTCGTCGTCGTTATTCGAATCGATTTTTAACTCAGGGCGCAGCCATCTTACGGTGGTGCCTGCAGCAGAGAAGAGTGTGCTCACGTCACCGTTCGAAAGTGCAAAAGTGTTTCGAGTTTAGTAGTAAAAGGTGGTGTGGTAGTGCCCAACGCTGCTCTCACAGCGCTTTTGTAACAACATCGTCAGCCCTATTCTGCGCCAGCGGTAGCAGTGAGTGTGTTGTGAGGTGAATTCGTTCGAATAGCGAACAGTTTTGTGGCAGAATAAATAGTGTTGCACTGTGTGGAAAATCACGAATATGAAGGCCATCACGACCATGTGTGCGAAGAATGGTGGTGGTGCATCGCTGCCGGCGATTGCGACGGGTCGAGTGCAGCGCCACCGAGATGGTGAAAACGATGAAATCAAGCTGTATCTGTCGAAGCTGCGGGAGCTGGTTCCGTTCATGCCGAAAAACCGCAAACTGTCCAAGCTCGAGGTTATCCAAAACGTTATTGACTACATCTGCGAGCTGCAAAATGCACTCGATTCGCATCCCGCGGTCAACAGCTTCGACTCGTTGGCGGTGCTCCAGCAGCATCAGCAACAACAGCAAGTTGGATACATGGTGGAATCAATCGATACTGTACCGGCGCATCCAGCAGCAGCAGCATCCAGGCAACCACTGGCGACCATCTTGAGCAGTGGGAGCAATGTTGCCGCCTCTAATATTAACGCTATTGGCGAGGGAC ] [+] EMBL BX618130 [ CGGTCAACAGCTTCGACTCGTTGGCGGTGCTCCAGCAGCATCAGCAACAACAGCAAGTTGGAAACATGGTGGAATCAATCGATACTGTACCGGCGCATCCAGCAGCAGCAGCATCCAGGCAACCACTGGCGACCATCTTGAGCAGTGGGAGCAATGTTGCCGCCTCTAATATTAACGCTATTGGCGAGGGACTACAACATCCTTGATGGCAAACGGCAGCCGTCACTCGATTGCCCGTGGTACATCGCCAAGGGGTGAATTGCGCTCTTGCAGGGCAGCGCTCCGCCGCACGAACCTGTTCCAAACCATTGGCTTACAACATCTGTG ] [+] EMBL BX609193 [ TTGGCGGTGCTCCAGCAGCATCAGCAACAACAGCAAGTTGGATACATGGTGGAATCAATCGATACTGTACCGGCGCATCCAGCAGCAGCAGCATCCAGGCAACCACTGGCGACCATCTTGAGCAGTGGGAGCAATGTTGCCGCCTCTAATATTAACGCTATTGGCGAGGGACTACAACAGCCTTGATGGCAAACGGCAGCTGTCACTCGATTGCCCGTGGTACATCGCCAAGGGGTGATTTGCGCTCTTGCAGGGTAGCGCTCCGCCGCACGAACCTGTTCCAAACCATTGGCTTACAACATCTGTGATATTCCGTCGATACTGAGTC GCACGAGGAAGCCTCAACAGGCAGCATCGATGGGAGGACGTCGACTAAGCGCGATTGAAGGTTCTTCCTCCTTCTTCTCCTCGTCCTCGTCGAACTGAACGGGACTGAAACGAAAAGAGCGGTGTAGGAGCCCTTCGGAACCCTTCGGAAGTTGGTGGGCCTTGTCCAATTGAACACAACTTTCCAACACCAACGTCTGTACCGCCAACCGGGGAAAGGTCGTCGGAGTCTTGCCAAGGTTCCA GGGAGAGCCCTCGACTCCAGCCAGAGATGATCTCAGGATGTATTAGGATGCTCCACCGGTGCCAGAGTG TTGGGCCGTGCTGTGCCCCGTACAGCGGCACCATTTATGGGGCCAGGCGGCCAACCAG CGCAGCAGAACGGAGTGCTCTGTACGTGTGTGT GTGTGTGTCTGTGTGTGTGTGGCTG ] [+] EMBL AL931678 [ CCG AGGTAACTG TCCAAACCATTGGCTTACAACATCTGTGATATTCCGTCGATACTGAGTCTGCACGAGGAAGCCTCAACAGGCAGCATCGATGGGAGGACGTCGACTAAGCGCGATTGAAGGTTCTTCCTCCTTCTTCTCCTCGTCCTCGTCGAACTGAACGGGACTGAAACGAAAAGAGCGGTGTAGGAGCCCTTCGGAACCCTTCGGAAGTTGGTGGGCCTTGTCCAATTGAACACAACTTTCCAACACCAACGGCTGTACCGCCAACCGGGGAAAGGTCGTCGGAGTCTTGCCAAGGTTCCAGGGGAGAGCCCTCGACTCCAGCCAGAGATGATCTCAGGATGTATTAGGATGCTCCACCGGTGCCAGAGTGTTTGGGCCGTGCTGTGCCCCGTACAGCGG ACCATTTATGGGGCCAGGCGG CAACCAGNCGCAGCAGAACGGAGTGCTCTGTACGTGTGTGTAGTGTGTGTCTGTGTGTGTGTGGCTGTGCGTGTGTTCACCGTTACAGCAGTGTTTGCAACTGTCTCGGTGCCATTGCAGCAGCAGAACTCCTCGCTTTCGGAGCGCTCAATTCTGGTTGATGAATTTCATATTAACAACATAAATACCGTAATTAACACTAGCTGACCAAGGTTCTACACATGTTGTCAACACTGATCCCATTTGAACGATCCGGCGCCATTATC] [+] EMBL BX610139 [ CGAACGGAACGGGACTGAAACGAAAAGAGCGGTGTAGGAGCCCTTCGGAACCCTTCGGAAGTTGGGGGGCCTTGTCCAATTGAACACAACTTTCCAACACCAACGGCGGTACCGCCAACCGGGGAAAGGGCGTCGG ] consensusID : consensus_7079#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence [CCGCTCCGGGACGCACGCACGCACGCGAGCTTACCACGTCCATCCGTCCGCCGCCGTCGTCGTCGTTATTCGAATCGATTTTTAACTCAGGGCGCAGCCATCTTACGGTGGTGCCTGCAGCAGAGAAGAGTGTGCTCACGTCACCGTTCGAAAGTGCAAAAGTGTTTCGAGTTTAGTAGTAAAAGGTGGTGTGGTAGTGCCCAACGCTGCTCTCATAGCGCTTTTGTAACAACATCGTCAGCCCTATTCAGCGCCAGCGGTAGCAGTGAGTGTGTTGTGAGGTGAATTCGTTCGAACAGCGAACAGTTTTGTGTTAAACAGAATAAATAGTGTTGCACTGTGTGGAAAATCACGAATATGAAGGCCATCACGACCATGTGTGCGAAGAATGGTGGTGGTGCATCGCTGCCGGCGATTGCGACGGGTCGAGTGCAGCGCCACCGAGATGGTGAAAACGATGAAATCAAGCTGTATCTGTCGAAGCTGCGAGAGCTGGTTCCGTTCATGCCGAAAAACCGCAAACTGTCCAAGCTCGAGGTTATCCAAAACGTTATCGACTACATCTGCGAGCTGCAAAATGCACTCGATTCGCATCCCGCGGTCAACAGCTTCGACTCGTTGGCGGTGCTCCAGCAGCATCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAAGTTGGGATACATGGTGGAATCAATCGATA] [+] EMBL BM614355 [CCGCTCCGGGACGCACGCACGCACGCGAGCTTACCACGTCCATCCGTCCGCCGCCGTCGTCGTCGTTATTCGAATCGATTTTTAACTCAGGGCGCAGCCATCTTACGGTGGTGCCTGCAGCAGAGAAGAGTGTGCTCACGTCACCGTTCGAAAGTGCAAAAGTGTTTCGAGTTTAGTAGTAAAAGGTGGTGTGGTAGTGCCCAACGCTGCTCTCATAGCGCTTTTGTAACAACATCGTCAGCCCTATTCAGCGCCAGCGGTAGCAGTGAGTGTGTTGTGAGGTGAATTCGTTCGAACAGCGAACAGTTTTGTGTTAAACAGAATAAATAGTGTTGCACTGTGTGGAAAATCACGAATATGAAGGCCATCACGACCATGTGTGCGAAGAATGGTGGTGGTGCATCGCTGCCGGCGATTGCGACGGGTCGAGTGCAGCGCCACCGAGATGGTGAAAACGATGAAATCAAGCTGTATCTGTCGAAGCTGCGAGAGCTGGTTCCGTTCATGCCGAAAAACCGCAAACTGTCCAAGCTCGAGGTTATCCAAAACGTTATCGACTACATCTGCGAGCTGCAAAATGCACTCGATTCGCATCCCGCGGTCAACAGCTTCGACTCGTTGGCGGTGCTCCAGCAGCATCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAAGTTGGGATACATGGTGGAATCAATCGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7079#0 ------------------------------------------------------CGTCGT 6 consensus_7079#1 CCGCTCCGGGACGCACGCACGCACGCGAGCTTACCACGTCCATCCGTCCGCCGCCGTCGT 60 ****** consensus_7079#0 CGTCGTTATTCGAATCGATTTTTAACTCAGGGCGCAGCCATCTTACGGTGGTGCCTGCAG 66 consensus_7079#1 CGTCGTTATTCGAATCGATTTTTAACTCAGGGCGCAGCCATCTTACGGTGGTGCCTGCAG 120 ************************************************************ consensus_7079#0 CAGAGAAGAGTGTGCTCACGTCACCGTTCGAAAGTGCAAAAGTGTTTCGAGTTTAGTAGT 126 consensus_7079#1 CAGAGAAGAGTGTGCTCACGTCACCGTTCGAAAGTGCAAAAGTGTTTCGAGTTTAGTAGT 180 ************************************************************ consensus_7079#0 AAAAGGTGGTGTGGTAGTGCCCAACGCTGCTCTCACAGCGCTTTTGTAACAACATCGTCA 186 consensus_7079#1 AAAAGGTGGTGTGGTAGTGCCCAACGCTGCTCTCATAGCGCTTTTGTAACAACATCGTCA 240 *********************************** ************************ consensus_7079#0 GCCCTATTCTGCGCCAGCGGTAGCAGTGAGTGTGTTGTGAGGTGAATTCGTTCGAATAGC 246 consensus_7079#1 GCCCTATTCAGCGCCAGCGGTAGCAGTGAGTGTGTTGTGAGGTGAATTCGTTCGAACAGC 300 ********* ********************************************** *** consensus_7079#0 GAACAGTTTTGTG----GCAGAATAAATAGTGTTGCACTGTGTGGAAAATCACGAATATG 302 consensus_7079#1 GAACAGTTTTGTGTTAAACAGAATAAATAGTGTTGCACTGTGTGGAAAATCACGAATATG 360 ************* ****************************************** consensus_7079#0 AAGGCCATCACGACCATGTGTGCGAAGAATGGTGGTGGTGCATCGCTGCCGGCGATTGCG 362 consensus_7079#1 AAGGCCATCACGACCATGTGTGCGAAGAATGGTGGTGGTGCATCGCTGCCGGCGATTGCG 420 ************************************************************ consensus_7079#0 ACGGGTCGAGTGCAGCGCCACCGAGATGGTGAAAACGATGAAATCAAGCTGTATCTGTCG 422 consensus_7079#1 ACGGGTCGAGTGCAGCGCCACCGAGATGGTGAAAACGATGAAATCAAGCTGTATCTGTCG 480 ************************************************************ consensus_7079#0 AAGCTGCGGGAGCTGGTTCCGTTCATGCCGAAAAACCGCAAACTGTCCAAGCTCGAGGTT 482 consensus_7079#1 AAGCTGCGAGAGCTGGTTCCGTTCATGCCGAAAAACCGCAAACTGTCCAAGCTCGAGGTT 540 ******** *************************************************** consensus_7079#0 ATCCAAAACGTTATTGACTACATCTGCGAGCTGCAAAATGCACTCGATTCGCATCCCGCG 542 consensus_7079#1 ATCCAAAACGTTATCGACTACATCTGCGAGCTGCAAAATGCACTCGATTCGCATCCCGCG 600 ************** ********************************************* consensus_7079#0 GTCAACAGCTTCGACTCGTTGGCGGTGCTCCAGCAGCATCAGCAACAACAGCAAGTTGGA 602 consensus_7079#1 GTCAACAGCTTCGACTCGTTGGCGGTGCTCCAGCAGCATCAGCAGCAGCAGCA-GCAGCA 659 ******************************************** ** ***** * * * consensus_7079#0 TACATGGTGGAATCAATCGATACTGTACCGGCGCATCCAGCAGCAGCAGCATCCAGGCAA 662 consensus_7079#1 GCAGCAACAACAGCAAGTTGGGATACATGGTGGAATCAATCGATA--------------- 704 * *** * * * * *** * * * consensus_7079#0 CCACTGGCGACCATCTTGAGCAGTGGGAGCAATGTTGCCGCCTCTAATATTAACGCTATT 722 consensus_7079#1 ------------------------------------------------------------ consensus_7079#0 GGCGAGGGACTACAACATCCTTGATGGCAAACGGCAGCCGTCACTCGATTGCCCGTGGTA 782 consensus_7079#1 ------------------------------------------------------------ consensus_7079#0 CATCGCCAAGGGGTGAATTGCGCTCTTGCAGGGCAGCGCTCCGCCGCACGAACCTGTTCC 842 consensus_7079#1 ------------------------------------------------------------ consensus_7079#0 AAACCATTGGCTTACAACATCTGTGATATTCCGTCGATACTGAGTCGCACGAGGAAGCCT 902 consensus_7079#1 ------------------------------------------------------------ consensus_7079#0 CAACAGGCAGCATCGATGGGAGGACGTCGACTAAGCGCGATTGAAGGTTCTTCCTCCTTC 962 consensus_7079#1 ------------------------------------------------------------ consensus_7079#0 TTCTCCTCGTCCTCGTCGAACTGAACGGGACTGAAACGAAAAGAGCGGTGTAGGAGCCCT 1022 consensus_7079#1 ------------------------------------------------------------ consensus_7079#0 TCGGAACCCTTCGGAAGTTGGTGGGCCTTGTCCAATTGAACACAACTTTCCAACACCAAC 1082 consensus_7079#1 ------------------------------------------------------------ consensus_7079#0 GGCTGTACCGCCAACCGGGGAAAGGTCGTCGGAGTCTTGCCAAGGTTCCAGGGAGAGCCC 1142 consensus_7079#1 ------------------------------------------------------------ consensus_7079#0 TCGACTCCAGCCAGAGATGATCTCAGGATGTATTAGGATGCTCCACCGGTGCCAGAGTGT 1202 consensus_7079#1 ------------------------------------------------------------ consensus_7079#0 TGGGCCGTGCTGTGCCCCGTACAGCGGCACCATTTATGGGGCCAGGCGGCCAACCAGCGC 1262 consensus_7079#1 ------------------------------------------------------------ consensus_7079#0 AGCAGAACGGAGTGCTCTGTACGTGTGTGTGTGTGTGTCTGTGTGTGTGTGGCTGTGCGT 1322 consensus_7079#1 ------------------------------------------------------------ consensus_7079#0 GTGTTCACCGTTACAGCAGTGTTTGCAACTGTCTCGGTGCCATTGCAGCAGCAGAACTCC 1382 consensus_7079#1 ------------------------------------------------------------ consensus_7079#0 TCGCTTTCGGAGCGCTCAATTCTGGTTGATGAATTTCATATTAACAACATAAATACCGTA 1442 consensus_7079#1 ------------------------------------------------------------ consensus_7079#0 ATTAACACTAGCTGACCAAGGTTCTACACATGTTGTCAACACTGATCCCATTTGAACGAT 1502 consensus_7079#1 ------------------------------------------------------------ consensus_7079#0 CCGGCGCCATTATC 1516 consensus_7079#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||